Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041220 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 6.6e-128 460.7 229 100.0
CSS0014670 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 4.3e-127 458.0 229 99.1
Rhsim07G0124500 Rhododendron simsii HOM05D006861 ORTHO05D008620 4.8e-102 374.8 232 81.9
Actinidia14818 Actinidia chinensis HOM05D006861 ORTHO05D008620 6.2e-102 374.4 229 82.5
Dinv28930 Davidia involucrata HOM05D006861 ORTHO05D008620 9.3e-98 360.5 229 78.6
Hma1.2p1_0585F.1_g183570 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 2.0e-92 342.8 227 74.9
Manes.17G013800 Manihot esculenta HOM05D006861 ORTHO05D008620 1.6e-89 333.2 222 75.2
vmacro14159 Vaccinium macrocarpon HOM05D006861 ORTHO05D008620 4.6e-89 331.6 207 80.2
Potri.003G089400 Populus trichocarpa HOM05D006861 ORTHO05D008620 3.0e-88 328.9 227 71.4
GSVIVG01013176001 Vitis vinifera HOM05D006861 ORTHO05D008620 8.8e-88 327.4 213 73.7
Prupe.5G041200 Prunus persica HOM05D006861 ORTHO05D008620 3.3e-87 325.5 231 68.8
Thecc.03G231500 Theobroma cacao HOM05D006861 ORTHO05D008620 2.2e-86 322.8 219 72.6
Lsat_1_v5_gn_8_112001 Lactuca sativa HOM05D006861 ORTHO05D008620 2.8e-86 322.4 225 70.2
QL12p006269 Quercus lobata HOM05D006861 ORTHO05D008620 4.8e-86 321.6 230 70.9
CANSAT21G0325 Cannabis sativa HOM05D006861 ORTHO05D008620 1.8e-85 319.7 225 70.7
DCAR_008287 Daucus carota HOM05D006861 ORTHO05D008620 3.1e-85 318.9 217 72.4
Medtr4g098640 Medicago truncatula HOM05D006861 ORTHO05D008620 2.0e-84 316.2 229 69.9
RcHm_v2.0_Chr7g0209081 Rosa chinensis HOM05D006861 ORTHO05D008620 4.5e-84 315.1 223 70.0
Duzib205G0961 Durio zibethinus HOM05D006861 ORTHO05D008620 5.9e-84 314.7 219 71.2
Sabra03G0059200 Salix brachista HOM05D006861 ORTHO05D008620 5.9e-84 314.7 227 69.2
Haze_08270 Corylus avellana HOM05D006861 ORTHO05D008620 1.3e-83 313.5 233 70.0
MD06G1031100 Malus domestica HOM05D006861 ORTHO05D008620 1.7e-83 313.2 212 71.7
HanXRQChr16g0511531 Helianthus annuus HOM05D006861 ORTHO05D008620 2.9e-83 312.4 213 69.5
TPR.G28655 Trifolium pratense HOM05D006861 ORTHO05D008620 3.8e-83 312.0 217 71.9
Cfa012408 Carpinus fangiana HOM05D006861 ORTHO05D008620 5.0e-83 311.6 213 73.7
Duzib068G0493 Durio zibethinus HOM05D006861 ORTHO05D008620 6.5e-83 311.2 219 70.8
CiPaw.11G090800 Carya illinoinensis HOM05D006861 ORTHO05D008620 1.9e-82 309.7 224 68.3
Gohir.A12G209800 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.9e-82 309.7 219 70.8
Sc07g0008780 Simmondsia chinensis HOM05D006861 ORTHO05D008620 5.5e-82 308.1 232 65.1
Ca_22062_v3 Cicer arietinum L. HOM05D006861 ORTHO05D008620 1.6e-81 306.6 218 71.1
QL12p006401 Quercus lobata HOM05D006861 ORTHO05D008620 1.6e-81 306.6 185 78.9
Cc08_g02400 Coffea canephora HOM05D006861 ORTHO05D008620 2.1e-81 306.2 234 68.8
ECA233G2855 Erigeron canadensis HOM05D006861 ORTHO05D008620 2.1e-81 306.2 224 68.3
Psat4g079280 Pisum sativum HOM05D006861 ORTHO05D008620 2.1e-81 306.2 217 70.5
Glyma.17G153700 Glycine max HOM05D006861 ORTHO05D008620 2.7e-81 305.8 216 70.8
Gohir.D03G170200 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.7e-81 305.8 219 68.9
Gorai.003G180500 Gossypium raimondii HOM05D006861 ORTHO05D008620 2.7e-81 305.8 219 68.9
Gohir.D12G212500 Gossypium hirsutum HOM05D006861 ORTHO05D008620 6.1e-81 304.7 219 69.9
