Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 4.7e-140 501.1 242 100.0
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.5e-133 479.6 247 95.1
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 6.8e-123 444.1 241 91.3
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 2.2e-113 412.5 241 83.0
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 1.3e-110 403.3 241 79.3
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 1.9e-109 399.4 241 80.9
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 8.6e-102 374.0 241 76.3
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.9e-101 372.9 241 73.0
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 8.1e-100 367.5 256 69.1
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 1.1e-99 367.1 240 73.3
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.1e-99 367.1 241 72.2
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.8e-99 366.3 242 73.6
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 2.3e-99 365.9 241 73.4
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 6.8e-99 364.4 241 70.5
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 2.6e-98 362.5 241 73.0
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 5.8e-98 361.3 241 70.5
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 2.2e-97 359.4 241 72.2
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 2.9e-97 359.0 241 71.0
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 6.4e-97 357.8 241 70.5
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 6.4e-97 357.8 241 70.5
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 2.4e-96 355.9 241 70.1
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 2.4e-96 355.9 241 71.8
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 5.4e-96 354.8 241 69.7
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 1.6e-95 353.2 241 68.9
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 1.6e-95 353.2 241 70.5
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.0e-94 350.5 240 69.6
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.0e-94 350.5 240 70.0
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 1.3e-94 350.1 240 69.6
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 3.0e-94 349.0 241 67.2
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.0e-94 349.0 241 70.1
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 3.9e-94 348.6 241 70.5
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 6.6e-94 347.8 241 70.1
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 1.5e-93 346.7 241 69.7
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.5e-93 346.7 241 69.3
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.5e-93 346.7 241 69.3
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.5e-93 346.7 240 69.2
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 3.3e-93 345.5 241 68.9
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 4.3e-93 345.1 241 67.2
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 7.3e-93 344.4 262 63.0
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 9.6e-93 344.0 240 69.2
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.2e-92 343.6 241 68.5
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.6e-92 343.2 241 69.7
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.6e-92 343.2 240 68.3
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 4.7e-92 341.7 241 68.9
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 4.7e-92 341.7 242 69.0
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 6.2e-92 341.3 240 66.7
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 2.4e-91 339.3 242 67.4
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 6.8e-91 337.8 241 69.7
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 1.2e-90 337.0 241 66.4
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 2.0e-90 336.3 241 67.2
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 2.0e-90 336.3 244 66.8
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 2.0e-90 336.3 241 67.2
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 5.8e-90 334.7 241 66.0
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.7e-89 333.2 243 66.3
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 3.8e-89 332.0 241 66.4
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.4e-88 330.1 241 67.2
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.4e-88 330.1 240 64.6
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.4e-88 330.1 240 64.6
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.6e-87 326.6 241 66.4
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 3.5e-87 325.5 241 64.3
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 4.6e-87 325.1 244 63.9
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 4.6e-87 325.1 244 63.9
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 6.0e-87 324.7 242 65.7
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.7e-86 323.2 244 63.9
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 1.7e-86 323.2 240 64.2
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 3.0e-86 322.4 238 64.7
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 5.1e-86 321.6 241 66.0
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 1.5e-85 320.1 241 66.0
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 1.1e-83 313.9 242 63.6
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 3.1e-83 312.4 248 60.9
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.2e-82 310.5 242 63.2
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 2.6e-82 309.3 246 61.8
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 9.9e-82 307.4 241 61.0
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 2.2e-81 306.2 241 61.8
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 3.8e-81 305.4 241 63.5
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 6.4e-81 304.7 242 62.0
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 8.4e-81 304.3 241 61.8
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.4e-80 302.8 241 61.8
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 2.4e-80 302.8 241 63.5
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 3.2e-80 302.4 241 62.2
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 5.4e-80 301.6 241 61.4
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 9.3e-80 300.8 241 61.8
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 9.3e-80 300.8 241 61.4
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 3.5e-79 298.9 241 61.0
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 7.9e-79 297.7 241 61.4
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.3e-78 297.0 238 61.8
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 1.7e-78 296.6 242 61.2
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 2.3e-78 296.2 259 57.5
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 3.0e-78 295.8 242 61.2
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 3.9e-78 295.4 242 61.6
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 6.6e-78 294.7 241 61.0
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 1.5e-77 293.5 241 61.8
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 1.5e-77 293.5 241 61.8
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.8e-75 286.6 208 65.9
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 2.4e-75 286.2 237 59.9
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 6.9e-75 284.6 235 61.3
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 7.1e-72 274.6 191 69.1
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 8.2e-60 234.6 242 52.1
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 6.9e-59 231.5 201 59.2
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 6.9e-59 231.5 198 60.1
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 5.0e-57 225.3 194 58.2
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.1e-56 224.2 139 74.1
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 4.2e-56 222.2 234 47.9
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.6e-55 220.3 241 45.2
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 6.7e-54 214.9 235 50.2
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.6e-52 210.3 234 44.4
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 8.2e-52 208.0 139 69.1
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 5.3e-51 205.3 191 57.1
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.4e-48 197.2 141 64.5
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.0e-46 191.0 249 41.8
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.2e-39 167.5 138 58.7
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-35 153.7 99 69.7
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 8.5e-33 144.8 95 70.5
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.2e-31 141.0 95 70.5
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 2.0e-29 133.7 280 32.1
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 1.4e-27 127.5 95 64.2
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 2.7e-26 123.2 95 63.2
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 3.6e-23 112.8 194 36.6
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 4.7e-23 112.5 71 73.2
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 1.0e-22 111.3 107 52.3
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 3.4e-21 106.3 94 55.3
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 7.5e-21 105.1 91 52.7
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.2e-18 97.8 242 28.5
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 2.0e-18 97.1 229 29.3
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 8.5e-17 91.7 220 28.2
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.5e-16 90.1 68 61.8
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 4.7e-15 85.9 222 28.8
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 2.3e-14 83.6 224 26.8
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.0e-14 83.2 218 26.6
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 2.1e-07 60.5 41 73.2


User provided reference genes

Program Settings