Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041295 Camellia sinensis var. sinensis HOM05D007423 ORTHO05D009091 1.4e-124 449.5 203 100.0
CSS0004105 Camellia sinensis var. sinensis HOM05D007423 ORTHO05D009091 1.3e-87 326.6 204 71.6
CSS0046798 Camellia sinensis var. sinensis HOM05D007423 ORTHO05D009091 1.3e-87 326.6 204 71.6
vmacro22056 Vaccinium macrocarpon HOM05D007423 ORTHO05D009091 5.6e-86 321.2 200 71.0
Dinv39224 Davidia involucrata HOM05D007423 ORTHO05D009091 1.8e-84 316.2 200 69.0
Hma1.2p1_0819F.1_g223720 Hydrangea macrophylla HOM05D007423 ORTHO05D009091 9.8e-83 310.5 199 66.3
Rhsim07G0220000 Rhododendron simsii HOM05D007423 ORTHO05D009091 9.8e-83 310.5 200 70.0
Sabra02G0093200 Salix brachista HOM05D007423 ORTHO05D009091 8.3e-82 307.4 204 65.7
PGSC0003DMG400010617 Solanum tuberosum HOM05D007423 ORTHO05D009091 1.1e-81 307.0 200 67.0
TAR381G1462 Trochodendron aralioides HOM05D007423 ORTHO05D009091 1.9e-81 306.2 200 64.5
Potri.002G118700 Populus trichocarpa HOM05D007423 ORTHO05D009091 3.2e-81 305.4 190 67.9
Sopen04g031440 Solanum pennellii HOM05D007423 ORTHO05D009091 3.2e-81 305.4 200 66.5
Manes.18G046400 Manihot esculenta HOM05D007423 ORTHO05D009091 2.7e-80 302.4 204 65.2
Gohir.D05G213200 Gossypium hirsutum HOM05D007423 ORTHO05D009091 6.0e-80 301.2 201 66.7
FvH4_2g33130 Fragaria vesca HOM05D007423 ORTHO05D009091 1.0e-79 300.4 202 67.3
FAN24G2841 Fragaria x ananassa HOM05D007423 ORTHO05D009091 1.0e-79 300.4 202 67.3
Prupe.1G423100 Prunus persica HOM05D007423 ORTHO05D009091 1.0e-79 300.4 201 65.2
FAN20G0463 Fragaria x ananassa HOM05D007423 ORTHO05D009091 1.3e-79 300.1 202 66.8
Potri.014G016200 Populus trichocarpa HOM05D007423 ORTHO05D009091 1.3e-79 300.1 204 63.2
Thecc.08G089100 Theobroma cacao HOM05D007423 ORTHO05D009091 1.7e-79 299.7 201 66.2
Cc10_g05770 Coffea canephora HOM05D007423 ORTHO05D009091 2.3e-79 299.3 199 63.3
RcHm_v2.0_Chr6g0309541 Rosa chinensis HOM05D007423 ORTHO05D009091 2.3e-79 299.3 202 67.8
FAN15G1020 Fragaria x ananassa HOM05D007423 ORTHO05D009091 3.0e-79 298.9 202 66.3
Haze_22440 Corylus avellana HOM05D007423 ORTHO05D009091 6.6e-79 297.7 195 65.1
Gorai.009G219800 Gossypium raimondii HOM05D007423 ORTHO05D009091 8.6e-79 297.4 201 65.7
GSVIVG01009345001 Vitis vinifera HOM05D007423 ORTHO05D009091 8.6e-79 297.4 199 64.3
FAN27G2505 Fragaria x ananassa HOM05D007423 ORTHO05D009091 4.3e-78 295.0 202 65.3
CAN.G724.25 Capsicum annuum HOM05D007423 ORTHO05D009091 5.6e-78 294.7 203 62.6
Duzib116G0599 Durio zibethinus HOM05D007423 ORTHO05D009091 5.6e-78 294.7 201 65.7
MSTRG.25038 Avicennia marina HOM05D007423 ORTHO05D009091 1.6e-77 293.1 197 65.5
Cfa013780 Carpinus fangiana HOM05D007423 ORTHO05D009091 1.6e-77 293.1 195 64.6
Oeu040517.1 Olea europaea HOM05D007423 ORTHO05D009091 1.6e-77 293.1 201 62.2
Cfa013781 Carpinus fangiana HOM05D007423 ORTHO05D009091 2.1e-77 292.7 195 64.1
Duzib093G1102 Durio zibethinus HOM05D007423 ORTHO05D009091 2.1e-77 292.7 201 63.7
Gohir.A05G209900 Gossypium hirsutum HOM05D007423 ORTHO05D009091 3.6e-77 292.0 201 64.2
