Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019443 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D109426 4.6e-35 150.6 72 100.0
CSS0041195 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D112383 4.6e-35 150.6 72 100.0
CSS0024334 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D110983 2.3e-34 148.3 72 98.6
CSS0040960 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D112135 2.3e-34 148.3 72 98.6
CSS0000173 Camellia sinensis var. sinensis HOM05D023575 ORTHO05D109196 1.3e-24 115.9 67 82.1
CSS0025970 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 6.5e-13 77.0 39 97.4
QL10p005473 Quercus lobata HOM05D000230 ORTHO05D000176 1.2e-11 72.8 39 89.7
TAR622G1283 Trochodendron aralioides HOM05D000230 ORTHO05D000176 1.6e-11 72.4 39 89.7
Manes.06G114500 Manihot esculenta HOM05D000230 ORTHO05D000176 2.7e-11 71.6 39 87.2
TWI09G0250 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 2.7e-11 71.6 39 84.6
SGA_v2.0_scaffold102G29867 Striga asiatica HOM05D000230 ORTHO05D000176 1.4e-10 69.3 39 87.2
TWI39G0021 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 1.4e-10 69.3 39 82.1
Actinidia16195 Actinidia chinensis HOM05D000230 ORTHO05D000176 1.8e-10 68.9 39 87.2
Migut.I00262 Erythranthe guttata HOM05D000230 ORTHO05D000176 1.8e-10 68.9 39 87.2
DCAR_016419 Daucus carota HOM05D000230 ORTHO05D000176 3.0e-10 68.2 39 84.6
TAR374G1342 Trochodendron aralioides HOM05D000230 ORTHO05D000176 3.0e-10 68.2 37 86.5
Aqoxy3G01312 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 3.9e-10 67.8 39 82.1
Nn4g22481 Nelumbo nucifera HOM05D000230 ORTHO05D000176 3.9e-10 67.8 39 82.1
MD06G1158200 Malus domestica HOM05D000230 ORTHO05D000176 5.1e-10 67.4 39 79.5
SalBow7G0261 Salvia bowleyana HOM05D000230 ORTHO05D000176 5.1e-10 67.4 39 84.6
Ciclev10018456m.g Citrus clementina HOM05D000230 ORTHO05D000176 6.7e-10 67.0 39 82.1
MD14G1164800 Malus domestica HOM05D000230 ORTHO05D000176 6.7e-10 67.0 39 79.5
Atru.chr9.999 Acer truncatum HOM05D000230 ORTHO05D000176 8.8e-10 66.6 39 82.1
FvH4_5g07240 Fragaria vesca HOM05D000230 ORTHO05D000176 8.8e-10 66.6 39 76.9
FAN04G3118 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.8e-10 66.6 39 76.9
FAN13G0007 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.8e-10 66.6 39 76.9
FAN18G1505 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.8e-10 66.6 39 76.9
Prupe.5G158100 Prunus persica HOM05D000230 ORTHO05D000176 1.1e-09 66.2 39 79.5
Potri.015G089300 Populus trichocarpa HOM05D000230 ORTHO05D000176 1.5e-09 65.9 39 82.1
ClCG06G017700 Citrullus lanatus HOM05D000230 ORTHO05D000176 2.0e-09 65.5 38 78.9
MELO3C026219.2 Cucumis melo HOM05D000230 ORTHO05D000176 2.0e-09 65.5 38 78.9
CsaV3_1G000760 Cucumis sativus L. HOM05D000230 ORTHO05D000176 2.0e-09 65.5 38 78.9
Dinv11114 Davidia involucrata HOM05D000230 ORTHO05D000176 2.0e-09 65.5 36 86.1
vmacro19252 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 2.0e-09 65.5 39 82.1
FAN08G3494 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.5e-09 65.1 39 76.9
Cc04_g10540 Coffea canephora HOM05D000230 ORTHO05D000176 3.3e-09 64.7 39 82.1
CiPaw.12G034900 Carya illinoinensis HOM05D000230 ORTHO05D000176 4.3e-09 64.3 39 76.9
Hma1.2p1_0014F.1_g010070 Hydrangea macrophylla HOM05D000230 ORTHO05D000176 4.3e-09 64.3 39 84.6
Sed0027476 Sechium edule HOM05D000230 ORTHO05D000176 4.3e-09 64.3 38 78.9
