Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.5e-37 159.1 82 100.0
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.3e-36 156.0 82 98.8
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.6e-28 129.0 82 84.1
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 3.3e-21 104.8 82 67.1
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.3e-21 104.8 82 73.2
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 9.6e-21 103.2 82 64.6
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 3.7e-20 101.3 82 65.9
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 2.2e-17 92.0 82 59.8
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 8.4e-17 90.1 82 59.8
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 2.5e-16 88.6 82 62.2
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 5.5e-16 87.4 82 59.8
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 6.0e-15 84.0 77 62.3
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 6.0e-15 84.0 82 59.8
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 1.3e-14 82.8 82 61.0
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 3.0e-14 81.6 82 59.8
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 5.1e-14 80.9 82 52.4
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.1e-13 79.7 82 58.5
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.1e-13 79.7 82 58.5
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 1.9e-13 79.0 82 53.7
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 2.5e-13 78.6 82 57.3
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 2.5e-13 78.6 82 52.4
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 5.7e-13 77.4 82 51.2
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 1.3e-12 76.3 82 51.2
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.6e-12 75.9 82 50.0
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 1.6e-12 75.9 81 48.1
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 1.6e-12 75.9 82 52.4
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 2.1e-12 75.5 82 50.0
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 2.1e-12 75.5 82 51.2
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 2.1e-12 75.5 82 51.2
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 2.1e-12 75.5 85 48.2
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 2.8e-12 75.1 82 50.0
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 3.7e-12 74.7 82 51.2
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 3.7e-12 74.7 81 54.3
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 4.8e-12 74.3 82 51.2
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 4.8e-12 74.3 82 51.2
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 6.2e-12 73.9 82 51.2
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 1.1e-11 73.2 82 51.2
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 1.1e-11 73.2 73 58.9
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 1.4e-11 72.8 82 47.6
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 1.8e-11 72.4 82 51.2
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 1.8e-11 72.4 82 50.0
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 2.4e-11 72.0 85 45.9
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 6.9e-11 70.5 82 48.8
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 1.5e-10 69.3 82 53.7
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 1.5e-10 69.3 82 48.8
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 2.6e-10 68.6 77 51.9
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 2.6e-10 68.6 77 51.9
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 4.5e-10 67.8 82 50.0
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 4.5e-10 67.8 80 50.0
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 5.8e-10 67.4 71 50.7
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 7.6e-10 67.0 82 47.6
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 2.2e-09 65.5 84 47.6
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 2.9e-09 65.1 83 45.8
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 5.0e-09 64.3 82 46.3
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 6.5e-09 63.9 82 43.9
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 1.1e-08 63.2 82 48.8
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 1.4e-08 62.8 38 73.7
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 1.9e-08 62.4 82 46.3
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.9e-08 62.4 75 53.3
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 2.5e-08 62.0 83 44.6
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 2.5e-08 62.0 86 46.5
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 3.2e-08 61.6 81 44.4
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 3.2e-08 61.6 81 44.4
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 3.2e-08 61.6 81 42.0
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 3.2e-08 61.6 82 45.1
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 7.1e-08 60.5 79 44.3
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 7.1e-08 60.5 82 46.3
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 7.1e-08 60.5 81 43.2
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 7.1e-08 60.5 82 43.9
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 7.1e-08 60.5 82 42.7
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 9.3e-08 60.1 82 42.7
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 1.2e-07 59.7 81 43.2
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 1.6e-07 59.3 71 50.7
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.6e-07 59.3 82 43.9
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 2.1e-07 58.9 82 43.9
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 2.1e-07 58.9 82 43.9
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 4.6e-07 57.8 79 43.0
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 4.6e-07 57.8 68 51.5
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 4.6e-07 57.8 68 51.5
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 6.1e-07 57.4 71 50.7
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.3e-06 56.2 82 42.7
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 3.9e-06 54.7 77 41.6
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 5.1e-06 54.3 38 71.1


User provided reference genes

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