Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041289 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 1.6e-25 118.6 58 100.0
CSS0031826 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 9.8e-20 99.4 55 85.5
CSS0041548 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 2.9e-19 97.8 57 82.5
TAR622G0938 Trochodendron aralioides HOM05D002187 ORTHO05D002243 1.9e-18 95.1 55 78.2
TAR629G0047 Trochodendron aralioides HOM05D002187 ORTHO05D002243 4.1e-18 94.0 55 78.2
MBI15_g22710_MAGBIO Magnolia biondii HOM05D002187 ORTHO05D002243 5.4e-18 93.6 55 78.2
Lalb_Chr11g0063441 Lupinus albus HOM05D002187 ORTHO05D002243 7.0e-18 93.2 55 76.4
DCAR_032010 Daucus carota HOM05D002187 ORTHO05D002243 9.2e-18 92.8 55 76.4
DCAR_032011 Daucus carota HOM05D002187 ORTHO05D002243 9.2e-18 92.8 55 76.4
CSS0022441 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 1.2e-17 92.4 55 76.4
SGA_v2.0_scaffold193G40698 Striga asiatica HOM05D002187 ORTHO05D002243 1.2e-17 92.4 55 74.5
arahy.Tifrunner.gnm1.ann1.MVX6LJ Arachis hypogaea HOM05D002187 ORTHO05D002243 1.6e-17 92.0 55 76.4
arahy.Tifrunner.gnm1.ann1.Z7V5PV Arachis hypogaea HOM05D002187 ORTHO05D002243 1.6e-17 92.0 55 76.4
VMungo1309G0795 Vigna mungo HOM05D002187 ORTHO05D002243 1.6e-17 92.0 55 76.4
Atru.chr7.2605 Acer truncatum HOM05D002187 ORTHO05D002243 2.0e-17 91.7 55 74.5
Migut.A00404 Erythranthe guttata HOM05D002187 ORTHO05D002243 3.5e-17 90.9 55 72.7
Glyma.04G058600 Glycine max HOM05D002187 ORTHO05D002243 3.5e-17 90.9 55 76.4
Manes.16G133500 Manihot esculenta HOM05D002187 ORTHO05D002243 3.5e-17 90.9 55 76.4
Sed0019319 Sechium edule HOM05D002187 ORTHO05D002243 3.5e-17 90.9 55 76.4
Dinv34872 Davidia involucrata HOM05D002187 ORTHO05D002243 4.6e-17 90.5 55 74.5
Hma1.2p1_0588F.1_g184435 Hydrangea macrophylla HOM05D002187 ORTHO05D002243 4.6e-17 90.5 55 72.7
Nitab4.5_0000989g0040 Nicotiana tabacum HOM05D002187 ORTHO05D002243 6.0e-17 90.1 55 72.7
Nitab4.5_0003933g0020 Nicotiana tabacum HOM05D002187 ORTHO05D002243 6.0e-17 90.1 55 72.7
Oeu014157.2 Olea europaea HOM05D002187 ORTHO05D002243 6.0e-17 90.1 55 74.5
Peaxi162Scf00045g01833 Petunia axillaris HOM05D002187 ORTHO05D002243 6.0e-17 90.1 55 72.7
EL10Ac2g02433 Beta vulgaris HOM05D002187 ORTHO05D002243 7.8e-17 89.7 54 77.8
ECA233G0933 Erigeron canadensis HOM05D002187 ORTHO05D002243 7.8e-17 89.7 55 76.4
Lj7A742T21 Lonicera japonica HOM05D002187 ORTHO05D002243 7.8e-17 89.7 55 72.7
Actinidia06442 Actinidia chinensis HOM05D002187 ORTHO05D002243 1.0e-16 89.4 56 73.2
Gohir.A05G062800 Gossypium hirsutum HOM05D002187 ORTHO05D002243 1.0e-16 89.4 55 72.7
Gohir.A05G062866 Gossypium hirsutum HOM05D002187 ORTHO05D002243 1.0e-16 89.4 55 72.7
Gohir.D05G065300 Gossypium hirsutum HOM05D002187 ORTHO05D002243 1.0e-16 89.4 55 72.7
Gorai.009G066100 Gossypium raimondii HOM05D002187 ORTHO05D002243 1.0e-16 89.4 55 72.7
Sed0019494 Sechium edule HOM05D002187 ORTHO05D002243 1.0e-16 89.4 55 72.7
HanXRQChr05g0135621 Helianthus annuus HOM05D002187 ORTHO05D002243 1.3e-16 89.0 55 72.7
AUR62020302 Chenopodium quinoa HOM05D002187 ORTHO05D002243 1.7e-16 88.6 53 77.4
AUR62037697 Chenopodium quinoa HOM05D002187 ORTHO05D002243 1.7e-16 88.6 53 77.4
