Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.9e-48 194.9 97 100.0
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.9e-44 182.2 97 93.8
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 1.1e-31 139.8 87 79.3
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.1e-28 129.8 88 72.7
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.3e-28 128.3 86 74.4
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 4.3e-28 127.9 87 74.7
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 3.7e-27 124.8 87 69.0
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 4.8e-27 124.4 87 71.3
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 8.1e-27 123.6 88 68.2
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.4e-26 122.9 87 69.0
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 4.0e-26 121.3 88 67.0
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 5.3e-26 120.9 87 67.8
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.2e-25 119.8 86 66.3
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.5e-25 119.4 86 65.1
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.5e-25 119.4 86 66.3
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 2.0e-25 119.0 86 66.3
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 2.0e-25 119.0 86 66.3
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 3.4e-25 118.2 98 64.3
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.4e-25 118.2 86 65.1
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.4e-25 118.2 84 67.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 3.4e-25 118.2 87 67.8
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 5.8e-25 117.5 87 65.5
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 9.9e-25 116.7 92 57.6
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 9.9e-25 116.7 84 66.7
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 1.3e-24 116.3 87 69.0
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.3e-24 116.3 86 66.3
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.3e-24 116.3 86 65.1
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 2.2e-24 115.5 88 64.8
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.2e-24 115.5 87 65.5
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 2.9e-24 115.2 89 61.8
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.9e-24 115.2 86 65.1
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 3.8e-24 114.8 87 66.7
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.9e-24 114.4 87 57.5
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 4.9e-24 114.4 85 63.5
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 4.9e-24 114.4 87 58.6
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 4.9e-24 114.4 85 67.1
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 8.4e-24 113.6 89 61.8
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 8.4e-24 113.6 89 65.2
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.1e-23 113.2 87 65.5
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.1e-23 113.2 86 62.8
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.4e-23 112.8 88 63.6
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.4e-23 112.8 86 62.8
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.9e-23 112.5 87 65.5
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 2.4e-23 112.1 87 65.5
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 2.4e-23 112.1 86 65.1
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 2.4e-23 112.1 87 65.5
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.4e-23 112.1 87 66.7
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.4e-23 112.1 87 66.7
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.4e-23 112.1 86 61.6
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 3.2e-23 111.7 86 60.5
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.2e-23 111.7 86 61.6
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.2e-23 111.7 87 65.5
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 3.2e-23 111.7 88 63.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 5.5e-23 110.9 87 62.1
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 5.5e-23 110.9 87 62.1
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 5.5e-23 110.9 87 62.1
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 5.5e-23 110.9 86 60.5
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 7.1e-23 110.5 87 64.4
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 7.1e-23 110.5 87 63.2
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 7.1e-23 110.5 86 65.1
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 7.1e-23 110.5 87 66.7
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 9.3e-23 110.2 86 59.3
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 9.3e-23 110.2 87 60.9
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 9.3e-23 110.2 87 60.9
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 9.3e-23 110.2 86 62.8
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 9.3e-23 110.2 92 60.9
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 9.3e-23 110.2 86 62.8
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.2e-22 109.8 86 61.6
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.2e-22 109.8 87 65.5
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.6e-22 109.4 86 60.5
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.6e-22 109.4 86 64.0
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.1e-22 109.0 86 60.5
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.1e-22 109.0 87 62.1
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 2.7e-22 108.6 86 59.3
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 2.7e-22 108.6 89 59.6
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 3.5e-22 108.2 86 60.5
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 3.5e-22 108.2 86 60.5
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 3.5e-22 108.2 86 60.5
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 4.6e-22 107.8 87 59.8
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 4.6e-22 107.8 87 59.8
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 4.6e-22 107.8 87 59.8
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 4.6e-22 107.8 87 60.9
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 4.6e-22 107.8 86 60.5
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 4.6e-22 107.8 86 60.5
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 4.6e-22 107.8 86 58.1
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 6.0e-22 107.5 87 59.8
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 6.0e-22 107.5 86 59.3
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 7.9e-22 107.1 90 58.9
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 7.9e-22 107.1 87 63.2
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 7.9e-22 107.1 87 59.8
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.0e-21 106.7 87 59.8
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.0e-21 106.7 87 59.8
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.0e-21 106.7 86 60.5
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.0e-21 106.7 88 61.4
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.0e-21 106.7 87 60.9
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.0e-21 106.7 86 60.5
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.8e-21 105.9 86 58.1
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 2.3e-21 105.5 88 58.0
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 2.3e-21 105.5 87 60.9
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 2.3e-21 105.5 86 58.1
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 3.0e-21 105.1 86 59.3
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 3.9e-21 104.8 86 55.8
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 5.1e-21 104.4 85 57.6
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 6.7e-21 104.0 85 58.8
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 6.7e-21 104.0 85 58.8
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 6.7e-21 104.0 86 54.7
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 6.7e-21 104.0 86 55.8
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.5e-20 102.8 87 56.3
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.5e-20 102.1 86 54.7
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 2.5e-20 102.1 86 54.7
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 4.3e-20 101.3 86 54.7
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 4.3e-20 101.3 87 57.5
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 5.6e-20 100.9 87 59.8
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 7.4e-20 100.5 86 57.0
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 7.4e-20 100.5 86 55.8
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 7.4e-20 100.5 86 59.3
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 9.6e-20 100.1 88 56.8
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.3e-19 99.8 86 57.0
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.3e-19 99.8 87 57.5
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 3.7e-19 98.2 90 55.6
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 3.7e-19 98.2 86 55.8
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 4.8e-19 97.8 87 58.6
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 4.8e-19 97.8 85 50.6
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 6.2e-19 97.4 87 57.5
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 6.2e-19 97.4 86 54.7
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 8.2e-19 97.1 90 56.7
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 8.2e-19 97.1 69 71.0
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.8e-18 95.9 87 57.5
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 2.4e-18 95.5 88 56.8
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 3.1e-18 95.1 87 55.2
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 9.0e-18 93.6 87 55.2
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 3.4e-17 91.7 82 54.9
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 3.4e-17 91.7 85 55.3
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 5.8e-17 90.9 86 54.7
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 5.8e-17 90.9 87 54.0
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.3e-16 89.7 86 48.8
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 1.7e-16 89.4 87 52.9
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 4.9e-16 87.8 65 66.2
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 4.9e-16 87.8 95 50.5
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 4.2e-15 84.7 67 61.2
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 9.3e-15 83.6 63 63.5
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.2e-14 83.2 86 48.8
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 4.6e-14 81.3 93 44.1
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.8e-13 79.3 86 45.3
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 2.3e-13 79.0 87 44.8
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 3.3e-12 75.1 84 48.8
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 5.7e-12 74.3 89 50.6
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 7.4e-12 73.9 58 63.8
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 7.4e-12 73.9 65 60.0
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.3e-11 73.2 90 41.1
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.6e-11 72.8 79 45.6
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.1e-10 70.1 90 40.0
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.7e-08 62.8 87 39.1
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 5.0e-08 61.2 43 72.1
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.5e-07 58.9 85 36.5
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 6.1e-06 54.3 79 36.7
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 6.1e-06 54.3 79 36.7


User provided reference genes

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