Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041138 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 4.4e-127 458.0 235 100.0
RcHm_v2.0_Chr6g0290091 Rosa chinensis HOM05D000097 ORTHO05D000041 1.4e-19 100.9 258 28.3
RcHm_v2.0_Chr6g0290111 Rosa chinensis HOM05D000097 ORTHO05D000041 2.3e-19 100.1 258 28.3
Duzib268G1646 Durio zibethinus HOM05D000097 ORTHO05D000041 3.0e-19 99.8 247 32.4
Prupe.8G235400 Prunus persica HOM05D000097 ORTHO05D000041 4.0e-19 99.4 265 27.5
Prupe.8G235300 Prunus persica HOM05D000097 ORTHO05D000041 5.2e-19 99.0 247 30.4
GSVIVG01001212001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.0e-18 97.1 251 27.1
Haze_04651 Corylus avellana HOM05D000097 ORTHO05D000041 2.6e-18 96.7 260 28.8
Hma1.2p1_0172F.1_g075950 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 3.4e-18 96.3 249 30.5
PGR119G1681 Punica granatum HOM05D000097 ORTHO05D000041 5.7e-18 95.5 255 30.2
GSVIVG01001209001 Vitis vinifera HOM05D000097 ORTHO05D000041 9.8e-18 94.7 251 27.1
RcHm_v2.0_Chr6g0290151 Rosa chinensis HOM05D000097 ORTHO05D000041 1.3e-17 94.4 258 27.9
Prupe.1G007500 Prunus persica HOM05D000097 ORTHO05D000041 1.7e-17 94.0 252 29.4
arahy.Tifrunner.gnm1.ann1.H5F011 Arachis hypogaea HOM05D000097 ORTHO05D000041 2.2e-17 93.6 218 31.7
Haze_04656 Corylus avellana HOM05D000097 ORTHO05D000041 2.2e-17 93.6 251 27.9
QL12p042001 Quercus lobata HOM05D000097 ORTHO05D000041 2.2e-17 93.6 252 29.4
CANSAT25G2251 Cannabis sativa HOM05D000097 ORTHO05D000041 3.7e-17 92.8 218 30.7
Cfa006188 Carpinus fangiana HOM05D000097 ORTHO05D000041 3.7e-17 92.8 259 29.0
Cfa006187 Carpinus fangiana HOM05D000097 ORTHO05D000041 6.4e-17 92.0 259 30.1
Ciclev10013976m.g Citrus clementina HOM05D000097 ORTHO05D000041 6.4e-17 92.0 254 29.1
TAR362G0086 Trochodendron aralioides HOM05D000097 ORTHO05D000041 6.4e-17 92.0 253 28.9
GSVIVG01001208001 Vitis vinifera HOM05D000097 ORTHO05D000041 8.3e-17 91.7 252 29.4
FAN15G1804 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.4e-16 90.9 257 28.0
FAN15G2938 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.4e-16 90.9 257 28.0
Ciclev10019036m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.8e-16 90.5 233 30.0
arahy.Tifrunner.gnm1.ann1.6ST5A0 Arachis hypogaea HOM05D000097 ORTHO05D000041 3.2e-16 89.7 229 33.6
FAN24G3408 Fragaria x ananassa HOM05D000097 ORTHO05D000041 5.4e-16 89.0 260 28.1
COL.COLO4_09198 Corchorus olitorius HOM05D000097 ORTHO05D000041 9.2e-16 88.2 255 28.6
FvH4_2g23030 Fragaria vesca HOM05D000097 ORTHO05D000041 1.2e-15 87.8 260 28.1
Dinv38234 Davidia involucrata HOM05D000097 ORTHO05D000041 1.6e-15 87.4 268 28.4
Lj1C52T4 Lonicera japonica HOM05D000097 ORTHO05D000041 1.6e-15 87.4 250 28.0
TAR633G0183 Trochodendron aralioides HOM05D000097 ORTHO05D000041 2.0e-15 87.0 254 29.9
TAR633G2122 Trochodendron aralioides HOM05D000097 ORTHO05D000041 2.7e-15 86.7 254 30.7
CiPaw.15G182200 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.6e-15 85.9 277 27.8
