Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041207 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 0.0e+00 1816.6 981 100.0
CSS0033857 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 1.9e-296 1022.7 958 65.6
Dinv17855 Davidia involucrata HOM05D005126 ORTHO05D006169 4.1e-275 951.8 1233 50.8
Rhsim13G0163000 Rhododendron simsii HOM05D005126 ORTHO05D006169 1.3e-268 930.2 1058 56.1
vmacro03741 Vaccinium macrocarpon HOM05D005126 ORTHO05D006169 7.4e-253 877.9 980 57.2
Actinidia05547 Actinidia chinensis HOM05D005126 ORTHO05D006169 1.5e-245 853.6 1005 56.0
DCAR_004173 Daucus carota HOM05D005126 ORTHO05D006169 5.6e-216 755.4 921 55.3
Lj2C276T6 Lonicera japonica HOM05D005126 ORTHO05D006169 1.5e-205 720.7 926 53.6
Actinidia26962 Actinidia chinensis HOM05D005126 ORTHO05D006169 1.7e-204 717.2 791 59.4
CSS0026607 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 1.4e-203 714.1 510 80.0
Nitab4.5_0000503g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 5.1e-201 705.7 1000 48.7
Nitab4.5_0006456g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 1.6e-199 700.7 1002 49.1
Prupe.4G030200 Prunus persica HOM05D005126 ORTHO05D006169 2.1e-199 700.3 1202 43.4
Peaxi162Scf00931g00055 Petunia axillaris HOM05D005126 ORTHO05D006169 4.7e-199 699.1 1002 48.7
Potri.011G032200 Populus trichocarpa HOM05D005126 ORTHO05D006169 1.4e-198 697.6 1256 41.7
PGSC0003DMG400021720 Solanum tuberosum HOM05D005126 ORTHO05D006169 2.6e-197 693.3 975 48.8
Sopen02g024620 Solanum pennellii HOM05D005126 ORTHO05D006169 2.9e-196 689.9 977 49.0
TAR624G1039 Trochodendron aralioides HOM05D005126 ORTHO05D006169 6.4e-196 688.7 1259 42.1
RcHm_v2.0_Chr5g0004701 Rosa chinensis HOM05D005126 ORTHO05D006169 3.2e-195 686.4 1115 44.8
Ciclev10007263m.g Citrus clementina HOM05D005126 ORTHO05D006169 4.6e-194 682.6 1210 42.0
Gohir.D06G212500 Gossypium hirsutum HOM05D005126 ORTHO05D006169 1.3e-193 681.0 1106 44.6
Sabra11G0025300 Salix brachista HOM05D005126 ORTHO05D006169 1.3e-193 681.0 1244 41.6
Sabra11G0019400 Salix brachista HOM05D005126 ORTHO05D006169 3.3e-192 676.4 1244 41.6
FvH4_3g03041 Fragaria vesca HOM05D005126 ORTHO05D006169 7.3e-192 675.2 1113 44.6
Gorai.010G253600 Gossypium raimondii HOM05D005126 ORTHO05D006169 7.3e-192 675.2 1106 44.3
Duzib160G0882 Durio zibethinus HOM05D005126 ORTHO05D006169 4.8e-191 672.5 1226 41.7
CiPaw.09G152800 Carya illinoinensis HOM05D005126 ORTHO05D006169 6.2e-191 672.2 1240 41.8
Gohir.A06G208600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 8.1e-191 671.8 1108 44.2
Cc02_g11860 Coffea canephora HOM05D005126 ORTHO05D006169 2.0e-189 667.2 924 49.5
FAN21G2838 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.0e-189 667.2 1113 44.3
Haze_06662 Corylus avellana HOM05D005126 ORTHO05D006169 4.4e-189 666.0 1248 41.3
Duzib192G0985 Durio zibethinus HOM05D005126 ORTHO05D006169 4.2e-187 659.4 1231 41.5
TWI63G0986 Tripterygium wilfordii HOM05D005126 ORTHO05D006169 1.2e-186 657.9 1244 40.8