MBI04_g22931_MAGBIO Magnolia biondii HOM05D000230 ORTHO05D000176 7.4e-09 63.5 43 72.1
EL10Ac7g18059 Beta vulgaris HOM05D000230 ORTHO05D000176 9.7e-09 63.2 39 74.4
Rhsim08G0183600 Rhododendron simsii HOM05D000230 ORTHO05D000176 9.7e-09 63.2 39 76.9
PSO729G0270 Papaver somniferum HOM05D000230 ORTHO05D000176 1.3e-08 62.8 39 76.9
Peaxi162Scf00089g00840 Petunia axillaris HOM05D000230 ORTHO05D000176 1.3e-08 62.8 39 76.9
CAN.G472.42 Capsicum annuum HOM05D000230 ORTHO05D000176 1.7e-08 62.4 39 79.5
Nitab4.5_0001360g0050 Nicotiana tabacum HOM05D000230 ORTHO05D000176 1.7e-08 62.4 39 79.5
Nitab4.5_0002531g0060 Nicotiana tabacum HOM05D000230 ORTHO05D000176 1.7e-08 62.4 39 79.5
PGR083G1307 Punica granatum HOM05D000230 ORTHO05D000176 1.7e-08 62.4 39 76.9
PGSC0003DMG400015233 Solanum tuberosum HOM05D000230 ORTHO05D000176 1.7e-08 62.4 39 79.5
Ah.15g095390 Amaranthus hybridus HOM05D000230 ORTHO05D000176 2.2e-08 62.0 39 71.8
ECA232G0347 Erigeron canadensis HOM05D000230 ORTHO05D000176 2.2e-08 62.0 39 74.4
PSO017G0382 Papaver somniferum HOM05D000230 ORTHO05D000176 2.8e-08 61.6 39 74.4
Solyc03g111570.4 Solanum lycopersicum HOM05D000230 ORTHO05D000176 2.8e-08 61.6 39 79.5
Sopen03g030690 Solanum pennellii HOM05D000230 ORTHO05D000176 2.8e-08 61.6 39 79.5
SHI17249 Sapria himalayana HOM05D000230 ORTHO05D000176 4.8e-08 60.8 39 74.4
GSVIVG01007560001 Vitis vinifera HOM05D000230 ORTHO05D000176 6.3e-08 60.5 39 71.8
RcHm_v2.0_Chr7g0191411 Rosa chinensis HOM05D000230 ORTHO05D000176 8.2e-08 60.1 39 71.8
CANSAT80G0238 Cannabis sativa HOM05D000230 ORTHO05D000176 1.1e-07 59.7 39 79.5
Cpa.g.sc4.57 Carica papaya HOM05D000230 ORTHO05D000176 1.1e-07 59.7 55 60.0
Eucgr.B00160 Eucalyptus grandis HOM05D000230 ORTHO05D000176 1.1e-07 59.7 40 80.0
Sed0009436 Sechium edule HOM05D000230 ORTHO05D000176 1.1e-07 59.7 38 73.7
Sc04g0001030 Simmondsia chinensis HOM05D000230 ORTHO05D000176 1.1e-07 59.7 39 71.8
Lsat_1_v5_gn_4_79080 Lactuca sativa HOM05D000230 ORTHO05D000176 1.8e-07 58.9 39 71.8
HanXRQChr09g0272811 Helianthus annuus HOM05D000230 ORTHO05D000176 2.4e-07 58.5 39 69.2
unitig_26.g9677 Utricularia gibba HOM05D000230 ORTHO05D000176 3.1e-07 58.2 39 69.2
CDE06G1217 Ceratophyllum demersum HOM05D000230 ORTHO05D000176 4.1e-07 57.8 39 71.8
PSO478G2681 Papaver somniferum HOM05D000230 ORTHO05D000176 5.3e-07 57.4 39 69.2
Cfa018899 Carpinus fangiana HOM05D000230 ORTHO05D000176 6.9e-07 57.0 39 76.9
Haze_07284 Corylus avellana HOM05D000230 ORTHO05D000176 6.9e-07 57.0 43 67.4
CANSAT25G1799 Cannabis sativa HOM05D000230 ORTHO05D000176 9.1e-07 56.6 39 76.9
THA.LOC104818199 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 9.1e-07 56.6 39 74.4
Sabra15G0111900 Salix brachista HOM05D000230 ORTHO05D000176 2.0e-06 55.5 37 75.7
HPP92_025452 Vanilla planifolia HOM05D000230 ORTHO05D000176 2.0e-06 55.5 39 71.8
Hund05624 Selenicereus undatus HOM05D000230 ORTHO05D000176 2.6e-06 55.1 39 69.2
AL4G33060 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 3.4e-06 54.7 41 68.3
Thhalv10016126m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 4.5e-06 54.3 39 76.9
Glyma.06G173500 Glycine max HOM05D000230 ORTHO05D000176 5.9e-06 53.9 39 71.8
AT2G36850 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 7.7e-06 53.5 41 68.3
CDE03G0271 Ceratophyllum demersum HOM05D000230 ORTHO05D000176 7.7e-06 53.5 39 66.7


User provided reference genes

Program Settings