Lj4g0014575 Lotus japonicus HOM05D006861 ORTHO05D008620 2.3e-80 302.8 229 67.2
FvH4_5g21620 Fragaria vesca HOM05D006861 ORTHO05D008620 3.0e-80 302.4 231 65.4
arahy.Tifrunner.gnm1.ann1.A00F14 Arachis hypogaea HOM05D006861 ORTHO05D008620 3.9e-80 302.0 212 71.2
Lalb_Chr09g0329521 Lupinus albus HOM05D006861 ORTHO05D008620 3.9e-80 302.0 212 70.8
Glyma.05G113600 Glycine max HOM05D006861 ORTHO05D008620 8.8e-80 300.8 216 70.4
TAR629G3318 Trochodendron aralioides HOM05D006861 ORTHO05D008620 8.8e-80 300.8 217 68.7
Migut.A01006 Erythranthe guttata HOM05D006861 ORTHO05D008620 1.1e-79 300.4 217 67.3
Gohir.A03G002100 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.1e-79 300.4 219 68.0
Ciclev10032685m.g Citrus clementina HOM05D006861 ORTHO05D008620 1.5e-79 300.1 225 67.1
Eucgr.D02180 Eucalyptus grandis HOM05D006861 ORTHO05D008620 1.5e-79 300.1 219 68.0
Aqoxy3G02463 Aquilegia oxysepala HOM05D006861 ORTHO05D008620 2.0e-79 299.7 212 68.9
FAN18G0349 Fragaria x ananassa HOM05D006861 ORTHO05D008620 2.0e-79 299.7 228 65.4
SalBow6G5529 Salvia bowleyana HOM05D006861 ORTHO05D008620 2.0e-79 299.7 217 67.3
arahy.Tifrunner.gnm1.ann1.P9U8RJ Arachis hypogaea HOM05D006861 ORTHO05D008620 2.6e-79 299.3 212 70.3
VMungo0251G0361 Vigna mungo HOM05D006861 ORTHO05D008620 2.6e-79 299.3 217 69.1
Gorai.008G228100 Gossypium raimondii HOM05D006861 ORTHO05D008620 3.3e-79 298.9 230 67.0
Nitab4.5_0000535g0140 Nicotiana tabacum HOM05D006861 ORTHO05D008620 7.4e-79 297.7 229 63.3
THA.LOC104807964 Tarenaya hassleriana HOM05D006861 ORTHO05D008620 9.7e-79 297.4 229 63.3
ATR0049G013 Amborella trichopoda HOM05D006861 ORTHO05D008620 2.2e-78 296.2 212 65.6
AUR62007255 Chenopodium quinoa HOM05D006861 ORTHO05D008620 2.2e-78 296.2 225 65.8
MSTRG.12154 Avicennia marina HOM05D006861 ORTHO05D008620 3.7e-78 295.4 217 65.0
PSO782G3300 Papaver somniferum HOM05D006861 ORTHO05D008620 1.1e-77 293.9 216 67.1
PSO063G6338 Papaver somniferum HOM05D006861 ORTHO05D008620 2.4e-77 292.7 216 66.7
FAN04G0264 Fragaria x ananassa HOM05D006861 ORTHO05D008620 9.1e-77 290.8 224 65.2
FAN08G0129 Fragaria x ananassa HOM05D006861 ORTHO05D008620 4.5e-76 288.5 231 63.2
PGSC0003DMG400020500 Solanum tuberosum HOM05D006861 ORTHO05D008620 5.9e-76 288.1 217 63.6
Nitab4.5_0007026g0050 Nicotiana tabacum HOM05D006861 ORTHO05D008620 1.0e-75 287.3 235 61.3
Ah.12g054700 Amaranthus hybridus HOM05D006861 ORTHO05D008620 1.7e-75 286.6 225 66.2
EL10Ac5g12163 Beta vulgaris HOM05D006861 ORTHO05D008620 6.5e-75 284.6 221 65.6
COL.COLO4_17076 Corchorus olitorius HOM05D006861 ORTHO05D008620 6.5e-75 284.6 219 63.5
SGA_v2.0_scaffold198G41105 Striga asiatica HOM05D006861 ORTHO05D008620 8.5e-75 284.3 217 65.4
Solyc08g007030.3 Solanum lycopersicum HOM05D006861 ORTHO05D008620 2.5e-74 282.7 217 62.7
Peaxi162Scf00102g00630 Petunia axillaris HOM05D006861 ORTHO05D008620 3.2e-74 282.3 229 62.9
MELO3C013865.2 Cucumis melo HOM05D006861 ORTHO05D008620 1.6e-73 280.0 224 61.6
Sopen08g002990 Solanum pennellii HOM05D006861 ORTHO05D008620 1.6e-73 280.0 217 62.2
ClCG10G001830 Citrullus lanatus HOM05D006861 ORTHO05D008620 3.6e-73 278.9 212 65.6
CAN.G845.34 Capsicum annuum HOM05D006861 ORTHO05D008620 4.7e-73 278.5 217 61.3
FAN13G1018 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.0e-72 277.3 228 61.4
CsaV3_3G001910 Cucumis sativus L. HOM05D006861 ORTHO05D008620 1.4e-72 276.9 212 64.2