SalBow7G0003 Salvia bowleyana HOM05D007423 ORTHO05D009091 4.7e-77 291.6 200 63.0
Duzib041G0474 Durio zibethinus HOM05D007423 ORTHO05D009091 1.4e-76 290.0 201 66.2
TWI56G0135 Tripterygium wilfordii HOM05D007423 ORTHO05D009091 1.4e-76 290.0 200 64.5
COL.COLO4_28509 Corchorus olitorius HOM05D007423 ORTHO05D009091 2.3e-76 289.3 201 63.7
Manes.05G181850 Manihot esculenta HOM05D007423 ORTHO05D009091 2.3e-76 289.3 204 61.8
MELO3C010807.2 Cucumis melo HOM05D007423 ORTHO05D009091 3.1e-76 288.9 188 64.4
CsaV3_2G026150 Cucumis sativus L. HOM05D007423 ORTHO05D009091 4.0e-76 288.5 193 63.7
Glyma.14G088700 Glycine max HOM05D007423 ORTHO05D009091 2.0e-75 286.2 200 62.0
Lj5g0013479 Lotus japonicus HOM05D007423 ORTHO05D009091 4.4e-75 285.0 199 61.8
Nn5g30581 Nelumbo nucifera HOM05D007423 ORTHO05D009091 4.4e-75 285.0 201 62.7
CiPaw.07G175100 Carya illinoinensis HOM05D007423 ORTHO05D009091 7.5e-75 284.3 200 61.5
MD15G1070300 Malus domestica HOM05D007423 ORTHO05D009091 9.8e-75 283.9 206 60.2
Nn1g04566 Nelumbo nucifera HOM05D007423 ORTHO05D009091 9.8e-75 283.9 201 65.7
Oeu053610.1 Olea europaea HOM05D007423 ORTHO05D009091 9.8e-75 283.9 205 60.5
VMungo0647G0208 Vigna mungo HOM05D007423 ORTHO05D009091 3.7e-74 282.0 204 59.3
Phvul.001G027100 Phaseolus vulgaris HOM05D007423 ORTHO05D009091 6.4e-74 281.2 204 59.8
Atru.chr13.827 Acer truncatum HOM05D007423 ORTHO05D009091 2.4e-73 279.3 200 61.0
Psat6g016240 Pisum sativum HOM05D007423 ORTHO05D009091 3.2e-73 278.9 211 58.8
TWI12G0330 Tripterygium wilfordii HOM05D007423 ORTHO05D009091 5.4e-73 278.1 200 62.0
Cpa.g.c34911 Carica papaya HOM05D007423 ORTHO05D009091 1.0e-71 273.9 200 59.0
QL12p038053 Quercus lobata HOM05D007423 ORTHO05D009091 1.3e-71 273.5 200 61.5
TPR.G3793 Trifolium pratense HOM05D007423 ORTHO05D009091 5.1e-71 271.6 208 59.1
CANSAT25G1658 Cannabis sativa HOM05D007423 ORTHO05D009091 8.6e-71 270.8 209 59.3
Medtr1g018140 Medicago truncatula HOM05D007423 ORTHO05D009091 8.6e-71 270.8 208 59.1
Lsat_1_v5_gn_6_110881 Lactuca sativa HOM05D007423 ORTHO05D009091 1.5e-70 270.0 211 56.9
Gorai.010G025800 Gossypium raimondii HOM05D007423 ORTHO05D009091 7.3e-70 267.7 202 58.9
Gohir.A06G024100 Gossypium hirsutum HOM05D007423 ORTHO05D009091 1.2e-69 266.9 202 58.9
Gohir.D06G021200 Gossypium hirsutum HOM05D007423 ORTHO05D009091 1.2e-69 266.9 202 58.9
Phvul.009G071100 Phaseolus vulgaris HOM05D007423 ORTHO05D009091 1.2e-69 266.9 206 57.8
MD08G1084200 Malus domestica HOM05D007423 ORTHO05D009091 2.8e-69 265.8 211 56.9
PGR083G0358 Punica granatum HOM05D007423 ORTHO05D009091 2.3e-68 262.7 195 60.0
Eucgr.F00082 Eucalyptus grandis HOM05D007423 ORTHO05D009091 4.0e-68 261.9 205 57.1
VMungo1309G2697 Vigna mungo HOM05D007423 ORTHO05D009091 5.2e-68 261.5 197 60.4
Glyma.04G045200 Glycine max HOM05D007423 ORTHO05D009091 3.4e-67 258.8 204 56.9
SGA_v2.0_scaffold238G43961 Striga asiatica HOM05D007423 ORTHO05D009091 4.4e-67 258.5 195 56.9
Migut.C00488 Erythranthe guttata HOM05D007423 ORTHO05D009091 5.8e-67 258.1 201 59.2
MBI16_g07988_MAGBIO Magnolia biondii HOM05D007423 ORTHO05D009091 4.9e-66 255.0 195 55.9