Migut.N02030 Erythranthe guttata HOM05D000097 ORTHO05D000041 5.9e-15 85.5 253 26.5
CiPaw.15G182000 Carya illinoinensis HOM05D000097 ORTHO05D000041 7.8e-15 85.1 278 28.8
PGR119G1822 Punica granatum HOM05D000097 ORTHO05D000041 7.8e-15 85.1 255 28.6
Ciclev10006513m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.3e-14 84.3 249 27.7
FAN15G0124 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.3e-14 84.3 256 28.1
Lj1C52T3 Lonicera japonica HOM05D000097 ORTHO05D000041 1.7e-14 84.0 259 27.4
Phvul.003G099900 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 3.0e-14 83.2 257 28.4
Dinv27239 Davidia involucrata HOM05D000097 ORTHO05D000041 3.9e-14 82.8 261 28.0
Dinv29595 Davidia involucrata HOM05D000097 ORTHO05D000041 3.9e-14 82.8 261 28.0
Potri.002G048832 Populus trichocarpa HOM05D000097 ORTHO05D000041 3.9e-14 82.8 248 27.4
VMungo1215G3377 Vigna mungo HOM05D000097 ORTHO05D000041 3.9e-14 82.8 257 28.4
Lj1C54T4 Lonicera japonica HOM05D000097 ORTHO05D000041 5.0e-14 82.4 250 28.0
Cfa021393 Carpinus fangiana HOM05D000097 ORTHO05D000041 6.6e-14 82.0 166 32.5
CsaV3_6G036770 Cucumis sativus L. HOM05D000097 ORTHO05D000041 6.6e-14 82.0 251 27.9
FAN18G0568 Fragaria x ananassa HOM05D001347 ORTHO05D000041 6.6e-14 82.0 196 30.1
MD03G1258700 Malus domestica HOM05D000097 ORTHO05D000041 1.1e-13 81.3 229 31.4
Lj1A53G40 Lonicera japonica HOM05D000097 ORTHO05D000041 1.5e-13 80.9 242 28.9
TAR633G0997 Trochodendron aralioides HOM05D000097 ORTHO05D000041 1.5e-13 80.9 255 30.6
GSVIVG01003111001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.5e-13 80.9 257 27.2
FAN27G0465 Fragaria x ananassa HOM05D000097 ORTHO05D000041 2.5e-13 80.1 259 26.6
GSVIVG01019157001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.3e-13 79.7 258 27.1
Atru.chr4.1703 Acer truncatum HOM05D000097 ORTHO05D000041 4.3e-13 79.3 254 28.0
Glyma.13G224800 Glycine max HOM05D000097 ORTHO05D000041 4.3e-13 79.3 203 29.1
Glyma.15G087500 Glycine max HOM05D000097 ORTHO05D000041 4.3e-13 79.3 213 32.4
Oeu023628.1 Olea europaea HOM05D000097 ORTHO05D000041 4.3e-13 79.3 254 28.0
CiPaw.07G087700 Carya illinoinensis HOM05D000097 ORTHO05D000041 7.3e-13 78.6 265 25.3
CiPaw.07G087500 Carya illinoinensis HOM05D000097 ORTHO05D000041 9.5e-13 78.2 256 26.2
MELO3C014331.2 Cucumis melo HOM05D000097 ORTHO05D000041 9.5e-13 78.2 255 29.0
MD11G1279300 Malus domestica HOM05D000097 ORTHO05D000041 9.5e-13 78.2 255 25.9
Medtr2g020510 Medicago truncatula HOM05D000097 ORTHO05D000041 9.5e-13 78.2 300 26.0
PSO832G1868 Papaver somniferum HOM05D000097 ORTHO05D000041 9.5e-13 78.2 255 27.1
TAR362G0550 Trochodendron aralioides HOM05D000097 ORTHO05D000041 1.2e-12 77.8 267 28.5
CiPaw.16G117600 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.6e-12 77.4 281 28.1
FAN20G0601 Fragaria x ananassa HOM05D000097 ORTHO05D000041 2.1e-12 77.0 259 26.6
