Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008436 Camellia sinensis var. sinensis HOM05D001936 ORTHO05D033889 5.0e-31 137.1 68 100.0
CSS0041213 Camellia sinensis var. sinensis HOM05D001936 ORTHO05D033889 5.0e-31 137.1 68 100.0
CSS0005759 Camellia sinensis var. sinensis HOM05D001936 ORTHO05D002296 1.0e-12 76.3 42 92.9
CSS0038747 Camellia sinensis var. sinensis HOM05D001936 ORTHO05D002296 1.0e-12 76.3 42 92.9
Dinv36701 Davidia involucrata HOM05D001936 ORTHO05D002296 1.4e-12 75.9 42 92.9
GSVIVG01015322001 Vitis vinifera HOM05D001936 ORTHO05D002296 1.4e-12 75.9 42 92.9
Nn2g11619 Nelumbo nucifera HOM05D001936 ORTHO05D002296 3.0e-12 74.7 42 90.5
Nn8g39124 Nelumbo nucifera HOM05D001936 ORTHO05D002296 3.0e-12 74.7 42 90.5
CDE02G4470 Ceratophyllum demersum HOM05D001936 ORTHO05D002296 5.2e-12 73.9 42 90.5
HPP92_022974 Vanilla planifolia HOM05D001936 ORTHO05D002296 5.2e-12 73.9 42 88.1
Dinv41658 Davidia involucrata HOM05D001936 ORTHO05D002296 6.8e-12 73.6 42 90.5
Hma1.2p1_0945F.1_g240290 Hydrangea macrophylla HOM05D001936 ORTHO05D002296 1.5e-11 72.4 42 85.7
PSO173G0028 Papaver somniferum HOM05D001936 ORTHO05D002296 2.0e-11 72.0 42 90.5
PSO824G0041 Papaver somniferum HOM05D001936 ORTHO05D002296 2.0e-11 72.0 42 90.5
CDE08G0522 Ceratophyllum demersum HOM05D001936 ORTHO05D002296 2.6e-11 71.6 42 88.1
Gohir.A06G066300 Gossypium hirsutum HOM05D001936 ORTHO05D002296 3.4e-11 71.2 42 88.1
Gohir.D06G064800 Gossypium hirsutum HOM05D001936 ORTHO05D002296 3.4e-11 71.2 42 88.1
Gorai.010G075800 Gossypium raimondii HOM05D001936 ORTHO05D002296 3.4e-11 71.2 42 88.1
SEGI_32760 Sequoiadendron giganteum HOM05D001936 ORTHO05D002296 3.4e-11 71.2 42 85.7
Aqoxy7G01478 Aquilegia oxysepala HOM05D001936 ORTHO05D002296 4.4e-11 70.9 42 88.1
CANSAT56G4264 Cannabis sativa HOM05D001936 ORTHO05D002296 4.4e-11 70.9 42 88.1
Lj7C662T16 Lonicera japonica HOM05D001936 ORTHO05D002296 4.4e-11 70.9 42 88.1
MBI01_g18388_MAGBIO Magnolia biondii HOM05D001936 ORTHO05D002296 4.4e-11 70.9 42 85.7
CAN.G1349.4 Capsicum annuum HOM05D001936 ORTHO05D002296 5.7e-11 70.5 42 88.1
CAN.G2308.1 Capsicum annuum HOM05D001936 ORTHO05D002296 5.7e-11 70.5 42 88.1
Migut.K00526 Erythranthe guttata HOM05D001936 ORTHO05D002296 5.7e-11 70.5 42 88.1
TAR383G0172 Trochodendron aralioides HOM05D001936 ORTHO05D002296 5.7e-11 70.5 42 88.1
Lsat_1_v5_gn_5_143841 Lactuca sativa HOM05D001936 ORTHO05D002296 7.5e-11 70.1 42 85.7
Os05g0519900 Oryza sativa ssp. japonica HOM05D001936 ORTHO05D002296 7.5e-11 70.1 42 83.3
TAR624G1374 Trochodendron aralioides HOM05D001936 ORTHO05D002296 7.5e-11 70.1 42 88.1
Zm00001eb293760 Zea mays HOM05D001936 ORTHO05D002296 7.5e-11 70.1 42 83.3
Lalb_Chr14g0371791 Lupinus albus HOM05D001936 ORTHO05D002296 9.8e-11 69.7 42 85.7
Lalb_Chr24g0397351 Lupinus albus HOM05D001936 ORTHO05D002296 9.8e-11 69.7 42 85.7
Potri.018G086000 Populus trichocarpa HOM05D001936 ORTHO05D002296 9.8e-11 69.7 42 85.7
Sabra18G0074300 Salix brachista HOM05D001936 ORTHO05D002296 9.8e-11 69.7 42 85.7
vmacro06242 Vaccinium macrocarpon HOM05D001936 ORTHO05D002296 9.8e-11 69.7 42 85.7
MSTRG.10610 Avicennia marina HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
Ciclev10007513m.g Citrus clementina HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
Cc06_g10280 Coffea canephora HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
COL.COLO4_34777 Corchorus olitorius HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
Duzib150G0398 Durio zibethinus HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
Duzib168G2362 Durio zibethinus HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
ECA234G1503 Erigeron canadensis HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 83.3
Eucgr.C01008 Eucalyptus grandis HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
Manes.16G110700 Manihot esculenta HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
Oeu053162.2 Olea europaea HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
SGA_v2.0_scaffold129G34177 Striga asiatica HOM05D001936 ORTHO05D002296 1.3e-10 69.3 42 85.7
arahy.Tifrunner.gnm1.ann1.392IT2 Arachis hypogaea HOM05D001936 ORTHO05D002296 1.7e-10 68.9 42 83.3