Lalb_Chr08g0244591 Lupinus albus HOM05D002187 ORTHO05D002243 1.7e-16 88.6 54 72.2
Oeu019794.2 Olea europaea HOM05D002187 ORTHO05D002243 1.7e-16 88.6 55 72.7
Sc09g0010820 Simmondsia chinensis HOM05D002187 ORTHO05D002243 1.7e-16 88.6 54 75.9
TWI63G1524 Tripterygium wilfordii HOM05D002187 ORTHO05D002243 1.7e-16 88.6 55 76.4
GSVIVG01036044001 Vitis vinifera HOM05D002187 ORTHO05D002243 1.7e-16 88.6 55 76.4
Aqoxy3G03813 Aquilegia oxysepala HOM05D002187 ORTHO05D002243 2.3e-16 88.2 56 71.4
Ciclev10009111m.g Citrus clementina HOM05D002187 ORTHO05D002243 2.3e-16 88.2 55 72.7
Solyc08g006510.3 Solanum lycopersicum HOM05D002187 ORTHO05D002243 2.3e-16 88.2 55 70.9
Sopen08g002470 Solanum pennellii HOM05D002187 ORTHO05D002243 2.3e-16 88.2 55 70.9
Eucgr.C01875 Eucalyptus grandis HOM05D002187 ORTHO05D002243 3.0e-16 87.8 55 69.1
Cc08_g06340 Coffea canephora HOM05D002187 ORTHO05D002243 3.9e-16 87.4 55 70.9
COL.COLO4_19002 Corchorus olitorius HOM05D002187 ORTHO05D002243 3.9e-16 87.4 55 70.9
Nn4g23625 Nelumbo nucifera HOM05D002187 ORTHO05D002243 3.9e-16 87.4 55 72.7
Potri.006G268000 Populus trichocarpa HOM05D002187 ORTHO05D002243 3.9e-16 87.4 55 70.9
Sabra18G0017300 Salix brachista HOM05D002187 ORTHO05D002243 3.9e-16 87.4 55 70.9
Thecc.09G010800 Theobroma cacao HOM05D002187 ORTHO05D002243 3.9e-16 87.4 55 69.1
Actinidia36295 Actinidia chinensis HOM05D002187 ORTHO05D002243 5.0e-16 87.0 55 69.1
MSTRG.25813 Avicennia marina HOM05D002187 ORTHO05D002243 5.0e-16 87.0 55 72.7
BcaB08g37313 Brassica carinata HOM05D002187 ORTHO05D002243 5.0e-16 87.0 55 72.7
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 5.0e-16 87.0 55 70.9
Duzib187G1650 Durio zibethinus HOM05D002187 ORTHO05D002243 5.0e-16 87.0 55 70.9
THA.LOC104814977 Tarenaya hassleriana HOM05D002187 ORTHO05D002243 5.0e-16 87.0 55 72.7
AL6G21270 Arabidopsis lyrata HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
AT5G10730 Arabidopsis thaliana HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
BcaB05g21501 Brassica carinata HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
BcaC03g13327 Brassica carinata HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
A02p00620 Brassica napus HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
A10p26870 Brassica napus HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
C02p04610 Brassica napus HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
C09p66040 Brassica napus HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
BolC2t06421H Brassica oleracea HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
BraA02t05045Z Brassica rapa HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
BraA10t44740Z Brassica rapa HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
Carub.0006s0920 Capsella rubella HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
CAN.G396.12 Capsicum annuum HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 69.1
CARHR202590 Cardamine hirsuta HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
ECA240G0785 Erigeron canadensis HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 69.1
