Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041246 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 9.8e-49 196.4 96 100.0
CSS0041536 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-46 189.1 96 97.9
CANSAT64G1793 Cannabis sativa HOM05D005032 ORTHO05D006268 3.7e-24 114.8 66 83.3
CSS0010323 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.4e-23 112.8 65 84.6
CSS0024978 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.4e-23 112.8 65 84.6
Actinidia13669 Actinidia chinensis HOM05D005032 ORTHO05D006268 1.9e-23 112.5 66 83.3
Atru.chr11.1329 Acer truncatum HOM05D005032 ORTHO05D006268 3.2e-23 111.7 65 83.1
Thecc.02G359100 Theobroma cacao HOM05D005032 ORTHO05D006268 3.2e-23 111.7 66 80.3
GSVIVG01011930001 Vitis vinifera HOM05D005032 ORTHO05D006268 9.2e-23 110.2 66 80.3
Cpa.g.sc1.204 Carica papaya HOM05D005032 ORTHO05D006268 1.2e-22 109.8 65 80.0
Potri.008G118200 Populus trichocarpa HOM05D005032 ORTHO05D006268 1.6e-22 109.4 66 78.8
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 1.6e-22 109.4 66 75.8
Actinidia38384 Actinidia chinensis HOM05D005032 ORTHO05D006268 2.7e-22 108.6 65 83.1
Dinv21116 Davidia involucrata HOM05D005032 ORTHO05D006268 3.5e-22 108.2 66 77.3
VMungo0720G2532 Vigna mungo HOM05D005032 ORTHO05D006268 3.5e-22 108.2 78 71.8
MD13G1044800 Malus domestica HOM05D005032 ORTHO05D006268 4.6e-22 107.8 66 80.3
MD16G1046200 Malus domestica HOM05D005032 ORTHO05D006268 4.6e-22 107.8 66 78.8
Prupe.1G307200 Prunus persica HOM05D005032 ORTHO05D006268 6.0e-22 107.5 66 78.8
Gorai.008G185100 Gossypium raimondii HOM05D005032 ORTHO05D006268 7.8e-22 107.1 71 71.8
Manes.14G099000 Manihot esculenta HOM05D005032 ORTHO05D006268 1.0e-21 106.7 65 80.0
Rhsim12G0082300 Rhododendron simsii HOM05D005032 ORTHO05D006268 1.0e-21 106.7 66 81.8
RcHm_v2.0_Chr4g0435621 Rosa chinensis HOM05D005032 ORTHO05D006268 1.3e-21 106.3 67 80.6
Sabra08G0089600 Salix brachista HOM05D005032 ORTHO05D006268 1.3e-21 106.3 66 77.3
DCAR_026721 Daucus carota HOM05D005032 ORTHO05D006268 1.7e-21 105.9 66 75.8
Potri.010G128100 Populus trichocarpa HOM05D005032 ORTHO05D006268 1.7e-21 105.9 66 77.3
QL01p044542 Quercus lobata HOM05D005032 ORTHO05D006268 1.7e-21 105.9 58 89.7
Ciclev10031322m.g Citrus clementina HOM05D005032 ORTHO05D006268 2.3e-21 105.5 65 78.5
Gohir.A12G169300 Gossypium hirsutum HOM05D005032 ORTHO05D006268 2.3e-21 105.5 64 79.7
TAR374G1139 Trochodendron aralioides HOM05D005032 ORTHO05D006268 3.9e-21 104.8 64 78.1
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 3.9e-21 104.8 66 80.3
Cfa018616 Carpinus fangiana HOM05D005032 ORTHO05D006268 5.1e-21 104.4 66 75.8
FvH4_4g27760 Fragaria vesca HOM05D005032 ORTHO05D006268 5.1e-21 104.4 67 79.1
FAN07G0299 Fragaria x ananassa HOM05D005032 ORTHO05D006268 5.1e-21 104.4 67 79.1
FAN12G2852 Fragaria x ananassa HOM05D005032 ORTHO05D006268 5.1e-21 104.4 67 79.1
FAN22G0537 Fragaria x ananassa HOM05D005032 ORTHO05D006268 5.1e-21 104.4 67 79.1
Nn3g17775 Nelumbo nucifera HOM05D005032 ORTHO05D006268 5.1e-21 104.4 66 77.3
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 5.1e-21 104.4 63 81.0
Medtr5g054780 Medicago truncatula HOM05D005032 ORTHO05D006268 6.6e-21 104.0 63 81.0
Glyma.10G276200 Glycine max HOM05D005032 ORTHO05D006268 8.6e-21 103.6 58 87.9
Glyma.20G113500 Glycine max HOM05D005032 ORTHO05D006268 8.6e-21 103.6 58 87.9
Phvul.007G025400 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 8.6e-21 103.6 58 87.9
Lj6A762T40 Lonicera japonica HOM05D005032 ORTHO05D006268 1.5e-20 102.8 53 94.3