HanXRQChr05g0150951 Helianthus annuus HOM05D007423 ORTHO05D009091 6.4e-66 254.6 211 52.6
Ciclev10001602m.g Citrus clementina HOM05D007423 ORTHO05D009091 4.1e-65 251.9 203 58.6
DCAR_020047 Daucus carota HOM05D007423 ORTHO05D009091 2.7e-64 249.2 190 56.8
Lj4C71T2 Lonicera japonica HOM05D007423 ORTHO05D009091 1.3e-63 246.9 201 58.2
Aa31LG9G13280 Aethionema arabicum HOM05D007423 ORTHO05D009091 2.5e-62 242.7 205 52.7
THA.LOC104814189 Tarenaya hassleriana HOM05D007423 ORTHO05D009091 4.3e-62 241.9 206 54.9
VMungo1080G1103 Vigna mungo HOM05D007423 ORTHO05D009091 5.6e-62 241.5 160 63.1
Actinidia22694 Actinidia chinensis HOM05D007423 ORTHO05D009091 7.3e-62 241.1 204 58.3
AT5G43190 Arabidopsis thaliana HOM05D007423 ORTHO05D009091 2.1e-61 239.6 209 52.6
AL8G17420 Arabidopsis lyrata HOM05D007423 ORTHO05D009091 6.2e-61 238.0 209 52.6
CARHR180670 Cardamine hirsuta HOM05D007423 ORTHO05D009091 2.4e-60 236.1 209 51.7
Carub.0008s0548 Capsella rubella HOM05D007423 ORTHO05D009091 4.0e-60 235.3 211 51.2
HPP92_007765 Vanilla planifolia HOM05D007423 ORTHO05D009091 6.8e-60 234.6 203 53.2
Sp2g08010 Schrenkiella parvula HOM05D007423 ORTHO05D009091 2.0e-59 233.0 205 51.7
BcaB07g31023 Brassica carinata HOM05D007423 ORTHO05D009091 9.9e-59 230.7 205 51.2
C09p25610 Brassica napus HOM05D007423 ORTHO05D009091 9.9e-59 230.7 208 51.0
BcaC04g21943 Brassica carinata HOM05D007423 ORTHO05D009091 2.2e-58 229.6 206 51.0
BolC9t55461H Brassica oleracea HOM05D007423 ORTHO05D009091 2.2e-58 229.6 206 51.0
A09p20200 Brassica napus HOM05D007423 ORTHO05D009091 3.8e-58 228.8 208 50.5
Actinidia10198 Actinidia chinensis HOM05D007423 ORTHO05D009091 6.4e-58 228.0 204 54.9
BraA09t37631Z Brassica rapa HOM05D007423 ORTHO05D009091 9.3e-57 224.2 208 49.5
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 1.3e-47 193.7 206 43.7
Dinv44955 Davidia involucrata HOM05D007423 ORTHO05D009091 4.8e-45 185.3 199 46.2
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 2.3e-39 166.4 201 40.8
Nitab4.5_0003176g0010 Nicotiana tabacum HOM05D007423 ORTHO05D009091 7.4e-38 161.4 151 51.7
EL10Ac1g02385 Beta vulgaris HOM05D007423 ORTHO05D009091 2.8e-37 159.5 157 49.7
Nitab4.5_0000164g0030 Nicotiana tabacum HOM05D007423 ORTHO05D009091 6.0e-32 141.7 151 46.4
ClCG08G016460 Citrullus lanatus HOM05D007423 ORTHO05D009091 1.4e-28 130.6 113 52.2
Glyma.06G045700 Glycine max HOM05D007423 ORTHO05D009091 3.1e-28 129.4 137 46.0
Lalb_Chr22g0355601 Lupinus albus HOM05D007423 ORTHO05D009091 6.9e-28 128.3 111 52.3
AUR62037474 Chenopodium quinoa HOM05D007423 ORTHO05D009091 2.1e-24 116.7 138 46.4
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 4.1e-20 102.4 171 29.2
EL10Ac2g04421 Beta vulgaris HOM05D004302 ORTHO05D004939 6.9e-20 101.7 195 29.7
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 9.0e-20 101.3 171 29.8
CDE04G1349 Ceratophyllum demersum HOM05D004302 ORTHO05D004939 5.9e-19 98.6 166 33.1
Hund13664 Selenicereus undatus HOM05D004302 ORTHO05D004939 2.2e-18 96.7 166 31.3
Ah.16g100910 Amaranthus hybridus HOM05D004302 ORTHO05D004939 6.5e-18 95.1 166 31.3