arahy.Tifrunner.gnm1.ann1.CN6NPZ Arachis hypogaea HOM05D001936 ORTHO05D002296 1.7e-10 68.9 42 85.7
MELO3C024710.2 Cucumis melo HOM05D001936 ORTHO05D002296 1.7e-10 68.9 42 85.7
CsaV3_1G024100 Cucumis sativus L. HOM05D001936 ORTHO05D002296 1.7e-10 68.9 42 85.7
DCAR_028666 Daucus carota HOM05D001936 ORTHO05D002296 1.7e-10 68.9 42 85.7
Lj2g0012154 Lotus japonicus HOM05D001936 ORTHO05D002296 1.7e-10 68.9 42 83.3
Pp3c12_3360 Physcomitrium patens HOM05D001936 ORTHO05D002296 1.7e-10 68.9 42 83.3
Pp3c12_3390 Physcomitrium patens HOM05D001936 ORTHO05D002296 1.7e-10 68.9 42 83.3
ATR0705G071 Amborella trichopoda HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 83.3
CSS0013277 Camellia sinensis var. sinensis HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 83.3
CSS0039523 Camellia sinensis var. sinensis HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 83.3
ClCG06G009030 Citrullus lanatus HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 83.3
DCAR_024701 Daucus carota HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 83.3
HanXRQChr10g0318371 Helianthus annuus HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 83.3
HanXRQChr16g0510631 Helianthus annuus HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 83.3
Lsat_1_v5_gn_8_96701 Lactuca sativa HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 83.3
Peaxi162Scf00047g01621 Petunia axillaris HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 85.7
Peaxi162Scf00665g00214 Petunia axillaris HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 85.7
Solyc12g008360.2 Solanum lycopersicum HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 85.7
Sopen12g003320 Solanum pennellii HOM05D001936 ORTHO05D002296 2.2e-10 68.6 42 85.7
Nitab4.5_0001004g0230 Nicotiana tabacum HOM05D001936 ORTHO05D002296 2.8e-10 68.2 42 85.7
Nitab4.5_0001886g0080 Nicotiana tabacum HOM05D001936 ORTHO05D002296 2.8e-10 68.2 42 85.7
Rhsim03G0238000 Rhododendron simsii HOM05D001936 ORTHO05D002296 2.8e-10 68.2 42 83.3
Rhsim03G0238600 Rhododendron simsii HOM05D001936 ORTHO05D002296 2.8e-10 68.2 42 83.3
SalBow5G5474 Salvia bowleyana HOM05D001936 ORTHO05D002296 2.8e-10 68.2 42 81.0
Sed0021039 Sechium edule HOM05D001936 ORTHO05D002296 2.8e-10 68.2 42 83.3
Hund09240 Selenicereus undatus HOM05D001936 ORTHO05D002296 2.8e-10 68.2 42 85.7
Sc08g0007870 Simmondsia chinensis HOM05D001936 ORTHO05D002296 2.8e-10 68.2 42 83.3
Atru.chr7.1438 Acer truncatum HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Ah.09g230770 Amaranthus hybridus HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
CAN.G1327.3 Capsicum annuum HOM05D001936 ORTHO05D033889 3.7e-10 67.8 42 83.3
Cfa003201 Carpinus fangiana HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Ca_11223_v3 Cicer arietinum L. HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Haze_25806 Corylus avellana HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Glyma.01G009300 Glycine max HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Glyma.16G077300 Glycine max HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Gohir.D13G200900 Gossypium hirsutum HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Gorai.013G229700 Gossypium raimondii HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Medtr1g114250 Medicago truncatula HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
QL02p042183 Quercus lobata HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Sed0026136 Sechium edule HOM05D001936 ORTHO05D002296 3.7e-10 67.8 41 85.4
Thecc.09G102900 Theobroma cacao HOM05D001936 ORTHO05D002296 3.7e-10 67.8 42 83.3
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
AL6G31200 Arabidopsis lyrata HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
AT5G19690 Arabidopsis thaliana HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
BcaB01g04835 Brassica carinata HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
BcaC04g19366 Brassica carinata HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
A03p09580 Brassica napus HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
A10p20030 Brassica napus HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
