Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041121 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 2.1e-203 712.6 507 100.0
CSS0009803 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 4.2e-167 592.0 507 84.8
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 2.2e-51 207.6 200 58.0
vmacro20024 Vaccinium macrocarpon HOM05D001944 ORTHO05D017225 1.9e-34 151.4 167 55.7
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.3e-30 138.7 198 42.4
Actinidia19662 Actinidia chinensis HOM05D001944 ORTHO05D002405 7.7e-28 129.4 255 40.0
Rhsim05G0179600 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.0e-27 129.0 204 44.6
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.2e-25 122.1 211 39.8
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 1.4e-24 118.6 154 46.1
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 1.4e-24 118.6 169 43.2
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.3e-22 112.1 170 42.4
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 5.4e-21 106.7 155 41.3
GSVIVG01025215001 Vitis vinifera HOM05D001944 ORTHO05D002405 5.4e-21 106.7 201 39.8
PGSC0003DMG400019409 Solanum tuberosum HOM05D001944 ORTHO05D002405 1.0e-19 102.4 177 37.3
Solyc10g011940.1 Solanum lycopersicum HOM05D001944 ORTHO05D002405 2.3e-19 101.3 173 37.0
Sopen10g005720 Solanum pennellii HOM05D001944 ORTHO05D002405 3.0e-19 100.9 173 37.0
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 3.9e-19 100.5 182 38.5
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 5.0e-19 100.1 160 39.4
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 6.6e-19 99.8 141 43.3
COL.COLO4_18305 Corchorus olitorius HOM05D001944 ORTHO05D002405 8.6e-19 99.4 163 41.7
Nitab4.5_0000101g0280 Nicotiana tabacum HOM05D001944 ORTHO05D002405 8.6e-19 99.4 142 44.4
Nitab4.5_0005320g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.1e-18 99.0 190 38.4
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 1.5e-18 98.6 209 35.4
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 1.9e-18 98.2 175 41.7
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 3.3e-18 97.4 156 40.4
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 7.3e-18 96.3 151 39.1
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 9.5e-18 95.9 157 38.2
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 1.2e-17 95.5 199 37.2
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.6e-17 94.0 216 36.6
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.6e-17 94.0 216 36.6
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 6.2e-17 93.2 160 37.5
Peaxi162Scf00123g00910 Petunia axillaris HOM05D001944 ORTHO05D002405 6.2e-17 93.2 227 36.1
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 2.3e-16 91.3 188 36.7
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 5.2e-16 90.1 153 39.2
Dinv32719 Davidia involucrata HOM05D001944 ORTHO05D002405 5.2e-16 90.1 152 38.8
Oeu036621.1 Olea europaea HOM05D001944 ORTHO05D002405 6.8e-16 89.7 180 34.4
EL10Ac7g16595 Beta vulgaris HOM05D001944 ORTHO05D002405 1.2e-15 89.0 172 32.6
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 2.0e-15 88.2 158 39.2
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 4.4e-15 87.0 185 36.2
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 5.8e-15 86.7 143 39.9
Lsat_1_v5_gn_1_53241 Lactuca sativa HOM05D001944 ORTHO05D002405 9.8e-15 85.9 115 41.7
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.3e-14 85.5 125 40.8
Actinidia20444 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.7e-14 85.1 158 37.3
SGA_v2.0_scaffold40G15544 Striga asiatica HOM05D001944 ORTHO05D002405 1.7e-14 85.1 182 36.8
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 2.9e-14 84.3 143 39.2
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 2.9e-14 84.3 149 36.9
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 3.7e-14 84.0 120 43.3
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 4.9e-14 83.6 143 39.2
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 4.9e-14 83.6 156 34.0
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 8.3e-14 82.8 145 38.6
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 8.3e-14 82.8 210 33.8
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 1.1e-13 82.4 186 34.4
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 1.4e-13 82.0 150 37.3
CSS0007832 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 1.9e-13 81.6 175 34.9
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 1.9e-13 81.6 162 35.2
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 2.4e-13 81.3 173 34.1
Hma1.2p1_0307F.1_g119910 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 2.4e-13 81.3 196 33.7
Lj1A201T36 Lonicera japonica HOM05D001944 ORTHO05D002405 2.4e-13 81.3 100 43.0
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 2.4e-13 81.3 222 33.3
Lsat_1_v5_gn_1_53160 Lactuca sativa HOM05D001944 ORTHO05D002405 3.2e-13 80.9 213 33.3
SGA_v2.0_scaffold40G15535 Striga asiatica HOM05D001944 ORTHO05D017225 3.2e-13 80.9 145 37.2
Nitab4.5_0006619g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 4.1e-13 80.5 212 32.5
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 5.4e-13 80.1 162 35.2
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 5.4e-13 80.1 164 36.0
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 7.0e-13 79.7 179 36.9
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 7.0e-13 79.7 141 40.4
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 9.2e-13 79.3 150 35.3
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 1.2e-12 79.0 89 46.1
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.6e-12 78.6 115 38.3
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 1.6e-12 78.6 138 37.0
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.6e-12 78.6 215 32.1
Migut.J00530 Erythranthe guttata HOM05D001944 ORTHO05D017225 2.0e-12 78.2 150 36.7