Manes.15G164500 Manihot esculenta HOM05D005126 ORTHO05D006169 6.6e-185 652.1 1115 43.7
SalBow4G2671 Salvia bowleyana HOM05D005126 ORTHO05D006169 3.3e-184 649.8 948 47.2
Cfa000280 Carpinus fangiana HOM05D005126 ORTHO05D006169 8.1e-183 645.2 1233 41.1
Oeu015946.3 Olea europaea HOM05D005126 ORTHO05D006169 4.0e-182 642.9 917 50.4
Hma1.2p1_0809F.1_g221780 Hydrangea macrophylla HOM05D005126 ORTHO05D006169 1.3e-180 637.9 965 47.3
Potri.004G030500 Populus trichocarpa HOM05D005126 ORTHO05D006169 6.4e-180 635.6 1262 39.1
Lj4g0001880 Lotus japonicus HOM05D005126 ORTHO05D006169 8.4e-180 635.2 1191 41.1
CAN.G424.91 Capsicum annuum HOM05D005126 ORTHO05D006169 6.0e-178 629.0 1063 44.1
MD10G1310700 Malus domestica HOM05D005126 ORTHO05D006169 1.0e-177 628.2 1189 41.2
AUR62006818 Chenopodium quinoa HOM05D005126 ORTHO05D006169 3.9e-177 626.3 958 47.4
MBI07_g11719_MAGBIO Magnolia biondii HOM05D005126 ORTHO05D006169 1.1e-176 624.8 1090 43.9
QL05p077365 Quercus lobata HOM05D005126 ORTHO05D006169 1.1e-176 624.8 1238 40.1
MSTRG.4220 Avicennia marina HOM05D005126 ORTHO05D006169 5.6e-176 622.5 979 45.0
Sc05g0008390 Simmondsia chinensis HOM05D005126 ORTHO05D006169 5.6e-176 622.5 947 48.0
GSVIVG01006404001 Vitis vinifera HOM05D005126 ORTHO05D006169 7.4e-176 622.1 921 48.3
PSO832G1831 Papaver somniferum HOM05D005126 ORTHO05D006169 8.1e-175 618.6 1048 44.1
ECA236G2220 Erigeron canadensis HOM05D005126 ORTHO05D006169 5.3e-174 615.9 950 47.4
CANSAT35G0768 Cannabis sativa HOM05D005126 ORTHO05D006169 2.6e-173 613.6 1175 40.3
Gohir.A10G017400 Gossypium hirsutum HOM05D005126 ORTHO05D006169 4.9e-172 609.4 1150 41.7
arahy.Tifrunner.gnm1.ann1.7M140W Arachis hypogaea HOM05D005126 ORTHO05D006169 6.0e-170 602.4 1164 40.3
arahy.Tifrunner.gnm1.ann1.JX13SW Arachis hypogaea HOM05D005126 ORTHO05D006169 1.0e-169 601.7 1164 40.5
Hund23540 Selenicereus undatus HOM05D005126 ORTHO05D006169 5.7e-168 595.9 966 46.1
COL.COLO4_33008 Corchorus olitorius HOM05D005126 ORTHO05D006169 7.4e-168 595.5 1185 40.3
AUR62000477 Chenopodium quinoa HOM05D005126 ORTHO05D006169 4.8e-167 592.8 942 46.3
PSO210G4646 Papaver somniferum HOM05D005126 ORTHO05D006169 8.2e-167 592.0 1058 42.6
Nn1g03751 Nelumbo nucifera HOM05D005126 ORTHO05D006169 1.8e-166 590.9 1231 39.6
Migut.N00381 Erythranthe guttata HOM05D005126 ORTHO05D006169 2.4e-166 590.5 928 47.0
Aqoxy4G01910 Aquilegia oxysepala HOM05D005126 ORTHO05D006169 9.0e-166 588.6 1059 43.1
Eucgr.H00119 Eucalyptus grandis HOM05D005126 ORTHO05D006169 1.2e-165 588.2 1031 42.8
Glyma.07G187500 Glycine max HOM05D005126 ORTHO05D006169 1.3e-164 584.7 1184 39.4
Medtr4g092040 Medicago truncatula HOM05D005126 ORTHO05D006169 1.3e-164 584.7 1144 40.2
Ah.06g190720 Amaranthus hybridus HOM05D005126 ORTHO05D006169 1.9e-163 580.9 957 45.0
Glyma.08G061700 Glycine max HOM05D005126 ORTHO05D006169 3.5e-162 576.6 1187 39.7
Thecc.06G207200 Theobroma cacao HOM05D005126 ORTHO05D006169 9.7e-160 568.5 773 48.9
VMungo0251G0970 Vigna mungo HOM05D005126 ORTHO05D006169 3.7e-159 566.6 1208 38.2
