Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 2.9e-246 854.7 425 100.0
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.4e-195 685.6 423 80.9
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 3.1e-195 685.3 423 80.9
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.0e-190 670.2 428 76.2
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 2.3e-190 669.1 425 75.5
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 6.6e-190 667.5 425 75.8
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.5e-189 666.4 425 75.1
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 4.3e-189 664.8 428 75.5
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.6e-189 664.5 425 74.8
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.2e-188 663.3 429 75.8
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.6e-188 662.9 425 74.8
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 3.6e-188 661.8 429 74.4
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.5e-186 656.4 386 85.0
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 6.4e-185 651.0 427 74.7
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 6.4e-185 651.0 423 76.4
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.1e-184 650.2 425 75.8
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 4.2e-184 648.3 430 74.2
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 1.6e-183 646.4 478 70.1
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 4.6e-183 644.8 426 76.5
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 4.6e-183 644.8 423 74.2
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 6.0e-183 644.4 427 72.8
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 7.8e-183 644.0 425 74.4
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.1e-181 640.2 430 75.1
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.9e-181 639.4 434 73.7
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.9e-181 639.4 425 73.9
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 2.8e-180 635.6 424 72.6
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.1e-179 633.6 424 75.2
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.1e-179 633.6 430 72.3
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.8e-179 632.9 436 71.3
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.5e-178 629.8 425 71.5
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 2.0e-178 629.4 437 70.5
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.3e-177 626.7 437 70.3
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.3e-177 626.7 425 72.5
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 2.9e-177 625.5 424 71.9
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 3.8e-177 625.2 426 71.6
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.1e-176 623.6 425 74.6
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.4e-176 623.2 425 72.2
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.2e-176 622.1 400 76.2
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.2e-175 620.2 429 72.3
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.6e-175 619.8 457 69.4
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 2.1e-175 619.4 425 71.3
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 2.1e-175 619.4 414 71.0
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 3.5e-175 618.6 429 72.0
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.3e-174 616.7 426 74.2
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.8e-174 616.3 426 71.4
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.8e-174 616.3 426 72.3
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 3.9e-174 615.1 425 69.4
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 6.7e-174 614.4 419 71.1
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.1e-173 613.6 419 71.4
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.9e-173 612.8 419 70.9
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 3.3e-173 612.1 422 69.9
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 4.3e-173 611.7 419 70.9
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 5.6e-173 611.3 419 70.4
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 7.4e-173 610.9 434 71.0
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 9.6e-173 610.5 426 70.7
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 3.7e-172 608.6 419 70.6
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 4.8e-172 608.2 414 70.8
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 4.8e-172 608.2 388 77.6
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.0e-171 605.1 408 70.6
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 5.3e-171 604.7 428 70.3
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 7.6e-170 600.9 425 69.2
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 9.9e-170 600.5 430 70.2
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 2.2e-169 599.4 425 69.6
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 2.2e-169 599.4 426 69.5
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 8.4e-169 597.4 423 70.0
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 8.4e-169 597.4 427 70.3
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.9e-168 596.3 434 69.6
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 2.4e-168 595.9 491 65.6
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 7.9e-167 590.9 436 68.6
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 3.0e-166 589.0 425 68.2
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 6.7e-166 587.8 443 67.3
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 6.7e-166 587.8 427 68.6
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.1e-165 587.0 453 67.5
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 7.4e-165 584.3 432 65.3
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.8e-163 579.7 419 65.9
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.2e-162 577.0 427 69.1
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 3.4e-162 575.5 391 74.2
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 7.6e-162 574.3 419 66.6
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.4e-160 570.1 393 71.5
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.9e-160 569.7 419 66.8
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.6e-159 566.6 390 71.5
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.7e-159 565.8 426 65.3
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 4.6e-159 565.1 450 66.0
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 7.9e-159 564.3 422 67.1
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.1e-155 553.9 422 66.8
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.4e-154 548.9 335 78.5
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.0e-153 547.4 422 66.1
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.9e-153 545.8 422 65.9
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 3.2e-152 542.3 424 63.0
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 8.8e-150 534.3 426 63.1
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.7e-149 530.8 462 60.8
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 5.3e-147 525.0 415 63.6
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 3.3e-141 505.8 338 71.0
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 1.7e-140 503.4 421 62.9
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.2e-138 497.3 302 76.2
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.0e-137 494.2 299 76.6
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 2.2e-137 493.0 319 72.7
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.9e-134 482.3 302 75.2
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 5.2e-134 481.9 312 74.4
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 5.9e-130 468.4 423 57.9
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.1e-128 464.2 338 65.7
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.5e-128 463.8 436 57.6
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.1e-127 458.4 328 68.3
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 7.5e-125 451.4 423 57.0
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 9.7e-125 451.1 423 55.6
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 7.2e-120 434.9 434 50.5
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 2.6e-117 426.4 429 50.8
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.7e-113 413.7 408 50.5
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.3e-108 397.5 278 71.6
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.5e-106 389.0 321 61.4
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.0e-98 363.6 316 55.7
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.1e-96 357.8 303 59.7
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.3e-84 317.8 277 62.1
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 6.4e-76 288.9 183 68.9
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 2.1e-71 273.9 377 41.9
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 9.0e-70 268.5 467 35.8
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 8.7e-65 251.9 223 52.0
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 2.3e-57 227.3 420 37.6
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 7.4e-56 222.2 574 29.3
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 3.3e-48 196.8 210 51.9
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 4.3e-48 196.4 252 45.6
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.4e-46 191.4 129 72.1
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 9.0e-46 188.7 135 69.6
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 5.5e-43 179.5 119 73.9
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 2.8e-39 167.2 117 69.2
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 8.2e-31 139.0 126 61.1
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 3.2e-27 127.1 256 37.5
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.2e-26 125.2 147 50.3
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 2.2e-20 104.4 107 47.7
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.3e-17 94.4 60 73.3
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 3.6e-10 70.5 123 40.7
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.4e-09 68.6 69 55.1
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 1.1e-06 58.9 64 45.3


User provided reference genes

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