C03p11150 Brassica napus HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
C09p56490 Brassica napus HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
BraA03t10275Z Brassica rapa HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
BraA10t44077Z Brassica rapa HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
Carub.0006s1804 Capsella rubella HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
CARHR193220 Cardamine hirsuta HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
Duzib187G1737 Durio zibethinus HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 83.3
Thhalv10012742m.g Eutrema salsugineum HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
Phvul.004G170000 Phaseolus vulgaris HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 83.3
Sp6g24690 Schrenkiella parvula HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 81.0
THA.LOC104799059 Tarenaya hassleriana HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 83.3
THA.LOC104811086 Tarenaya hassleriana HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 83.3
TPR.G4144 Trifolium pratense HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 83.3
unitig_27.g24901 Utricularia gibba HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 83.3
VMungo0464G0978 Vigna mungo HOM05D001936 ORTHO05D002296 4.8e-10 67.4 42 83.3
Aa31LG1G8780 Aethionema arabicum HOM05D001936 ORTHO05D002296 6.3e-10 67.0 42 83.3
CiPaw.03G226600 Carya illinoinensis HOM05D001936 ORTHO05D002296 6.3e-10 67.0 42 83.3
Peaxi162Scf00001g10123 Petunia axillaris HOM05D001936 ORTHO05D002296 6.3e-10 67.0 42 78.6
SMO228G0096 Selaginella moellendorffii HOM05D001936 ORTHO05D002296 6.3e-10 67.0 42 83.3
Hund26250 Selenicereus undatus HOM05D001936 ORTHO05D002296 6.3e-10 67.0 42 83.3
TWI34G0078 Tripterygium wilfordii HOM05D001936 ORTHO05D002296 6.3e-10 67.0 42 83.3
TWI63G0351 Tripterygium wilfordii HOM05D001936 ORTHO05D002296 6.3e-10 67.0 42 83.3
FvH4_1g05850 Fragaria vesca HOM05D001936 ORTHO05D002296 1.1e-09 66.2 42 76.2
FAN19G1858 Fragaria x ananassa HOM05D001936 ORTHO05D002296 1.1e-09 66.2 42 76.2
FAN23G2074 Fragaria x ananassa HOM05D001936 ORTHO05D002296 1.1e-09 66.2 42 76.2
FAN26G1817 Fragaria x ananassa HOM05D001936 ORTHO05D002296 1.1e-09 66.2 42 76.2
FAN26G3424 Fragaria x ananassa HOM05D001936 ORTHO05D002296 1.1e-09 66.2 42 76.2
FAN28G1484 Fragaria x ananassa HOM05D001936 ORTHO05D002296 1.1e-09 66.2 42 76.2
Mapoly0108s0026 Marchantia polymorpha HOM05D001936 ORTHO05D002296 1.1e-09 66.2 42 78.6
Psat6g233280 Pisum sativum HOM05D001936 ORTHO05D002296 1.1e-09 66.2 42 81.0
AagrBONN_evm.TU.Sc2ySwM_117.1083 Anthoceros agrestis HOM05D001936 ORTHO05D002296 1.4e-09 65.9 42 81.0
CBR_g8744 Chara braunii HOM05D001936 ORTHO05D002296 1.4e-09 65.9 41 78.0
SHI02716 Sapria himalayana HOM05D001936 ORTHO05D002296 1.4e-09 65.9 42 81.0
MD02G1060500 Malus domestica HOM05D001936 ORTHO05D002296 1.8e-09 65.5 42 76.2
MD15G1194000 Malus domestica HOM05D001936 ORTHO05D002296 1.8e-09 65.5 42 76.2
Prupe.7G222300 Prunus persica HOM05D001936 ORTHO05D002296 1.8e-09 65.5 42 76.2
Zm00001eb152990 Zea mays HOM05D001936 ORTHO05D002296 4.1e-09 64.3 42 73.8
AUR62010922 Chenopodium quinoa HOM05D001936 ORTHO05D002296 7.0e-09 63.5 42 76.2
AUR62021433 Chenopodium quinoa HOM05D001936 ORTHO05D002296 7.0e-09 63.5 42 76.2
RcHm_v2.0_Chr2g0091521 Rosa chinensis HOM05D001936 ORTHO05D002296 7.0e-09 63.5 42 73.8
RcHm_v2.0_Chr2g0091601 Rosa chinensis HOM05D001936 ORTHO05D002296 7.0e-09 63.5 42 73.8
PGR142G1664 Punica granatum HOM05D001936 ORTHO05D002296 2.0e-08 62.0 42 76.2
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 4.5e-08 60.8 42 73.8
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 4.5e-08 60.8 42 73.8
BcaC03g13700 Brassica carinata HOM05D001936 ORTHO05D002296 2.9e-07 58.2 42 76.2
BNapus_Darmor_BZH_scaffold_38p02210 Brassica napus HOM05D001936 ORTHO05D002296 2.9e-07 58.2 42 76.2
BolC3t13585H Brassica oleracea HOM05D001936 ORTHO05D002296 1.1e-06 56.2 42 73.8
BolC9t58514H Brassica oleracea HOM05D001936 ORTHO05D002296 1.1e-06 56.2 42 73.8


User provided reference genes

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