Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 6.2e-106 387.5 199 100.0
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 2.7e-77 292.4 187 79.7
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 2.3e-68 262.7 188 72.3
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 1.9e-67 259.6 189 72.0
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.4e-65 253.4 188 69.7
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 7.2e-62 241.1 188 64.9
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.2e-61 240.4 189 67.2
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 1.2e-61 240.4 189 66.1
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 2.7e-61 239.2 172 68.6
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 1.4e-60 236.9 171 69.6
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.4e-60 236.9 189 66.1
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 8.8e-60 234.2 190 60.5
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 8.8e-60 234.2 188 63.8
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 1.5e-59 233.4 188 61.2
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 2.0e-59 233.0 192 62.0
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 2.0e-59 233.0 192 62.0
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 2.6e-59 232.6 171 67.8
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 3.3e-59 232.3 179 64.2
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 3.3e-59 232.3 187 63.6
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 5.7e-59 231.5 188 60.6
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 5.7e-59 231.5 172 64.5
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 2.2e-58 229.6 187 63.6
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 2.2e-58 229.6 187 63.6
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 3.7e-58 228.8 190 60.0
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 4.8e-58 228.4 176 64.2
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 6.3e-58 228.0 171 64.9
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 6.3e-58 228.0 166 67.5
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 8.2e-58 227.6 188 60.1
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 1.1e-57 227.3 183 60.1
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 1.4e-57 226.9 193 59.1
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 1.4e-57 226.9 179 63.7
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 1.8e-57 226.5 183 60.1
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 5.3e-57 224.9 169 65.7
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 5.3e-57 224.9 191 61.3
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 5.3e-57 224.9 173 63.0
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 6.9e-57 224.6 171 64.3
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 9.1e-57 224.2 166 66.3
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 2.0e-56 223.0 197 56.9
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 2.0e-56 223.0 176 61.4
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 3.4e-56 222.2 167 64.1
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 3.4e-56 222.2 167 65.3
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 7.7e-56 221.1 191 57.1
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 7.7e-56 221.1 192 58.9
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 1.0e-55 220.7 188 59.6
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.0e-55 220.7 191 57.6
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 1.7e-55 219.9 188 59.6
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 2.2e-55 219.5 191 57.6
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 2.2e-55 219.5 168 62.5
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 2.9e-55 219.2 171 62.6
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 3.8e-55 218.8 175 60.6
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 3.8e-55 218.8 169 64.5
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 1.1e-54 217.2 170 60.6
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 3.2e-54 215.7 187 58.3
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 3.2e-54 215.7 172 59.9
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 3.2e-54 215.7 178 60.1
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 5.5e-54 214.9 167 61.7
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 7.2e-54 214.5 190 57.4
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 7.2e-54 214.5 170 60.6
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 9.4e-54 214.2 179 59.2
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 1.6e-53 213.4 188 58.0
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 2.1e-53 213.0 145 68.3
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 3.6e-53 212.2 173 58.4
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 3.6e-53 212.2 180 57.2
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 6.1e-53 211.5 170 57.6
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 6.1e-53 211.5 180 58.3
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 1.0e-52 210.7 180 57.8
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 1.0e-52 210.7 166 65.1
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 1.0e-52 210.7 166 62.0
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 1.8e-52 209.9 188 58.0
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 3.0e-52 209.1 177 61.6
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 2.0e-51 206.5 174 62.1
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 7.4e-51 204.5 170 60.6
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 9.7e-51 204.1 183 55.7
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 1.3e-50 203.8 183 55.7
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 1.7e-50 203.4 178 61.2
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 3.7e-50 202.2 177 56.5
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 4.8e-50 201.8 156 67.3
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 1.8e-49 199.9 168 60.1
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 3.1e-49 199.1 173 56.1
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 4.1e-49 198.7 136 69.9
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 4.1e-49 198.7 162 59.9
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 9.1e-49 197.6 189 52.9
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 2.6e-48 196.1 138 66.7
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 7.7e-48 194.5 168 58.3
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 1.9e-46 189.9 144 65.3
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 2.6e-43 179.5 134 62.7
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 4.4e-43 178.7 146 61.6
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 1.3e-42 177.2 147 58.5
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 4.8e-42 175.3 212 48.6
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 8.2e-42 174.5 171 50.9
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 1.6e-40 170.2 173 49.7
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 1.6e-40 170.2 179 50.8
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 3.5e-40 169.1 163 50.9
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 4.5e-40 168.7 195 48.7
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 1.2e-37 160.6 122 63.9
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 2.3e-36 156.4 144 51.4
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 2.0e-35 153.3 116 65.5
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 7.0e-33 144.8 138 50.7
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 4.5e-32 142.1 167 46.1
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 4.4e-27 125.6 152 44.7
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.3e-26 124.0 91 70.3
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 3.7e-26 122.5 164 42.1
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.0e-23 114.4 55 96.4
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.2e-21 107.5 112 52.7
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 1.7e-18 97.1 58 75.9
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 2.9e-18 96.3 83 50.6
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 1.5e-14 84.0 75 53.3
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 5.6e-14 82.0 53 66.0
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 2.0e-08 63.5 96 37.5


User provided reference genes

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