Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.3e-269 931.0 439 100.0
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.8e-143 512.7 456 60.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.8e-143 512.7 456 60.5
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.7e-135 486.9 456 58.1
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.6e-133 479.6 462 56.7
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 3.5e-133 479.2 456 58.8
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.0e-132 477.6 456 57.5
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.8e-132 475.7 470 57.0
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 9.4e-131 471.1 472 55.1
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.4e-129 467.2 462 56.7
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 8.8e-129 464.5 447 57.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 4.4e-128 462.2 462 55.0
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 4.4e-128 462.2 457 55.1
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 9.7e-128 461.1 462 56.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.7e-127 460.3 455 55.2
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.8e-127 459.5 451 55.2
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.4e-126 457.2 465 55.7
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 2.4e-126 456.4 475 54.5
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.6e-125 453.8 456 55.3
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 2.0e-125 453.4 452 54.4
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 3.5e-125 452.6 463 52.9
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.3e-124 450.7 462 53.7
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 5.0e-124 448.7 461 54.2
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 6.5e-124 448.4 462 55.4
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.1e-123 447.6 456 55.7
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.5e-123 447.2 462 53.2
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 4.2e-123 445.7 454 54.6
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 7.2e-123 444.9 463 54.4
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 9.4e-123 444.5 462 55.6
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.2e-122 444.1 456 55.3
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 2.1e-122 443.4 454 54.0
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.4e-121 440.7 459 53.6
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.3e-121 439.9 456 53.9
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.2e-120 437.6 488 52.5
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 2.6e-120 436.4 459 52.1
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 3.4e-120 436.0 457 54.3
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 3.4e-120 436.0 458 53.1
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 9.7e-120 434.5 459 51.9
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.2e-119 433.3 464 52.6
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.8e-118 430.3 456 52.4
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.4e-118 429.9 479 53.2
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 5.3e-118 428.7 460 52.4
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.0e-117 426.8 454 52.2
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 3.5e-117 426.0 453 52.8
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 5.9e-117 425.2 452 51.3
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.7e-116 423.7 446 53.8
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.5e-115 419.9 433 54.3
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 4.2e-115 419.1 464 51.3
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.5e-115 418.7 438 53.7
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-114 416.8 458 49.8
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-114 416.4 458 49.8
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.7e-114 416.4 452 51.3
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.6e-114 416.0 473 51.2
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 4.7e-114 415.6 427 53.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 4.7e-114 415.6 457 51.4
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 4.7e-114 415.6 458 51.1
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 6.1e-114 415.2 458 49.6
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.0e-113 414.5 386 57.3
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.8e-113 413.7 468 51.1
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.8e-113 413.7 434 53.7
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.3e-113 413.3 474 50.8
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 6.8e-113 411.8 456 50.4
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.5e-112 410.6 433 53.6
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.0e-112 410.2 454 49.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.4e-112 409.5 459 51.2
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.5e-112 408.3 458 51.3
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 9.8e-112 407.9 392 55.6
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.3e-111 407.5 427 53.6
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.7e-111 407.1 488 49.2
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 3.7e-111 406.0 456 50.4
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 4.8e-111 405.6 394 55.6
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-110 404.4 473 47.8
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.1e-110 401.4 460 52.2
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 9.1e-110 401.4 453 49.9
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 4.5e-109 399.1 414 55.1
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 3.3e-107 392.9 495 47.1
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 4.2e-107 392.5 467 48.2
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 9.5e-107 391.3 463 48.4
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.0e-105 387.9 463 48.2
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-105 387.5 442 48.6
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 5.2e-105 385.6 464 49.6
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 6.8e-105 385.2 462 47.4
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.9e-105 384.8 467 48.6
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 4.4e-104 382.5 465 47.3
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 4.4e-104 382.5 464 48.1
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 9.8e-104 381.3 463 47.1
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.7e-103 380.6 453 48.1
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.2e-103 380.2 463 46.9
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 2.4e-102 376.7 461 46.6
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 2.4e-102 376.7 461 46.6
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.4e-102 376.7 463 47.1
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 2.4e-102 376.7 465 46.5
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 4.1e-102 375.9 461 46.4
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 4.1e-102 375.9 485 46.6
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 5.4e-102 375.6 380 51.8
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 2.7e-101 373.2 445 47.0
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.7e-100 370.5 381 52.5
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.5e-99 367.5 410 51.2
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.6e-98 364.0 465 46.2
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.1e-98 363.6 486 46.7
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 2.6e-96 356.7 387 50.4
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.6e-96 356.7 376 52.7
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 2.6e-96 356.7 398 53.8
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 4.4e-96 355.9 327 57.2
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.3e-95 354.4 461 46.0
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.2e-95 353.6 458 45.0
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.2e-94 349.7 493 43.4
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.6e-93 347.4 394 51.5
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 3.9e-92 342.8 449 45.0
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.9e-91 340.5 408 47.3
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 4.3e-91 339.3 461 45.6
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 7.3e-91 338.6 400 48.0
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.7e-87 327.4 412 45.9
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 2.3e-84 317.0 536 39.2
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 5.1e-84 315.8 426 47.9
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 7.3e-83 312.0 417 41.7
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.4e-81 307.8 400 42.8
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 4.4e-80 302.8 390 44.6
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.1e-77 293.9 348 47.1
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 7.8e-77 292.0 389 45.2
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.8e-77 292.0 348 47.1
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.2e-73 279.3 369 45.0
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 6.6e-68 262.3 238 58.4
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.3e-67 260.0 377 41.6
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 4.8e-66 256.1 255 54.1
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.4e-65 254.6 254 53.1
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.5e-59 234.6 229 55.9
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.9e-59 234.2 372 37.1
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 4.5e-56 223.0 233 54.5
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.6e-53 214.5 295 46.4
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 3.5e-53 213.4 376 35.4
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 6.9e-49 199.1 382 34.8
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 8.4e-47 192.2 140 65.0
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.0e-36 158.7 108 70.4
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 9.7e-35 152.1 165 50.9
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 5.9e-32 142.9 88 72.7
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 6.5e-31 139.4 105 66.7
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.0e-28 130.6 131 51.9
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.1e-28 129.8 131 51.9
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-24 118.6 170 45.9
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 3.4e-24 117.1 84 67.9
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 5.0e-23 113.2 71 64.8
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.4e-22 111.7 85 61.2
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 4.7e-21 106.7 150 44.7
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 6.1e-21 106.3 167 42.5
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.3e-20 104.4 151 40.4
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 7.4e-19 99.4 53 81.1
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.6e-16 91.7 71 66.2
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.9e-16 89.7 131 41.2
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.8e-15 87.0 94 48.9
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.8e-10 70.1 42 69.0
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.4e-09 67.8 36 80.6
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.9e-07 60.8 43 67.4
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.9e-06 58.2 70 42.9


User provided reference genes

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