Sp6g32730 Schrenkiella parvula HOM05D002187 ORTHO05D002243 6.6e-16 86.7 55 72.7
Ca_15795_v3 Cicer arietinum L. HOM05D002187 ORTHO05D002243 8.6e-16 86.3 55 70.9
Duzib168G0778 Durio zibethinus HOM05D002187 ORTHO05D002243 8.6e-16 86.3 54 72.2
Lj1g0003178 Lotus japonicus HOM05D002187 ORTHO05D002243 8.6e-16 86.3 55 69.1
Rhsim10G0066000 Rhododendron simsii HOM05D002187 ORTHO05D002243 8.6e-16 86.3 55 69.1
ClCG08G013880 Citrullus lanatus HOM05D002187 ORTHO05D002243 1.1e-15 85.9 55 69.1
CsaV3_2G032660 Cucumis sativus L. HOM05D002187 ORTHO05D002243 1.1e-15 85.9 55 69.1
Lsat_1_v5_gn_6_15660 Lactuca sativa HOM05D002187 ORTHO05D002243 1.1e-15 85.9 55 69.1
CDE04G0777 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 1.5e-15 85.5 55 69.1
MELO3C011320.2 Cucumis melo HOM05D002187 ORTHO05D002243 1.5e-15 85.5 55 67.3
Potri.018G013400 Populus trichocarpa HOM05D002187 ORTHO05D002243 1.5e-15 85.5 55 72.7
Prupe.1G399300 Prunus persica HOM05D002187 ORTHO05D002243 1.5e-15 85.5 55 67.3
PGR083G2273 Punica granatum HOM05D002187 ORTHO05D002243 1.9e-15 85.1 55 69.1
TPR.G6775 Trifolium pratense HOM05D002187 ORTHO05D002243 1.9e-15 85.1 55 70.9
Aa31LG3G16380 Aethionema arabicum HOM05D002187 ORTHO05D002243 2.5e-15 84.7 55 70.9
BcaC04g19289 Brassica carinata HOM05D002187 ORTHO05D002243 2.5e-15 84.7 55 70.9
Cpa.g.sc23.47 Carica papaya HOM05D002187 ORTHO05D002243 2.5e-15 84.7 55 67.3
Lsat_1_v5_gn_5_62121 Lactuca sativa HOM05D002187 ORTHO05D002243 2.5e-15 84.7 55 70.9
Phvul.009G085100 Phaseolus vulgaris HOM05D002187 ORTHO05D002243 2.5e-15 84.7 55 69.1
SalBow4G2070 Salvia bowleyana HOM05D002187 ORTHO05D002243 3.3e-15 84.3 54 72.2
Haze_21358 Corylus avellana HOM05D002187 ORTHO05D002243 4.3e-15 84.0 55 70.9
Haze_21364 Corylus avellana HOM05D002187 ORTHO05D002243 4.3e-15 84.0 55 70.9
FAN27G0807 Fragaria x ananassa HOM05D002187 ORTHO05D002243 5.6e-15 83.6 55 65.5
Os02g0556100 Oryza sativa ssp. japonica HOM05D002187 ORTHO05D002243 5.6e-15 83.6 54 70.4
ATR0691G165 Amborella trichopoda HOM05D002187 ORTHO05D002243 9.5e-15 82.8 55 63.6
Duzib150G1169 Durio zibethinus HOM05D002187 ORTHO05D002243 9.5e-15 82.8 55 67.3
Thhalv10014285m.g Eutrema salsugineum HOM05D002187 ORTHO05D002243 9.5e-15 82.8 55 67.3
vmacro05593 Vaccinium macrocarpon HOM05D002187 ORTHO05D002243 9.5e-15 82.8 55 63.6
HanXRQChr13g0412511 Helianthus annuus HOM05D002187 ORTHO05D002243 1.2e-14 82.4 55 65.5
Medtr3g105660 Medicago truncatula HOM05D002187 ORTHO05D002243 1.2e-14 82.4 55 69.1
CSS0007524 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 1.6e-14 82.0 58 74.1
PSO017G1282 Papaver somniferum HOM05D002187 ORTHO05D002243 1.6e-14 82.0 55 67.3
PSO478G3368 Papaver somniferum HOM05D002187 ORTHO05D002243 1.6e-14 82.0 55 67.3
Ah.10g025010 Amaranthus hybridus HOM05D002187 ORTHO05D002243 2.1e-14 81.6 54 66.7
Nitab4.5_0000502g0190 Nicotiana tabacum HOM05D002187 ORTHO05D002243 2.1e-14 81.6 55 63.6
Psat0s4637g0040 Pisum sativum HOM05D002187 ORTHO05D002243 2.8e-14 81.3 55 65.5
RcHm_v2.0_Chr6g0299041 Rosa chinensis HOM05D002187 ORTHO05D002243 3.6e-14 80.9 53 66.0
MD08G1049300 Malus domestica HOM05D002187 ORTHO05D002243 1.4e-13 79.0 55 63.6
Cfa007987 Carpinus fangiana HOM05D002187 ORTHO05D002243 3.1e-13 77.8 53 67.9