Sabra02G0039800 Salix brachista HOM05D000097 ORTHO05D000041 2.1e-12 77.0 248 25.4
SalBow6G2878 Salvia bowleyana HOM05D000097 ORTHO05D000041 3.6e-12 76.3 221 29.0
SalBow6G5415 Salvia bowleyana HOM05D000097 ORTHO05D000041 3.6e-12 76.3 221 29.0
CiPaw.15G182300 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.7e-12 75.9 269 27.5
TWI12G0958 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 4.7e-12 75.9 255 27.8
arahy.Tifrunner.gnm1.ann1.KVPH3I Arachis hypogaea HOM05D000097 ORTHO05D000041 8.0e-12 75.1 227 30.8
Medtr2g020450 Medicago truncatula HOM05D000097 ORTHO05D000041 1.0e-11 74.7 254 29.5
VMungo0540G0336 Vigna mungo HOM05D000097 ORTHO05D000041 1.0e-11 74.7 264 27.3
VMungo0540G0734 Vigna mungo HOM05D000097 ORTHO05D000041 1.0e-11 74.7 231 32.0
VMungo0540G1282 Vigna mungo HOM05D000097 ORTHO05D000041 1.0e-11 74.7 231 31.2
Actinidia19957 Actinidia chinensis HOM05D000097 ORTHO05D000041 1.4e-11 74.3 154 35.7
TAR362G0859 Trochodendron aralioides HOM05D000097 ORTHO05D000041 1.4e-11 74.3 258 24.8
MD13G1283400 Malus domestica HOM05D000097 ORTHO05D000041 2.3e-11 73.6 250 29.6
Thecc.01G272600 Theobroma cacao HOM05D000097 ORTHO05D000041 2.3e-11 73.6 258 26.7
Gorai.011G158100 Gossypium raimondii HOM05D000097 ORTHO05D000041 4.0e-11 72.8 251 29.1
CiPaw.16G117900 Carya illinoinensis HOM05D000097 ORTHO05D000041 5.2e-11 72.4 220 30.0
ClCG07G000470 Citrullus lanatus HOM05D000097 ORTHO05D000041 8.9e-11 71.6 247 25.9
PSO210G6515 Papaver somniferum HOM05D000097 ORTHO05D000041 8.9e-11 71.6 253 26.5
Phvul.006G170700 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 8.9e-11 71.6 231 29.4
Gohir.A10G124500 Gossypium hirsutum HOM05D000097 ORTHO05D000041 1.2e-10 71.2 229 30.6
GSVIVG01017534001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.2e-10 71.2 258 24.0
GSVIVG01003105001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.5e-10 70.9 172 29.7
CiPaw.08G151500 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.0e-10 70.5 254 26.0
Haze_01933 Corylus avellana HOM05D000097 ORTHO05D000041 2.0e-10 70.5 247 27.9
GSVIVG01017541001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.0e-10 70.5 253 23.3
Lalb_Chr20g0118221 Lupinus albus HOM05D000097 ORTHO05D000041 3.4e-10 69.7 254 27.2
QL12p041667 Quercus lobata HOM05D000097 ORTHO05D000041 3.4e-10 69.7 250 26.8
GSVIVG01017530001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.4e-10 69.7 258 23.6
Lj1C54T1 Lonicera japonica HOM05D000097 ORTHO05D000041 4.4e-10 69.3 157 31.2
MBI04_g27907_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 5.8e-10 68.9 252 25.0
Hma1.2p1_0172F.1_g075910 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 7.5e-10 68.6 158 32.9
Hma1.2p1_0172F.1_g075930 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 7.5e-10 68.6 165 32.1
Thecc.04G204300 Theobroma cacao HOM05D000097 ORTHO05D000041 7.5e-10 68.6 226 27.9
Duzib212G0087 Durio zibethinus HOM05D000097 ORTHO05D000041 9.8e-10 68.2 230 28.3
