Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.7e-113 412.1 231 100.0
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 3.6e-97 358.6 217 81.6
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 6.7e-96 354.4 219 86.3
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 5.7e-95 351.3 211 82.0
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.1e-93 345.5 234 78.6
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.6e-92 343.2 217 77.0
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.6e-92 343.2 217 80.6
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 7.7e-92 340.9 217 77.0
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.7e-91 339.7 218 79.8
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 2.9e-91 339.0 238 78.6
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.8e-91 338.6 217 79.3
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 6.5e-91 337.8 218 79.4
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.5e-90 336.7 218 76.6
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.9e-90 336.3 218 79.4
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.5e-90 335.9 217 79.3
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 7.2e-90 334.3 235 77.4
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 7.2e-90 334.3 218 83.5
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.2e-89 333.6 220 75.9
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.6e-89 333.2 240 73.8
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 2.1e-89 332.8 237 77.2
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.7e-89 332.4 217 78.3
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 4.7e-89 331.6 228 72.8
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.8e-88 329.7 212 77.4
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.8e-88 329.7 219 74.4
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.8e-88 329.7 229 72.9
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 2.3e-88 329.3 218 76.1
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.0e-88 328.6 219 74.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 4.0e-88 328.6 218 77.1
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 6.8e-88 327.8 239 72.4
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.8e-88 327.8 217 77.0
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.8e-88 327.8 217 77.0
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.8e-88 327.4 239 72.4
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.8e-88 327.4 239 72.4
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.8e-88 327.4 239 72.4
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 8.8e-88 327.4 234 72.2
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.2e-87 327.0 227 73.6
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.2e-87 327.0 237 74.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.2e-87 327.0 239 72.0
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.5e-87 326.6 220 75.9
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.0e-87 326.2 219 73.5
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 2.6e-87 325.9 239 74.1
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.6e-87 325.9 217 78.3
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.4e-87 325.5 239 72.0
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 3.4e-87 325.5 218 76.1
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 4.4e-87 325.1 231 75.3
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 5.7e-87 324.7 238 72.7
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 9.8e-87 323.9 218 76.1
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.3e-86 323.6 231 73.6
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.3e-86 323.6 220 74.5
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.7e-86 323.2 219 75.3
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.2e-86 322.8 215 77.2
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.7e-86 322.0 231 73.2
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 3.7e-86 322.0 231 73.2
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 3.7e-86 322.0 217 76.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 4.1e-85 318.5 224 74.1
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.1e-85 318.5 220 74.5
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 7.0e-85 317.8 209 81.8
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 9.1e-85 317.4 213 76.1
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 9.1e-85 317.4 213 76.1
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.0e-84 316.2 209 74.6
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 3.5e-84 315.5 215 74.0
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 4.5e-84 315.1 237 72.6
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.5e-84 315.1 220 74.5
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 7.7e-84 314.3 235 67.2
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 3.8e-83 312.0 236 69.5
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 5.0e-83 311.6 217 71.9
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.3e-82 308.9 212 72.2
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 7.2e-82 307.8 234 76.9
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 7.2e-82 307.8 217 69.1
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.2e-81 307.0 209 74.2
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.2e-81 307.0 232 72.0
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 3.6e-81 305.4 212 71.2
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 4.7e-81 305.1 228 73.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 4.7e-81 305.1 228 73.2
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.8e-80 303.1 218 73.4
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 3.0e-80 302.4 238 70.6
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 4.0e-80 302.0 241 70.1
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 5.2e-80 301.6 211 70.6
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.5e-79 300.1 237 70.0
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.0e-79 299.7 221 69.7
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.7e-78 296.6 234 66.2
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.2e-78 296.2 215 70.7
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.8e-78 295.8 214 70.6
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 3.7e-78 295.4 201 80.6
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.4e-77 292.7 203 69.5
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 7.8e-76 287.7 228 68.9
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.7e-75 286.6 216 68.1
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 6.6e-75 284.6 203 69.5
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.3e-74 282.3 225 66.7
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 9.5e-74 280.8 220 65.0
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-73 280.4 235 68.9
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 4.7e-73 278.5 235 68.5
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 8.0e-73 277.7 221 63.8
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 4.0e-72 275.4 232 64.7
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 8.9e-72 274.2 232 64.2
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.2e-71 273.9 237 66.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.0e-71 273.1 213 63.8
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.6e-71 272.7 215 65.6
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 4.4e-71 271.9 208 67.3
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.7e-70 270.0 215 65.6
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 2.9e-70 269.2 237 64.1
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 2.9e-70 269.2 237 64.6
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 2.9e-70 269.2 237 64.1
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 3.7e-70 268.9 237 65.0
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 6.4e-70 268.1 237 63.7
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.4e-70 268.1 234 61.1
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.4e-70 268.1 220 63.6
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 8.3e-70 267.7 237 63.7
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.4e-69 266.9 237 63.7
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.9e-69 266.5 214 65.4
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 9.2e-69 264.2 238 61.8
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-68 263.8 215 64.7
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.2e-68 263.8 215 64.7
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.2e-68 263.8 215 64.7
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 4.6e-68 261.9 215 64.2
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 4.6e-68 261.9 220 60.5
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 6.0e-68 261.5 200 67.5
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.3e-67 260.4 204 66.2
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 3.9e-67 258.8 215 63.7
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 3.9e-67 258.8 203 63.5
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.1e-66 257.3 206 61.2
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 4.3e-66 255.4 142 85.2
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 9.5e-66 254.2 219 63.5
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 6.8e-64 248.1 208 59.6
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 2.0e-63 246.5 232 63.4
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.4e-61 240.4 231 59.7
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 5.6e-58 228.4 218 53.2
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.6e-57 226.9 174 67.2
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-53 214.2 175 65.1
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 4.6e-52 208.8 173 62.4
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 2.8e-49 199.5 120 80.0
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 6.2e-49 198.4 207 54.1
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.7e-46 190.3 120 71.7
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.2e-45 185.7 207 53.1
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.5e-42 176.4 135 70.4
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.5e-42 176.4 101 79.2
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.5e-42 176.4 108 71.3
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 2.8e-41 172.9 104 77.9
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 6.0e-20 102.1 62 77.4
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 3.7e-17 92.8 93 51.6


User provided reference genes

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