Ah.10g038290 Amaranthus hybridus HOM05D004302 ORTHO05D004939 8.5e-18 94.7 166 31.9
Mapoly0168s0028 Marchantia polymorpha HOM05D003005 ORTHO05D007546 1.1e-17 94.4 191 27.7
Manes.02G061000 Manihot esculenta HOM05D004302 ORTHO05D004939 2.5e-17 93.2 166 31.9
Aa31LG11G13870 Aethionema arabicum HOM05D004302 ORTHO05D004939 4.2e-17 92.4 166 31.9
Glyma.08G253600 Glycine max HOM05D004302 ORTHO05D004939 5.5e-17 92.0 166 31.3
CSS0037679 Camellia sinensis var. sinensis HOM05D004302 ORTHO05D004939 1.2e-16 90.9 166 31.3
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 2.1e-16 90.1 211 29.4
Sc11g0008910 Simmondsia chinensis HOM05D004302 ORTHO05D004939 6.1e-16 88.6 166 30.1
SMO361G0323 Selaginella moellendorffii HOM05D002809 ORTHO05D004939 8.8e-15 84.7 183 29.0
MBI16_g09752_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D017280 1.1e-14 84.3 171 31.6
Pp3c24_1980 Physcomitrium patens HOM05D003005 ORTHO05D004563 3.3e-14 82.8 179 26.8
TAR624G1292 Trochodendron aralioides HOM05D002809 ORTHO05D017280 3.3e-14 82.8 171 32.2
Nn5g27648 Nelumbo nucifera HOM05D004302 ORTHO05D017280 2.8e-13 79.7 171 31.0
Pp3c11_18710 Physcomitrium patens HOM05D004302 ORTHO05D004939 1.1e-12 77.8 192 28.1
AagrBONN_evm.TU.Sc2ySwM_228.2355 Anthoceros agrestis HOM05D002809 ORTHO05D007546 1.4e-12 77.4 190 24.2
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.8e-12 77.0 206 28.6
Pp3c9_6080 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.8e-12 77.0 193 28.5
MBI07_g18750_MAGBIO Magnolia biondii HOM05D002809 ORTHO05D004563 2.4e-12 76.6 197 26.9
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 2.4e-12 76.6 188 28.2
SEGI_39892 Sequoiadendron giganteum HOM05D003005 ORTHO05D017280 4.1e-12 75.9 202 29.2
Nn3g16449 Nelumbo nucifera HOM05D002809 ORTHO05D004563 1.5e-11 73.9 194 27.3
MD13G1120600 Malus domestica HOM05D002809 ORTHO05D004563 2.0e-11 73.6 196 27.6
Peaxi162Scf00048g00175 Petunia axillaris HOM05D005977 ORTHO05D007546 3.4e-11 72.8 161 24.2
Rhsim02G0109800 Rhododendron simsii HOM05D002809 ORTHO05D004563 7.7e-11 71.6 184 27.2
Mapoly0019s0019 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.0e-10 71.2 178 24.2
SEGI_17583 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 1.0e-10 71.2 173 27.2
DCAR_026456 Daucus carota HOM05D002809 ORTHO05D004563 1.3e-10 70.9 185 27.6
Nn5g28167 Nelumbo nucifera HOM05D002809 ORTHO05D004939 2.2e-10 70.1 189 25.9
SalBow2G0967 Salvia bowleyana HOM05D002809 ORTHO05D004563 2.9e-10 69.7 171 28.1
CDE02G3527 Ceratophyllum demersum HOM05D042132 ORTHO05D017280 3.8e-10 69.3 168 28.0
Mapoly0014s0188 Marchantia polymorpha HOM05D002809 ORTHO05D004563 3.8e-10 69.3 170 25.3
CiPaw.06G103600 Carya illinoinensis HOM05D002809 ORTHO05D004563 5.0e-10 68.9 171 28.7
Potri.001G160900 Populus trichocarpa HOM05D005977 ORTHO05D007546 5.0e-10 68.9 162 24.1
HanXRQChr05g0128691 Helianthus annuus HOM05D002809 ORTHO05D004563 6.5e-10 68.6 174 25.9
Haze_12431 Corylus avellana HOM05D002809 ORTHO05D004563 1.1e-09 67.8 171 28.1