Lj6A763T35 Lonicera japonica HOM05D005032 ORTHO05D006268 1.5e-20 102.8 53 94.3
Sed0015336 Sechium edule HOM05D005032 ORTHO05D006268 1.9e-20 102.4 64 79.7
Eucgr.B03034 Eucalyptus grandis HOM05D005032 ORTHO05D006268 2.5e-20 102.1 64 75.0
HanXRQChr16g0529611 Helianthus annuus HOM05D005032 ORTHO05D006268 2.5e-20 102.1 65 76.9
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 2.5e-20 102.1 63 79.4
Lalb_Chr17g0341981 Lupinus albus HOM05D005032 ORTHO05D006268 3.3e-20 101.7 58 82.8
Psat2g101480 Pisum sativum HOM05D005032 ORTHO05D006268 3.3e-20 101.7 63 79.4
Lalb_Chr02g0146101 Lupinus albus HOM05D005032 ORTHO05D006268 4.3e-20 101.3 54 90.7
PGR102G0428 Punica granatum HOM05D005032 ORTHO05D006268 4.3e-20 101.3 65 75.4
TPR.G38289 Trifolium pratense HOM05D005032 ORTHO05D006268 4.3e-20 101.3 63 77.8
Ca_11190_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 7.3e-20 100.5 58 86.2
CiPaw.15G004700 Carya illinoinensis HOM05D005032 ORTHO05D006268 1.6e-19 99.4 67 74.6
Sabra10G0097300 Salix brachista HOM05D005032 ORTHO05D006268 1.6e-19 99.4 71 70.4
arahy.Tifrunner.gnm1.ann1.HPX6PX Arachis hypogaea HOM05D005032 ORTHO05D006268 2.1e-19 99.0 58 84.5
arahy.Tifrunner.gnm1.ann1.WF5P9Q Arachis hypogaea HOM05D005032 ORTHO05D006268 2.1e-19 99.0 58 84.5
Lj5g0015640 Lotus japonicus HOM05D005032 ORTHO05D006268 2.1e-19 99.0 57 82.5
Cc00_g17470 Coffea canephora HOM05D005032 ORTHO05D006268 2.8e-19 98.6 65 76.9
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 2.8e-19 98.6 66 71.2
Glyma.01G084500 Glycine max HOM05D005032 ORTHO05D006268 2.8e-19 98.6 60 83.3
ECA234G2686 Erigeron canadensis HOM05D005032 ORTHO05D006268 3.6e-19 98.2 65 73.8
Psat6g229600 Pisum sativum HOM05D005032 ORTHO05D006268 3.6e-19 98.2 54 88.9
Haze_17453 Corylus avellana HOM05D005032 ORTHO05D006268 4.7e-19 97.8 54 87.0
Duzib248G0180 Durio zibethinus HOM05D005032 ORTHO05D006268 4.7e-19 97.8 51 92.2
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 6.2e-19 97.4 58 79.3
CsaV3_5G034080 Cucumis sativus L. HOM05D005032 ORTHO05D006268 6.2e-19 97.4 65 75.4
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 8.1e-19 97.1 66 71.2
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 8.1e-19 97.1 59 78.0
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 8.1e-19 97.1 59 78.0
ClCG05G022930 Citrullus lanatus HOM05D005032 ORTHO05D006268 1.1e-18 96.7 65 73.8
Migut.E00317 Erythranthe guttata HOM05D005032 ORTHO05D006268 1.8e-18 95.9 54 87.0
MBI13_g09687_MAGBIO Magnolia biondii HOM05D005032 ORTHO05D006268 1.8e-18 95.9 66 74.2
Ah.03g137830 Amaranthus hybridus HOM05D005032 ORTHO05D006268 2.3e-18 95.5 58 77.6
HPP92_006145 Vanilla planifolia HOM05D005032 ORTHO05D006268 2.3e-18 95.5 58 79.3
Nitab4.5_0003642g0010 Nicotiana tabacum HOM05D005032 ORTHO05D006268 3.1e-18 95.1 62 74.2
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 5.2e-18 94.4 58 77.6
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 5.2e-18 94.4 58 77.6
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 5.2e-18 94.4 63 73.0
PSO782G1090 Papaver somniferum HOM05D005032 ORTHO05D006268 5.2e-18 94.4 65 70.8
HanXRQChr17g0552231 Helianthus annuus HOM05D005032 ORTHO05D006268 6.8e-18 94.0 64 71.9
Lsat_1_v5_gn_4_18881 Lactuca sativa HOM05D005032 ORTHO05D006268 6.8e-18 94.0 50 90.0
Gorai.013G081000 Gossypium raimondii HOM05D005032 ORTHO05D006268 8.9e-18 93.6 63 71.4
SalBow8G5398 Salvia bowleyana HOM05D005032 ORTHO05D006268 8.9e-18 93.6 65 73.8
Aqoxy3G03931 Aquilegia oxysepala HOM05D005032 ORTHO05D006268 1.2e-17 93.2 66 71.2