Lalb_Chr09g0327171 Lupinus albus HOM05D005126 ORTHO05D006169 1.4e-158 564.7 1187 38.8
TPR.G13921 Trifolium pratense HOM05D005126 ORTHO05D006169 5.3e-158 562.8 1176 40.3
EL10Ac4g09560 Beta vulgaris HOM05D005126 ORTHO05D006169 1.5e-157 561.2 982 44.1
Ca_18455_v3 Cicer arietinum L. HOM05D005126 ORTHO05D006169 2.9e-156 557.0 1185 37.8
MD05G1335200 Malus domestica HOM05D005126 ORTHO05D006169 4.6e-154 549.7 765 48.2
PGR031G2928 Punica granatum HOM05D005126 ORTHO05D006169 7.9e-154 548.9 983 42.7
MELO3C007347.2 Cucumis melo HOM05D005126 ORTHO05D006169 3.0e-153 547.0 1180 39.2
Phvul.002G219000 Phaseolus vulgaris HOM05D005126 ORTHO05D006169 8.8e-153 545.4 1196 37.9
AL2G14430 Arabidopsis lyrata HOM05D005126 ORTHO05D006169 1.5e-152 544.7 1132 38.4
Aa31LG2G9130 Aethionema arabicum HOM05D005126 ORTHO05D006169 2.0e-152 544.3 1068 39.8
Psat7g105840 Pisum sativum HOM05D005126 ORTHO05D006169 5.7e-152 542.7 1163 39.0
Thhalv10023224m.g Eutrema salsugineum HOM05D005126 ORTHO05D006169 8.2e-151 538.9 1135 38.2
Carub.0002s0337 Capsella rubella HOM05D005126 ORTHO05D006169 6.9e-150 535.8 1117 38.3
Lsat_1_v5_gn_7_18540 Lactuca sativa HOM05D005126 ORTHO05D006169 2.2e-148 530.8 854 45.1
CARHR050640 Cardamine hirsuta HOM05D005126 ORTHO05D006169 2.9e-148 530.4 1049 39.8
BcaB04g20363 Brassica carinata HOM05D005126 ORTHO05D006169 7.2e-147 525.8 1076 39.6
A01p30560 Brassica napus HOM05D005126 ORTHO05D006169 1.2e-146 525.0 1067 39.6
BraA01t03188Z Brassica rapa HOM05D005126 ORTHO05D006169 2.1e-146 524.2 1067 39.6
Sed0023382 Sechium edule HOM05D005126 ORTHO05D006169 7.9e-146 522.3 1172 38.3
Sp2g02860 Schrenkiella parvula HOM05D005126 ORTHO05D006169 1.1e-144 518.5 1134 37.1
HanXRQChr05g0130831 Helianthus annuus HOM05D005126 ORTHO05D006169 5.7e-144 516.2 927 42.7
Oeu045309.1 Olea europaea HOM05D005126 ORTHO05D006169 4.8e-143 513.1 683 50.1
C01p38950 Brassica napus HOM05D005126 ORTHO05D006169 6.3e-143 512.7 1097 38.9
CsaV3_6G049470 Cucumis sativus L. HOM05D005126 ORTHO05D006169 1.1e-142 511.9 1183 37.4
BolC1t03845H Brassica oleracea HOM05D005126 ORTHO05D006169 1.4e-142 511.5 1097 38.9
unitig_736.g22481 Utricularia gibba HOM05D005126 ORTHO05D006169 7.0e-142 509.2 855 43.7
ATR0804G089 Amborella trichopoda HOM05D005126 ORTHO05D006169 2.0e-141 507.7 1085 39.4
ClCG01G022310 Citrullus lanatus HOM05D005126 ORTHO05D006169 2.9e-140 503.8 1214 36.9
Gorai.011G019500 Gossypium raimondii HOM05D005126 ORTHO05D006169 3.2e-139 500.4 986 40.7
AT1G61690 Arabidopsis thaliana HOM05D005126 ORTHO05D006169 5.5e-139 499.6 1112 37.1
Gohir.D10G017600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 9.4e-139 498.8 986 40.6
THA.LOC104809525 Tarenaya hassleriana HOM05D005126 ORTHO05D006169 2.8e-135 487.3 1156 36.9
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.3e-129 467.6 747 45.1
Zm00001eb245580 Zea mays HOM05D005126 ORTHO05D006169 5.2e-129 466.5 1009 38.8
SGA_v2.0_scaffold216G42402 Striga asiatica HOM05D005126 ORTHO05D006169 9.8e-128 462.2 939 41.4
TAR626G0500 Trochodendron aralioides HOM05D005126 ORTHO05D006169 1.3e-116 425.2 518 51.9