Lj1C53G9 Lonicera japonica HOM05D000097 ORTHO05D000041 9.8e-10 68.2 148 32.4
TPR.G1508 Trifolium pratense HOM05D000097 ORTHO05D000041 9.8e-10 68.2 224 30.4
MBI04_g26254_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000041 1.7e-09 67.4 248 24.2
Psat1g186680 Pisum sativum HOM05D000097 ORTHO05D000041 1.7e-09 67.4 224 29.9
Gorai.004G077300 Gossypium raimondii HOM05D000097 ORTHO05D000041 2.9e-09 66.6 152 34.2
Lj1A53G41 Lonicera japonica HOM05D000097 ORTHO05D000041 2.9e-09 66.6 157 31.8
Medtr2g020470 Medicago truncatula HOM05D000097 ORTHO05D000041 2.9e-09 66.6 268 26.9
Actinidia00777 Actinidia chinensis HOM05D000097 ORTHO05D000041 3.7e-09 66.2 227 27.3
Gohir.D10G141800 Gossypium hirsutum HOM05D000097 ORTHO05D000041 3.7e-09 66.2 242 28.9
arahy.Tifrunner.gnm1.ann1.1CD59K Arachis hypogaea HOM05D000097 ORTHO05D000041 4.9e-09 65.9 257 26.5
Cfa006191 Carpinus fangiana HOM05D000097 ORTHO05D000041 4.9e-09 65.9 227 30.0
Glyma.07G252400 Glycine max HOM05D000097 ORTHO05D000041 4.9e-09 65.9 246 25.6
Lj6g0020587 Lotus japonicus HOM05D000097 ORTHO05D000041 6.4e-09 65.5 229 27.9
Phvul.008G214000 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 6.4e-09 65.5 261 24.1
Glyma.08G314100 Glycine max HOM05D000097 ORTHO05D000041 8.3e-09 65.1 228 28.9
Prupe.1G007700 Prunus persica HOM05D000097 ORTHO05D000041 8.3e-09 65.1 222 27.9
FAN08G0793 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.1e-08 64.7 242 24.0
Cfa006193 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.4e-08 64.3 160 30.6
MBI15_g10089_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 1.4e-08 64.3 215 25.6
RcHm_v2.0_Chr4g0414131 Rosa chinensis HOM05D000097 ORTHO05D000041 1.4e-08 64.3 251 26.3
arahy.Tifrunner.gnm1.ann1.BJSC2Z Arachis hypogaea HOM05D000097 ORTHO05D000041 1.9e-08 63.9 255 26.7
Duzib138G0530 Durio zibethinus HOM05D000097 ORTHO05D000041 1.9e-08 63.9 243 25.1
Cc03_g07820 Coffea canephora HOM05D000097 ORTHO05D000041 2.4e-08 63.5 252 25.8
arahy.Tifrunner.gnm1.ann1.22V61H Arachis hypogaea HOM05D000097 ORTHO05D000041 3.2e-08 63.2 260 23.5
Potri.002G048666 Populus trichocarpa HOM05D000097 ORTHO05D000041 3.2e-08 63.2 246 28.9
CiPaw.08G151200 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.1e-08 62.8 256 26.2
Lj4g0005456 Lotus japonicus HOM05D000097 ORTHO05D000041 4.1e-08 62.8 229 26.6
Prupe.1G160000 Prunus persica HOM05D000097 ORTHO05D000041 4.1e-08 62.8 229 27.5
Psat5g168640 Pisum sativum HOM05D000097 ORTHO05D000041 5.4e-08 62.4 255 25.1
Ciclev10006510m.g Citrus clementina HOM05D000097 ORTHO05D000041 9.2e-08 61.6 204 26.5
Haze_21928 Corylus avellana HOM05D000097 ORTHO05D000041 1.2e-07 61.2 66 45.5
Medtr3g051060 Medicago truncatula HOM05D000097 ORTHO05D000041 1.6e-07 60.8 263 24.0
Sed0006859 Sechium edule HOM05D000097 ORTHO05D000041 1.6e-07 60.8 228 29.8
CANSAT78G0219 Cannabis sativa HOM05D000097 ORTHO05D000041 2.0e-07 60.5 67 46.3
Sed0024865 Sechium edule HOM05D000097 ORTHO05D000041 2.0e-07 60.5 229 28.8
