Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.7e-233 810.8 413 100.0
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.3e-232 808.5 413 99.8
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 6.4e-190 667.5 414 83.1
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.4e-181 639.8 416 78.8
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 4.3e-178 628.2 413 79.9
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.4e-173 613.2 414 75.1
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 7.9e-172 607.4 413 74.1
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.3e-169 600.1 415 75.2
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 6.9e-168 594.3 415 74.2
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.0e-166 590.5 399 75.9
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 2.2e-166 589.3 413 72.2
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 8.5e-166 587.4 416 72.8
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 8.5e-166 587.4 411 74.0
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 2.5e-165 585.9 480 66.5
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 7.2e-165 584.3 419 73.7
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 7.2e-165 584.3 406 74.1
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.5e-162 575.9 411 73.0
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 3.3e-162 575.5 416 72.8
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 7.4e-162 574.3 421 70.1
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.7e-161 573.2 417 73.1
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 4.8e-161 571.6 411 72.7
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.1e-160 570.5 419 69.0
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.4e-160 570.1 419 68.7
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 1.4e-160 570.1 410 72.7
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.4e-160 569.3 406 72.7
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-160 569.3 418 68.9
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.1e-160 568.9 419 68.5
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 3.1e-160 568.9 332 84.3
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 4.1e-160 568.5 419 71.6
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 9.1e-160 567.4 418 70.8
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 9.1e-160 567.4 409 71.9
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.5e-159 565.1 419 68.3
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.5e-159 565.1 418 68.7
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.9e-158 562.4 418 72.0
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.8e-158 562.0 418 72.2
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.0e-158 561.6 418 67.9
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 5.0e-158 561.6 417 71.0
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.1e-157 560.5 415 70.8
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.9e-157 559.7 353 79.3
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.9e-157 559.7 423 70.2
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.5e-157 558.1 413 70.9
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 4.7e-156 555.1 417 69.8
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 7.9e-156 554.3 417 71.0
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.8e-155 553.1 419 68.7
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 3.9e-155 552.0 397 71.5
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 5.1e-155 551.6 415 68.4
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 4.4e-154 548.5 399 73.2
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 7.4e-154 547.7 402 70.9
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 9.7e-154 547.4 404 71.5
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.7e-153 546.6 416 70.4
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.1e-152 543.9 408 67.9
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.4e-152 543.5 384 71.4
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.4e-152 542.7 371 72.5
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 5.3e-152 541.6 417 68.6
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.6e-151 540.0 394 70.8
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 2.0e-151 539.7 412 69.4
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 7.7e-151 537.7 410 66.3
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 7.7e-151 537.7 421 67.5
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 8.5e-150 534.3 415 68.9
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 2.1e-148 529.6 392 70.4
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.7e-148 529.3 397 71.8
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 4.7e-148 528.5 421 67.5
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 6.1e-148 528.1 387 69.5
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.3e-147 526.2 411 65.7
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 4.0e-147 525.4 414 68.4
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 6.7e-147 524.6 412 66.3
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 6.7e-147 524.6 417 64.5
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.0e-146 523.1 403 66.7
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.0e-146 523.1 331 79.2
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 3.3e-146 522.3 411 66.9
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 5.7e-146 521.5 367 71.1
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 5.7e-146 521.5 367 71.1
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 7.5e-146 521.2 403 66.3
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 9.7e-146 520.8 409 65.5
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.3e-145 520.4 409 66.5
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.3e-145 520.4 420 65.7
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.3e-145 520.4 408 65.7
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 4.8e-145 518.5 366 69.4
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 6.3e-145 518.1 385 69.4
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 2.4e-144 516.2 418 66.5
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.1e-144 515.8 412 64.8
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 5.3e-144 515.0 419 64.2
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 7.0e-144 514.6 403 66.0
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 9.1e-144 514.2 408 66.4
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.2e-143 513.8 419 64.2
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.0e-143 513.1 358 69.6
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 2.7e-143 512.7 408 66.2
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 3.5e-143 512.3 416 63.9