Sc04g0004960 Simmondsia chinensis HOM05D005032 ORTHO05D006268 1.2e-17 93.2 62 69.4
Nitab4.5_0000672g0140 Nicotiana tabacum HOM05D005032 ORTHO05D006268 1.5e-17 92.8 63 74.6
Hund25090 Selenicereus undatus HOM05D005032 ORTHO05D006268 1.5e-17 92.8 60 73.3
ATR0097G002 Amborella trichopoda HOM05D005032 ORTHO05D006268 2.0e-17 92.4 60 71.7
MSTRG.2252 Avicennia marina HOM05D005032 ORTHO05D006268 2.6e-17 92.0 54 81.5
CDE05G1095 Ceratophyllum demersum HOM05D005032 ORTHO05D006268 3.4e-17 91.7 62 75.8
Medtr1g111330 Medicago truncatula HOM05D005032 ORTHO05D006268 3.4e-17 91.7 54 83.3
Thhalv10007483m.g Eutrema salsugineum HOM05D005032 ORTHO05D006268 5.8e-17 90.9 53 81.1
Peaxi162Scf00380g00811 Petunia axillaris HOM05D005032 ORTHO05D006268 5.8e-17 90.9 62 74.2
BcaB03g12017 Brassica carinata HOM05D005032 ORTHO05D006268 1.3e-16 89.7 53 81.1
BcaC01g01701 Brassica carinata HOM05D005032 ORTHO05D006268 1.3e-16 89.7 53 81.1
A08p27010 Brassica napus HOM05D005032 ORTHO05D006268 1.3e-16 89.7 53 81.1
C03p72880 Brassica napus HOM05D005032 ORTHO05D006268 1.3e-16 89.7 53 81.1
BolC3t19586H Brassica oleracea HOM05D005032 ORTHO05D006268 1.3e-16 89.7 53 81.1
BraA08t34647Z Brassica rapa HOM05D005032 ORTHO05D006268 1.3e-16 89.7 53 81.1
Solyc05g009670.3 Solanum lycopersicum HOM05D005032 ORTHO05D006268 1.3e-16 89.7 66 68.2
Sopen05g005490 Solanum pennellii HOM05D005032 ORTHO05D006268 1.3e-16 89.7 66 68.2
PGSC0003DMG402012961 Solanum tuberosum HOM05D005032 ORTHO05D006268 1.3e-16 89.7 66 68.2
CAN.G656.42 Capsicum annuum HOM05D005032 ORTHO05D006268 1.7e-16 89.4 63 71.4
CARHR025960 Cardamine hirsuta HOM05D005032 ORTHO05D006268 1.7e-16 89.4 53 79.2
Carub.0001s2498 Capsella rubella HOM05D005032 ORTHO05D006268 2.2e-16 89.0 53 79.2
Lj2g0024967 Lotus japonicus HOM05D005032 ORTHO05D006268 2.2e-16 89.0 60 68.3
Sp1g22710 Schrenkiella parvula HOM05D005032 ORTHO05D006268 2.2e-16 89.0 53 79.2
Zm00001eb245170 Zea mays HOM05D005032 ORTHO05D006268 2.2e-16 89.0 58 77.6
Gohir.D13G070800 Gossypium hirsutum HOM05D005032 ORTHO05D006268 2.9e-16 88.6 53 79.2
TPR.G26307 Trifolium pratense HOM05D005032 ORTHO05D006268 2.9e-16 88.6 54 79.6
Gohir.A13G053540 Gossypium hirsutum HOM05D005032 ORTHO05D006268 3.7e-16 88.2 51 82.4
AT1G25500 Arabidopsis thaliana HOM05D005032 ORTHO05D006268 4.9e-16 87.8 53 77.4
Aa31LG7G9000 Aethionema arabicum HOM05D005032 ORTHO05D006268 1.4e-15 86.3 53 77.4
Medtr4g108910 Medicago truncatula HOM05D005032 ORTHO05D006268 1.4e-15 86.3 54 79.6
AL1G39800 Arabidopsis lyrata HOM05D005032 ORTHO05D006268 1.9e-15 85.9 51 78.4
Os02g0580100 Oryza sativa ssp. japonica HOM05D005032 ORTHO05D006268 1.9e-15 85.9 53 75.5
unitig_699.g19492 Utricularia gibba HOM05D005032 ORTHO05D006268 3.2e-15 85.1 65 66.2
Oeu044386.2 Olea europaea HOM05D005032 ORTHO05D006268 4.1e-15 84.7 69 65.2
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 5.4e-15 84.3 55 80.0
SEGI_10382 Sequoiadendron giganteum HOM05D005032 ORTHO05D006268 1.2e-14 83.2 52 76.9
THA.LOC104808234 Tarenaya hassleriana HOM05D005032 ORTHO05D006268 3.0e-13 78.6 47 76.6
SMO165G0124 Selaginella moellendorffii HOM05D005032 ORTHO05D006268 6.6e-13 77.4 47 76.6
Mapoly0004s0207 Marchantia polymorpha HOM05D005032 ORTHO05D006268 1.5e-12 76.3 47 76.6
PSO063G0757 Papaver somniferum HOM05D005032 ORTHO05D006268 3.4e-09 65.1 34 88.2
BcaB03g14048 Brassica carinata HOM05D005032 ORTHO05D006268 2.2e-08 62.4 45 71.1
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 8.4e-08 60.5 47 53.2


User provided reference genes

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