arahy.Tifrunner.gnm1.ann1.ZB7AQI Arachis hypogaea HOM05D000097 ORTHO05D000041 2.7e-07 60.1 258 22.9
CiPaw.07G085900 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.7e-07 60.1 232 28.9
MBI04_g26286_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 2.7e-07 60.1 177 25.4
Phvul.006G040344 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 2.7e-07 60.1 244 26.2
Cfa006192 Carpinus fangiana HOM05D000097 ORTHO05D000041 3.5e-07 59.7 60 46.7
GSVIVG01019314001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.5e-07 59.7 251 25.1
arahy.Tifrunner.gnm1.ann1.FM96X3 Arachis hypogaea HOM05D000097 ORTHO05D000041 4.6e-07 59.3 258 22.9
Gohir.D08G072900 Gossypium hirsutum HOM05D000097 ORTHO05D000041 4.6e-07 59.3 219 29.7
Phvul.008G214100 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 4.6e-07 59.3 249 24.5
QL12p042017 Quercus lobata HOM05D000097 ORTHO05D000041 6.0e-07 58.9 60 51.7
Sed0025781 Sechium edule HOM05D000097 ORTHO05D000041 6.0e-07 58.9 230 28.3
Atru.chr5.1508 Acer truncatum HOM05D000097 ORTHO05D000041 7.8e-07 58.5 57 49.1
FAN22G2417 Fragaria x ananassa HOM05D000097 ORTHO05D000041 7.8e-07 58.5 213 25.8
Manes.03G147700 Manihot esculenta HOM05D000097 ORTHO05D000041 7.8e-07 58.5 254 23.6
QL12p041840 Quercus lobata HOM05D000097 ORTHO05D000041 1.3e-06 57.8 243 22.2
Ciclev10004436m.g Citrus clementina HOM05D000097 ORTHO05D000041 2.3e-06 57.0 211 26.5
RcHm_v2.0_Chr4g0413451 Rosa chinensis HOM05D000097 ORTHO05D000041 2.3e-06 57.0 232 24.6
arahy.Tifrunner.gnm1.ann1.0WQ0Q9 Arachis hypogaea HOM05D000097 ORTHO05D000041 3.0e-06 56.6 233 25.8
arahy.Tifrunner.gnm1.ann1.IWNS16 Arachis hypogaea HOM05D000097 ORTHO05D000041 3.0e-06 56.6 232 25.9
arahy.Tifrunner.gnm1.ann1.R2WDYV Arachis hypogaea HOM05D000097 ORTHO05D000041 3.0e-06 56.6 262 22.1
Phvul.006G039900 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 3.0e-06 56.6 247 25.1
GSVIVG01001211001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.0e-06 56.6 140 32.9
Cc00_g33890 Coffea canephora HOM05D000097 ORTHO05D000041 3.9e-06 56.2 257 26.5
MBI04_g26262_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 3.9e-06 56.2 165 27.9
QL12p041961 Quercus lobata HOM05D000097 ORTHO05D000041 3.9e-06 56.2 257 23.7
FAN09G3825 Fragaria x ananassa HOM05D000097 ORTHO05D011996 5.0e-06 55.8 154 27.9
Phvul.006G160200 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 5.0e-06 55.8 140 29.3
CiPaw.07G087300 Carya illinoinensis HOM05D000097 ORTHO05D000041 6.6e-06 55.5 59 42.4
Phvul.006G041600 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 6.6e-06 55.5 252 26.2
Oeu034559.1 Olea europaea HOM05D000097 ORTHO05D000041 8.6e-06 55.1 164 30.5
QL04p005933 Quercus lobata HOM05D000097 ORTHO05D000041 8.6e-06 55.1 69 44.9
Sabra02G0039700 Salix brachista HOM05D000097 ORTHO05D000041 8.6e-06 55.1 56 50.0


User provided reference genes

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