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 5.9e-143 511.5 407 66.3
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.9e-142 509.2 422 62.8
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 8.5e-142 507.7 409 62.3
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 5.7e-138 495.0 403 64.0
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 9.8e-138 494.2 403 63.8
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 9.8e-138 494.2 332 75.6
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 9.8e-138 494.2 404 63.9
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.3e-137 493.8 366 68.3
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 3.7e-137 492.3 403 63.5
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 6.3e-137 491.5 403 64.3
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.8e-136 490.0 335 72.2
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.4e-136 489.6 403 63.8
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 3.1e-136 489.2 405 64.0
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.1e-136 489.2 404 63.9
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.1e-136 489.2 333 72.7
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.2e-135 487.3 404 63.4
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.0e-135 486.5 404 64.6
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.0e-134 484.2 409 61.6
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.8e-134 482.3 409 63.6
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 5.0e-134 481.9 405 63.0
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.3e-125 452.6 304 72.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 9.5e-125 451.1 318 71.1
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.7e-121 439.1 292 76.7
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 3.7e-121 439.1 383 61.6
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.1e-120 437.6 426 59.4
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 1.4e-120 437.2 413 58.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.2e-119 434.1 352 64.5
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.6e-119 432.2 358 62.6
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.1e-115 419.5 392 57.1
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 2.0e-114 416.8 432 54.6
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 5.8e-114 415.2 411 59.6
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 6.4e-113 411.8 331 62.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.7e-108 395.6 343 57.4
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-107 392.1 337 57.9
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.5e-106 388.3 344 55.5
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.1e-96 357.8 282 68.1
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.9e-96 357.1 314 56.1
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.2e-88 329.7 285 61.1
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 9.9e-82 308.1 333 52.0
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.6e-76 289.7 320 45.0
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 5.3e-75 285.8 332 42.5
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-74 284.6 253 61.3
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.2e-72 276.6 312 45.5
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.4e-69 265.4 310 44.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.4e-67 260.4 292 45.2
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-66 256.9 282 44.7
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.2e-65 253.8 227 62.1
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.5e-64 250.4 179 68.7
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 7.1e-64 248.8 270 52.6
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.3e-64 248.4 294 42.9
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-63 248.1 283 43.1
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.0e-63 245.7 301 40.2
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 3.0e-62 243.4 341 37.8
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 5.1e-62 242.7 149 82.6
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-60 237.3 288 42.0
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.8e-57 226.5 267 41.6
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 3.0e-54 216.9 200 61.0
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 7.4e-53 212.2 344 36.9
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.5e-48 197.2 164 62.2
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.1e-47 192.6 140 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.1e-45 188.3 153 55.6
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.3e-43 179.5 306 32.4
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-42 178.3 312 34.9
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.5e-42 177.9 145 61.4
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-41 175.3 364 33.2
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.0e-41 172.9 314 34.7
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.5e-40 170.6 218 41.3
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.8e-38 162.2 340 31.8
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-37 161.4 329 29.2
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.2e-36 157.5 309 28.8
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.5e-32 142.9 292 31.8
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.0e-30 137.1 266 31.6
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 4.0e-30 136.7 99 71.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 2.2e-28 131.0 119 52.1
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 7.0e-27 125.9 77 80.5
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.5e-26 123.6 103 53.4
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.5e-25 119.4 218 30.7
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.5e-25 119.0 76 73.7
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-24 118.6 293 27.0
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 4.2e-24 116.7 349 26.9
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 9.4e-24 115.5 295 29.8
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-23 114.8 166 36.7
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.6e-23 113.6 317 30.0
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.3e-22 110.9 321 29.6
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-19 101.7 311 28.6
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 4.1e-19 100.1 298 26.5
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 5.0e-17 93.2 351 24.5
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 7.5e-13 79.3 61 65.6
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-09 68.9 143 32.2
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-08 63.9 92 44.6


User provided reference genes

Program Settings