Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.6e-167 591.7 332 100.0
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.4e-165 585.1 335 98.8
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 2.5e-115 419.5 255 85.9
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 8.7e-113 411.0 329 70.2
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.1e-112 410.6 329 70.2
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.3e-111 407.1 253 79.4
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 2.2e-111 406.4 248 82.3
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 8.5e-108 394.4 263 75.7
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 2.5e-107 392.9 275 73.5
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 4.2e-107 392.1 263 76.0
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.5e-107 391.7 242 81.0
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 9.3e-107 391.0 273 75.5
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 1.6e-106 390.2 261 78.9
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 3.6e-106 389.0 351 64.7
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 4.6e-106 388.7 239 80.8
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.0e-105 387.5 244 80.7
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 8.7e-105 384.4 250 77.2
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 8.7e-105 384.4 262 71.8
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.1e-104 384.0 247 76.1
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.1e-104 384.0 275 70.9
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 1.5e-104 383.6 249 76.7
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.5e-104 382.9 253 77.1
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 2.5e-104 382.9 263 74.1
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 7.4e-104 381.3 257 75.5
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 9.7e-104 380.9 249 76.7
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.3e-103 380.6 262 71.4
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 1.3e-103 380.6 262 72.5
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 4.8e-103 378.6 242 78.9
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 6.3e-103 378.3 249 75.9
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.1e-102 377.5 247 76.5
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.8e-102 376.7 264 72.7
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.8e-102 376.7 245 76.7
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 1.8e-102 376.7 247 76.1
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 3.1e-102 375.9 247 75.7
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 4.1e-102 375.6 245 75.5
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.3e-102 375.2 245 75.5
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 9.1e-102 374.4 242 76.4
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.2e-101 374.0 245 75.5
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.2e-101 374.0 248 75.8
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 1.5e-101 373.6 244 76.2
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 7.7e-101 371.3 245 73.9
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.0e-100 370.9 264 70.1
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.3e-100 370.5 259 72.6
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.7e-100 370.2 263 71.9
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 2.2e-100 369.8 244 73.4
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.2e-100 369.8 253 74.3
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 3.8e-100 369.0 245 73.1
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.8e-100 369.0 242 76.4
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 8.5e-100 367.9 279 67.4
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 1.4e-99 367.1 242 75.6
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 2.5e-99 366.3 252 72.2
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 2.5e-99 366.3 249 73.1
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 4.2e-99 365.5 227 77.1
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 4.2e-99 365.5 246 74.4
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 7.2e-99 364.8 263 70.3
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 1.2e-98 364.0 252 71.4
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 2.7e-98 362.8 252 71.0
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 4.7e-98 362.1 247 73.3
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 6.1e-98 361.7 254 72.0
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.8e-97 360.1 240 75.0
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 1.8e-97 360.1 247 72.5
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.8e-97 360.1 270 69.3
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.3e-97 359.8 246 72.0
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 3.0e-97 359.4 258 70.2
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 3.9e-97 359.0 245 72.7
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 6.7e-97 358.2 247 74.1
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.1e-96 357.5 237 73.0
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 2.0e-96 356.7 245 72.2
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 5.7e-96 355.1 259 67.6
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 7.4e-96 354.8 237 74.7
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.3e-95 354.0 261 68.2
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 1.7e-95 353.6 237 74.3
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.7e-95 353.6 236 73.7
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.8e-95 352.8 232 74.6
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 3.7e-95 352.4 237 74.3
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 3.7e-95 352.4 268 70.1
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 4.8e-95 352.1 311 62.4
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.4e-94 350.5 241 71.4
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.4e-94 350.5 236 73.3
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 2.4e-94 349.7 243 72.4
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 6.9e-94 348.2 244 70.1
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.5e-93 347.1 224 74.6
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 3.4e-93 345.9 265 65.3
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 3.4e-93 345.9 244 67.2
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 5.9e-93 345.1 251 68.1
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 1.3e-92 344.0 245 69.8
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 2.2e-92 343.2 232 72.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 3.6e-90 335.9 267 65.2
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 3.0e-89 332.8 236 70.3
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 3.7e-87 325.9 244 70.1
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.1e-86 324.3 201 81.6
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.8e-86 323.6 229 70.3
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 4.1e-86 322.4 234 72.2
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.2e-85 320.9 212 75.0
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 4.5e-85 318.9 222 72.5
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 5.9e-85 318.5 251 64.1
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 9.4e-83 311.2 225 71.6
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.0e-81 307.8 267 61.4
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 2.4e-78 296.6 248 59.7
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 2.4e-78 296.6 212 69.3
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.6e-77 293.9 251 61.0
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 4.5e-77 292.4 268 55.6
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 4.2e-75 285.8 261 58.2
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 7.2e-75 285.0 206 68.9
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 4.0e-73 279.3 180 77.8
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 2.8e-71 273.1 255 56.5
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 5.5e-67 258.8 265 55.8
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 4.9e-63 245.7 140 80.0
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.1e-50 203.8 149 69.1
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 1.4e-46 191.0 223 47.1
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 4.1e-46 189.5 217 47.9
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.1e-38 164.9 214 42.5
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.8e-33 147.5 124 60.5
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 6.8e-33 145.6 88 78.4
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 2.2e-31 140.6 137 56.9
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 5.4e-22 109.4 82 63.4
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.6e-21 107.8 56 89.3
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 3.0e-20 103.6 66 74.2
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.5e-19 101.3 68 66.2
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 2.5e-19 100.5 111 51.4
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 2.4e-17 94.0 136 43.4
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 5.3e-17 92.8 58 74.1
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 7.6e-16 89.0 63 63.5
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.4e-14 84.0 64 62.5
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 9.3e-14 82.0 51 74.5
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 2.7e-13 80.5 50 76.0
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 4.6e-13 79.7 175 34.3
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 6.0e-13 79.3 49 75.5
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 7.9e-13 79.0 170 35.9
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.1e-11 75.1 92 54.3
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 1.5e-11 74.7 53 66.0
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 6.9e-09 65.9 43 67.4
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 1.5e-08 64.7 81 44.4


User provided reference genes

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