MSTRG.8011 Avicennia marina HOM05D002809 ORTHO05D004563 1.9e-09 67.0 171 27.5
TAR629G1933 Trochodendron aralioides HOM05D002809 ORTHO05D004563 3.2e-09 66.2 171 26.9
CSS0001428 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 5.5e-09 65.5 171 26.9
Manes.12G010000 Manihot esculenta HOM05D002809 ORTHO05D004563 7.2e-09 65.1 172 28.5
CSS0014036 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 1.2e-08 64.3 171 25.7
CSS0036768 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 1.2e-08 64.3 171 25.7
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 1.6e-08 63.9 139 30.9
unitig_899.g14814 Utricularia gibba HOM05D003005 ORTHO05D004170 1.6e-08 63.9 182 29.7
Pp3c26_14690 Physcomitrium patens HOM05D004302 ORTHO05D004939 2.1e-08 63.5 179 27.4
Sabra03G0044600 Salix brachista HOM05D005977 ORTHO05D007546 2.1e-08 63.5 161 23.6
Dinv10947 Davidia involucrata HOM05D002809 ORTHO05D004563 2.7e-08 63.2 171 26.3
Potri.003G074100 Populus trichocarpa HOM05D005977 ORTHO05D007546 2.7e-08 63.2 161 23.0
MSTRG.498 Avicennia marina HOM05D002809 ORTHO05D004563 3.6e-08 62.8 172 27.3
Dinv17569 Davidia involucrata HOM05D002809 ORTHO05D004563 3.6e-08 62.8 171 25.7
EL10Ac4g08245 Beta vulgaris HOM05D005977 ORTHO05D007546 4.7e-08 62.4 168 25.0
Gohir.D01G114480 Gossypium hirsutum HOM05D005977 ORTHO05D007546 4.7e-08 62.4 162 25.3
Gorai.002G139700 Gossypium raimondii HOM05D005977 ORTHO05D007546 4.7e-08 62.4 162 25.3
Oeu006522.1 Olea europaea HOM05D002809 ORTHO05D004563 4.7e-08 62.4 195 25.1
vmacro16104 Vaccinium macrocarpon HOM05D002809 ORTHO05D004563 4.7e-08 62.4 169 26.6
Carub.0001s2936 Capsella rubella HOM05D005977 ORTHO05D007546 1.0e-07 61.2 174 22.4
HanXRQChr08g0207911 Helianthus annuus HOM05D002809 ORTHO05D004563 1.0e-07 61.2 171 25.1
Lsat_1_v5_gn_8_147861 Lactuca sativa HOM05D002809 ORTHO05D004563 1.0e-07 61.2 171 24.6
Ciclev10031436m.g Citrus clementina HOM05D002809 ORTHO05D004563 1.4e-07 60.8 171 26.9
Mapoly0063s0077 Marchantia polymorpha HOM05D002809 ORTHO05D004939 1.4e-07 60.8 178 28.1
CANSAT01G2827 Cannabis sativa HOM05D002809 ORTHO05D004563 1.8e-07 60.5 181 26.0
BcaC07g37791 Brassica carinata HOM05D005977 ORTHO05D007546 2.3e-07 60.1 174 22.4
BolC8t48184H Brassica oleracea HOM05D005977 ORTHO05D007546 2.3e-07 60.1 174 22.4
A08p10880 Brassica napus HOM05D005977 ORTHO05D007546 3.0e-07 59.7 174 22.4
BraA08t33083Z Brassica rapa HOM05D005977 ORTHO05D007546 3.0e-07 59.7 174 22.4
BcaB04g18196 Brassica carinata HOM05D005977 ORTHO05D007546 3.9e-07 59.3 174 22.4
Lj3P1070T8 Lonicera japonica HOM05D002809 ORTHO05D004563 3.9e-07 59.3 171 25.1
unitig_699.g19960 Utricularia gibba HOM05D002809 ORTHO05D004563 3.9e-07 59.3 170 27.1
ECA246G0607 Erigeron canadensis HOM05D002809 ORTHO05D004563 8.8e-07 58.2 126 27.8
SEGI_04012 Sequoiadendron giganteum HOM05D003005 ORTHO05D009091 2.0e-06 57.0 82 35.4
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 2.6e-06 56.6 177 26.0
Lj1P1149T39 Lonicera japonica HOM05D005977 ORTHO05D007546 9.7e-06 54.7 161 21.1


User provided reference genes

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