Sed0027053 Sechium edule HOM05D006861 ORTHO05D008620 5.2e-72 275.0 218 61.9
HPP92_028475 Vanilla planifolia HOM05D006861 ORTHO05D008620 8.8e-72 274.2 214 62.1
HPP92_027725 Vanilla planifolia HOM05D006861 ORTHO05D008620 1.5e-71 273.5 214 62.1
Aa31LG9G15370 Aethionema arabicum HOM05D006861 ORTHO05D008620 2.6e-71 272.7 212 63.7
Hma1.2p1_0585F.1_g183580 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 7.4e-71 271.2 211 65.9
A05p10410 Brassica napus HOM05D006861 ORTHO05D008620 4.8e-70 268.5 219 60.7
Sp4g17580 Schrenkiella parvula HOM05D006861 ORTHO05D008620 5.3e-69 265.0 232 59.9
Carub.0004s1705 Capsella rubella HOM05D006861 ORTHO05D008620 1.6e-68 263.5 228 58.8
BcaB02g09437 Brassica carinata HOM05D006861 ORTHO05D008620 4.5e-68 261.9 216 61.1
TWI60G1564 Tripterygium wilfordii HOM05D006861 ORTHO05D008620 1.3e-67 260.4 223 60.5
BcaC02g11640 Brassica carinata HOM05D006861 ORTHO05D008620 1.7e-67 260.0 219 59.4
C04p12840 Brassica napus HOM05D006861 ORTHO05D008620 1.7e-67 260.0 219 59.4
BolC4t22928H Brassica oleracea HOM05D006861 ORTHO05D008620 1.7e-67 260.0 219 59.4
BraA05t19976Z Brassica rapa HOM05D006861 ORTHO05D008620 1.7e-67 260.0 219 59.4
Nn6g33632 Nelumbo nucifera HOM05D006861 ORTHO05D008620 2.9e-67 259.2 273 50.9
AT2G35360 Arabidopsis thaliana HOM05D006861 ORTHO05D008620 5.0e-67 258.5 229 57.6
CARHR129520 Cardamine hirsuta HOM05D006861 ORTHO05D008620 1.1e-66 257.3 233 56.7
Thhalv10017211m.g Eutrema salsugineum HOM05D006861 ORTHO05D008620 1.1e-66 257.3 229 58.5
Actinidia09224 Actinidia chinensis HOM05D006861 ORTHO05D008620 2.5e-66 256.1 139 87.1
AL4G31410 Arabidopsis lyrata HOM05D006861 ORTHO05D008620 2.5e-66 256.1 226 57.5
CDE12G0071 Ceratophyllum demersum HOM05D006861 ORTHO05D008620 9.4e-66 254.2 191 63.9
AUR62018744 Chenopodium quinoa HOM05D006861 ORTHO05D008620 8.0e-65 251.1 232 57.3
SEGI_11276 Sequoiadendron giganteum HOM05D006861 ORTHO05D008620 1.2e-63 247.3 214 54.7
Lj2A243G18 Lonicera japonica HOM05D006861 ORTHO05D008620 3.4e-63 245.7 145 79.3
Zm00001eb307090 Zea mays HOM05D006861 ORTHO05D008620 5.7e-63 245.0 221 55.7
Os09g0573100 Oryza sativa ssp. japonica HOM05D006861 ORTHO05D008620 7.5e-63 244.6 220 54.1
Dinv25198 Davidia involucrata HOM05D006861 ORTHO05D008620 1.2e-60 237.3 143 79.0
Phvul.003G229300 Phaseolus vulgaris HOM05D006861 ORTHO05D008620 1.0e-59 234.2 158 72.2
Gohir.A09G039700 Gossypium hirsutum HOM05D006861 ORTHO05D008620 8.8e-56 221.1 145 75.2
Cpa.g.sc90.59 Carica papaya HOM05D006861 ORTHO05D008620 5.7e-55 218.4 145 71.0
Pp3c1_27050 Physcomitrium patens HOM05D006861 ORTHO05D008620 5.4e-53 211.8 215 51.2
Hma1.2p1_2232F.1_g317620 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 3.5e-52 209.1 213 52.1
HanXRQChr16g0517491 Helianthus annuus HOM05D006861 ORTHO05D008620 6.6e-43 178.3 127 64.6
Atru.BG.44.p Acer truncatum HOM05D006861 ORTHO05D008620 2.0e-39 166.8 115 69.6
CBR_g57857 Chara braunii HOM05D006861 ORTHO05D008620 1.0e-27 127.9 192 38.5
Cre12.g533400 Chlamydomonas reinhardtii HOM05D006861 ORTHO05D008620 1.7e-14 84.0 223 28.7
Gohir.A01G114301 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.7e-12 76.6 56 71.4
PRCOL_00000188 Prasinoderma coloniale HOM05D006861 ORTHO05D008620 4.6e-12 75.9 118 36.4


User provided reference genes

Program Settings