Os03g0669800 Oryza sativa ssp. japonica HOM05D005126 ORTHO05D006169 2.5e-99 367.9 834 36.3
Cpa.g.c45157 Carica papaya HOM05D005126 ORTHO05D006169 4.7e-98 363.6 440 51.8
SEGI_24274 Sequoiadendron giganteum HOM05D005126 ORTHO05D006169 1.2e-96 359.0 1309 30.9
CDE01G0539 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 1.9e-94 351.7 856 34.8
Cpa.g.sc871.1 Carica papaya HOM05D005126 ORTHO05D006169 1.5e-83 315.5 486 46.3
CDE12G0914 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 2.6e-72 278.1 615 39.0
SMO141G0003 Selaginella moellendorffii HOM05D005126 ORTHO05D006169 7.9e-69 266.5 968 31.3
HPP92_016843 Vanilla planifolia HOM05D005126 ORTHO05D006169 3.1e-65 254.6 435 40.7
Pp3c16_8350 Physcomitrium patens HOM05D005126 ORTHO05D006169 2.0e-56 225.3 892 29.4
AagrBONN_evm.TU.Sc2ySwM_368.2701 Anthoceros agrestis HOM05D005126 ORTHO05D006169 1.2e-53 216.1 834 30.7
Atru.chr10.2052 Acer truncatum HOM05D005126 ORTHO05D006169 3.3e-51 208.0 339 43.4
GSVIVG01002717001 Vitis vinifera HOM05D005126 ORTHO05D006169 3.3e-51 208.0 269 52.8
Oeu030881.1 Olea europaea HOM05D005126 ORTHO05D006169 5.7e-51 207.2 281 52.0
arahy.Tifrunner.gnm1.ann1.TF7ZQX Arachis hypogaea HOM05D005126 ORTHO05D006169 2.1e-50 205.3 329 42.6
BcaB04g20360 Brassica carinata HOM05D005126 ORTHO05D006169 6.9e-49 200.3 416 41.3
Prupe.4G011500 Prunus persica HOM05D005126 ORTHO05D006169 4.5e-48 197.6 590 33.2
GSVIVG01006464001 Vitis vinifera HOM05D005126 ORTHO05D006169 5.0e-47 194.1 417 39.3
FAN25G0472 Fragaria x ananassa HOM05D005126 ORTHO05D006169 1.3e-44 186.0 198 58.1
BcaB04g20358 Brassica carinata HOM05D005126 ORTHO05D006169 8.5e-39 166.8 400 38.0
TAR626G0260 Trochodendron aralioides HOM05D005126 ORTHO05D006169 3.6e-37 161.4 157 59.9
Mapoly0032s0118 Marchantia polymorpha HOM05D005126 ORTHO05D006169 1.5e-32 146.0 994 25.3
TAR626G1585 Trochodendron aralioides HOM05D005126 ORTHO05D006169 2.6e-32 145.2 303 38.9
Atru.chr10.2050 Acer truncatum HOM05D005126 ORTHO05D006169 1.3e-31 142.9 132 63.6
Atru.chr10.2054 Acer truncatum HOM05D005126 ORTHO05D006169 1.2e-29 136.3 128 60.9
SHI02133 Sapria himalayana HOM05D005126 ORTHO05D006169 6.1e-29 134.0 355 33.2
CDE12G0347 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 1.1e-27 129.8 668 28.1
MELO3C007345.2 Cucumis melo HOM05D005126 ORTHO05D006169 8.0e-21 107.1 360 32.5
CBR_g52260 Chara braunii HOM05D005126 ORTHO05D006169 1.3e-18 99.8 866 24.8
Psat2g029640 Pisum sativum HOM05D005126 ORTHO05D006169 1.7e-18 99.4 88 61.4
FvH4_3g03071 Fragaria vesca HOM05D005126 ORTHO05D006169 1.8e-17 95.9 182 42.3
FAN25G1652 Fragaria x ananassa HOM05D005126 ORTHO05D006169 1.2e-11 76.6 66 66.7
Actinidia26961 Actinidia chinensis HOM05D005126 ORTHO05D006169 1.3e-10 73.2 57 64.9
Psat2g029560 Pisum sativum HOM05D000058 ORTHO05D000077 3.7e-10 71.6 64 57.8
Psat7g158760 Pisum sativum HOM05D000555 ORTHO05D001906 5.9e-08 64.3 97 44.3


User provided reference genes

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