Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 5.1e-47 190.7 91 100.0
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 1.8e-36 155.6 80 87.5
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 6.9e-36 153.7 76 93.4
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 5.8e-35 150.6 80 86.2
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 7.6e-35 150.2 82 85.4
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.7e-34 149.1 75 92.0
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 2.9e-34 148.3 75 90.7
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 3.8e-34 147.9 76 90.8
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 4.9e-34 147.5 80 85.0
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 4.9e-34 147.5 75 92.0
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 8.4e-34 146.7 81 82.7
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 1.9e-33 145.6 75 90.7
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 2.4e-33 145.2 75 89.3
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 2.4e-33 145.2 75 92.0
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.2e-33 144.8 75 89.3
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 3.2e-33 144.8 75 89.3
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 4.2e-33 144.4 78 84.6
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 4.2e-33 144.4 80 83.8
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 5.5e-33 144.1 80 83.8
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 5.5e-33 144.1 75 89.3
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.1e-33 143.7 80 85.0
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.1e-33 143.7 80 85.0
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 7.1e-33 143.7 75 89.3
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 7.1e-33 143.7 75 90.7
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.3e-33 143.3 80 83.8
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 9.3e-33 143.3 75 86.7
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.2e-32 142.9 75 86.7
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.2e-32 142.9 75 86.7
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.2e-32 142.9 75 88.0
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 1.2e-32 142.9 76 88.2
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 1.6e-32 142.5 76 86.8
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.6e-32 142.5 75 85.3
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 1.6e-32 142.5 75 86.7
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 2.1e-32 142.1 82 80.5
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 2.1e-32 142.1 75 88.0
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.1e-32 142.1 80 83.8
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 2.1e-32 142.1 75 86.7
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.1e-32 142.1 75 85.3
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 2.1e-32 142.1 75 88.0
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 2.1e-32 142.1 75 86.7
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 2.7e-32 141.7 82 82.9
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.7e-32 141.7 80 83.8
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 2.7e-32 141.7 75 86.7
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 3.5e-32 141.4 75 88.0
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 3.5e-32 141.4 75 85.3
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 3.5e-32 141.4 75 85.3
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 4.6e-32 141.0 74 89.2
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 4.6e-32 141.0 75 86.7
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 4.6e-32 141.0 75 86.7
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 4.6e-32 141.0 75 88.0
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 6.0e-32 140.6 75 82.7
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 6.0e-32 140.6 75 82.7
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 6.0e-32 140.6 75 82.7
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 7.9e-32 140.2 75 85.3
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 7.9e-32 140.2 75 85.3
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 7.9e-32 140.2 75 86.7
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.0e-31 139.8 75 85.3
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.0e-31 139.8 75 85.3
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.3e-31 139.4 82 81.7
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 2.3e-31 138.7 75 84.0
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.3e-31 138.7 75 82.7
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 3.0e-31 138.3 75 82.7
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 3.0e-31 138.3 80 78.8
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 3.9e-31 137.9 76 82.9
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 3.9e-31 137.9 75 82.7
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 3.9e-31 137.9 80 78.8
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 5.1e-31 137.5 76 82.9
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 5.1e-31 137.5 75 82.7
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 5.1e-31 137.5 76 80.3
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 8.7e-31 136.7 80 81.2
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 1.1e-30 136.3 75 81.3
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.5e-30 136.0 75 81.3
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.9e-30 135.6 75 81.3
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 1.9e-30 135.6 75 81.3
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 3.3e-30 134.8 75 82.7
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 3.3e-30 134.8 77 79.2
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 5.6e-30 134.0 75 81.3
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 5.6e-30 134.0 75 81.3
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 5.6e-30 134.0 75 81.3
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 7.4e-30 133.7 75 80.0
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 7.4e-30 133.7 75 78.7
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 9.6e-30 133.3 75 80.0
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.6e-30 133.3 80 81.2
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 9.6e-30 133.3 80 81.2
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 9.6e-30 133.3 75 80.0
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 1.3e-29 132.9 75 80.0
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.3e-29 132.9 89 71.9
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 2.8e-29 131.7 75 81.3
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 2.8e-29 131.7 75 78.7
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 3.7e-29 131.3 75 78.7
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 3.7e-29 131.3 75 78.7
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 3.7e-29 131.3 75 78.7
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 4.8e-29 131.0 75 78.7
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 6.2e-29 130.6 75 78.7
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 5.3e-28 127.5 75 74.7
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 2.0e-27 125.6 92 66.3
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.5e-27 124.4 80 77.5
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 1.3e-26 122.9 110 56.4
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 8.4e-26 120.2 64 87.5
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.9e-25 119.0 58 89.7
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.1e-25 117.1 69 81.2
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 1.2e-24 116.3 65 81.5
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 2.1e-24 115.5 64 85.9
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 3.5e-24 114.8 66 81.8
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 4.6e-24 114.4 61 86.9
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 7.9e-24 113.6 69 78.3
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.3e-23 112.8 66 80.3
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.9e-23 111.3 71 78.9
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 5.1e-23 110.9 71 77.5
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 5.1e-23 110.9 61 83.6
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 6.7e-23 110.5 69 75.4
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 8.7e-23 110.2 74 67.6
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 8.7e-23 110.2 64 76.6
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.5e-22 109.4 61 83.6
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 1.3e-21 106.3 50 86.0
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 3.7e-21 104.8 68 72.1
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 4.8e-21 104.4 66 74.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.4e-20 102.8 51 84.3
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 1.5e-19 99.4 75 58.7
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 1.5e-19 99.4 66 74.2
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 2.6e-19 98.6 64 73.4
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 3.4e-19 98.2 66 74.2
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 7.6e-19 97.1 52 80.8
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 7.6e-19 97.1 52 80.8
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 1.4e-17 92.8 49 77.6
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 1.4e-17 92.8 49 77.6
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 2.7e-16 88.6 77 54.5
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 2.7e-16 88.6 50 82.0
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 4.6e-16 87.8 66 63.6
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.1e-12 76.6 35 88.6
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 6.9e-12 73.9 68 55.9
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 4.5e-11 71.2 38 76.3
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 2.9e-10 68.6 37 70.3
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 3.2e-09 65.1 71 39.4
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 7.2e-09 63.9 37 86.5
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.4e-07 59.7 39 59.0
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 1.5e-06 56.2 37 64.9


User provided reference genes

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