Cfa013000 Carpinus fangiana HOM05D002187 ORTHO05D002243 3.1e-13 77.8 55 63.6
MD15G1045600 Malus domestica HOM05D002187 ORTHO05D002243 3.1e-13 77.8 55 63.6
QL02p017682 Quercus lobata HOM05D002187 ORTHO05D002243 3.1e-13 77.8 55 65.5
CANSAT25G0833 Cannabis sativa HOM05D002187 ORTHO05D002243 4.0e-13 77.4 55 65.5
FAN15G1687 Fragaria x ananassa HOM05D002187 ORTHO05D002243 4.0e-13 77.4 55 61.8
CiPaw.07G234000 Carya illinoinensis HOM05D002187 ORTHO05D002243 5.2e-13 77.0 55 63.6
Potri.004G106300 Populus trichocarpa HOM05D002187 ORTHO05D002243 8.9e-13 76.3 55 60.0
HPP92_027402 Vanilla planifolia HOM05D002187 ORTHO05D002243 1.2e-12 75.9 53 62.3
HPP92_027411 Vanilla planifolia HOM05D002187 ORTHO05D002243 1.2e-12 75.9 53 62.3
Sabra04G0075900 Salix brachista HOM05D002187 ORTHO05D002243 4.4e-12 73.9 55 60.0
CAN.G808.4 Capsicum annuum HOM05D002187 ORTHO05D000018 7.5e-12 73.2 57 56.1
Thecc.04G145200 Theobroma cacao HOM05D002187 ORTHO05D002243 7.5e-12 73.2 55 60.0
TWI60G0353 Tripterygium wilfordii HOM05D002187 ORTHO05D002243 2.9e-11 71.2 55 56.4
Manes.02G064300 Manihot esculenta HOM05D002187 ORTHO05D002243 3.7e-11 70.9 56 57.1
Atru.chr8.793 Acer truncatum HOM05D002187 ORTHO05D002243 8.3e-11 69.7 56 55.4
Ciclev10012367m.g Citrus clementina HOM05D002187 ORTHO05D002243 8.3e-11 69.7 55 58.2
Haze_14087 Corylus avellana HOM05D002187 ORTHO05D002243 8.3e-11 69.7 50 66.0
COL.COLO4_38266 Corchorus olitorius HOM05D002187 ORTHO05D002243 1.9e-10 68.6 53 58.5
Eucgr.C01613 Eucalyptus grandis HOM05D002187 ORTHO05D002243 2.4e-10 68.2 57 52.6
Glyma.06G059200 Glycine max HOM05D002187 ORTHO05D002243 3.5e-09 64.3 54 61.1
Mapoly0114s0058 Marchantia polymorpha HOM05D002187 ORTHO05D002243 3.5e-09 64.3 52 55.8
Ca_00723_v3 Cicer arietinum L. HOM05D002187 ORTHO05D002243 4.6e-09 63.9 42 64.3
Glyma.U003166 Glycine max HOM05D002187 ORTHO05D002243 6.0e-09 63.5 55 63.6
Eucgr.C01871 Eucalyptus grandis HOM05D000109 ORTHO05D000210 7.8e-09 63.2 53 52.8
unitig_747.g21899 Utricularia gibba HOM05D002187 ORTHO05D002243 7.8e-09 63.2 49 59.2
SEGI_18253 Sequoiadendron giganteum HOM05D002187 ORTHO05D002243 3.9e-08 60.8 53 50.9
Glyma.U003033 Glycine max HOM05D002187 ORTHO05D002243 5.1e-08 60.5 52 63.5
THA.LOC104820963 Tarenaya hassleriana HOM05D002187 ORTHO05D002243 3.3e-07 57.8 57 57.9
Carub.0006s1410 Capsella rubella HOM05D002187 ORTHO05D002243 4.3e-07 57.4 53 50.9
Pp3c8_5120 Physcomitrium patens HOM05D002187 ORTHO05D002243 1.2e-06 55.8 52 51.9
SMO232G0026 Selaginella moellendorffii HOM05D002187 ORTHO05D002243 1.6e-06 55.5 47 51.1
Pp3c18_5720 Physcomitrium patens HOM05D002187 ORTHO05D002243 2.1e-06 55.1 52 48.1
AL6G26790 Arabidopsis lyrata HOM05D002187 ORTHO05D002243 2.8e-06 54.7 53 47.2
Aa31LG11G13690 Aethionema arabicum HOM05D002187 ORTHO05D002243 3.6e-06 54.3 51 51.0
Thhalv10014393m.g Eutrema salsugineum HOM05D002187 ORTHO05D002243 3.6e-06 54.3 53 45.3
AT5G15910 Arabidopsis thaliana HOM05D002187 ORTHO05D002243 4.7e-06 53.9 51 49.0
BcaNung02213 Brassica carinata HOM05D002187 ORTHO05D002243 6.2e-06 53.5 50 46.0


User provided reference genes

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