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 2.0e-12 78.2 201 31.8
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 2.7e-12 77.8 152 32.9
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 3.5e-12 77.4 180 33.3
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 3.5e-12 77.4 180 33.3
HanXRQChr13g0405021 Helianthus annuus HOM05D001944 ORTHO05D002405 3.5e-12 77.4 94 43.6
Peaxi162Scf00948g00114 Petunia axillaris HOM05D001944 ORTHO05D002405 3.5e-12 77.4 165 35.2
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 4.6e-12 77.0 166 34.3
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 4.6e-12 77.0 141 39.7
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 6.0e-12 76.6 212 32.1
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 6.0e-12 76.6 154 36.4
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 6.0e-12 76.6 147 32.0
MD11G1140000 Malus domestica HOM05D001944 ORTHO05D002405 7.8e-12 76.3 163 32.5
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.0e-11 75.9 170 35.3
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 1.0e-11 75.9 108 38.9
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 1.3e-11 75.5 163 36.2
HPP92_003456 Vanilla planifolia HOM05D041147 ORTHO05D017225 2.3e-11 74.7 171 32.7
Cpa.g.sc311.2 Carica papaya HOM05D001944 ORTHO05D002405 3.0e-11 74.3 134 35.1
HPP92_003459 Vanilla planifolia HOM05D041147 ORTHO05D017225 3.0e-11 74.3 163 33.1
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 3.9e-11 73.9 144 34.0
Oeu056302.1 Olea europaea HOM05D001944 ORTHO05D002405 3.9e-11 73.9 100 42.0
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 3.9e-11 73.9 147 33.3
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 5.0e-11 73.6 169 33.7
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 8.6e-11 72.8 201 31.8
HanXRQChr13g0421871 Helianthus annuus HOM05D001944 ORTHO05D002405 8.6e-11 72.8 91 42.9
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 8.6e-11 72.8 154 35.1
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 8.6e-11 72.8 132 40.2
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 1.9e-10 71.6 195 29.7
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 2.5e-10 71.2 200 29.5
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 4.3e-10 70.5 155 36.1
CAN.G363.5 Capsicum annuum HOM05D001944 ORTHO05D002405 7.3e-10 69.7 100 41.0
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 9.5e-10 69.3 113 39.8
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 1.2e-09 68.9 102 40.2
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.6e-09 68.6 158 32.9
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 2.1e-09 68.2 173 34.1
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 2.1e-09 68.2 191 31.9
Sc20g0005300 Simmondsia chinensis HOM05D001944 ORTHO05D002405 2.1e-09 68.2 146 36.3
Lalb_Chr19g0137131 Lupinus albus HOM05D001944 ORTHO05D011318 2.8e-09 67.8 154 30.5
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 2.8e-09 67.8 205 33.2
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 3.6e-09 67.4 195 28.2
arahy.Tifrunner.gnm1.ann1.D4VV12 Arachis hypogaea HOM05D001944 ORTHO05D002405 4.7e-09 67.0 194 28.9
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 4.7e-09 67.0 134 36.6
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 6.2e-09 66.6 113 34.5
Glyma.12G077400 Glycine max HOM05D001944 ORTHO05D011318 1.1e-08 65.9 138 34.1
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 1.1e-08 65.9 173 33.5
arahy.Tifrunner.gnm1.ann1.H0XM2A Arachis hypogaea HOM05D001944 ORTHO05D011318 1.4e-08 65.5 162 30.2
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 1.4e-08 65.5 102 39.2
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 1.4e-08 65.5 202 28.7
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 1.4e-08 65.5 110 34.5
Psat7g192240 Pisum sativum HOM05D001944 ORTHO05D011318 1.4e-08 65.5 95 37.9
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 2.3e-08 64.7 185 30.3
arahy.Tifrunner.gnm1.ann1.02PMC1 Arachis hypogaea HOM05D001944 ORTHO05D002405 3.1e-08 64.3 177 29.4
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 4.0e-08 63.9 171 31.0
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 5.2e-08 63.5 95 35.8
Prupe.6G104700 Prunus persica HOM05D001944 ORTHO05D002405 5.2e-08 63.5 148 29.7
vmacro07496 Vaccinium macrocarpon HOM05D001944 ORTHO05D017225 5.2e-08 63.5 66 48.5
ECA248G2037 Erigeron canadensis HOM05D001944 ORTHO05D002405 6.8e-08 63.2 161 28.0
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 6.8e-08 63.2 170 31.8
Ca_19290_v3 Cicer arietinum L. HOM05D001944 ORTHO05D011318 8.9e-08 62.8 189 29.6
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 8.9e-08 62.8 186 31.2
ECA248G2804 Erigeron canadensis HOM05D001944 ORTHO05D002405 1.2e-07 62.4 90 42.2
CAN.G631.45 Capsicum annuum HOM05D000550 ORTHO05D009781 1.5e-07 62.0 155 32.9
CDE02G3605 Ceratophyllum demersum HOM05D001944 ORTHO05D002405 1.5e-07 62.0 81 38.3
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 1.5e-07 62.0 173 30.1
Lj3g0022042 Lotus japonicus HOM05D001944 ORTHO05D011318 1.5e-07 62.0 117 35.9
Medtr4g058650 Medicago truncatula HOM05D001944 ORTHO05D011318 1.5e-07 62.0 148 30.4
PSO675G7498 Papaver somniferum HOM05D001944 ORTHO05D002405 2.0e-07 61.6 82 39.0
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 2.6e-07 61.2 152 28.9
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 2.6e-07 61.2 86 44.2
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 3.4e-07 60.8 190 28.4
PSO384G1822 Papaver somniferum HOM05D001944 ORTHO05D002405 3.4e-07 60.8 82 36.6
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 4.4e-07 60.5 110 39.1
arahy.Tifrunner.gnm1.ann1.BHY38Y Arachis hypogaea HOM05D001944 ORTHO05D002405 5.8e-07 60.1 166 31.3
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 5.8e-07 60.1 161 29.2
ECA248G2414 Erigeron canadensis HOM05D001944 ORTHO05D002405 7.5e-07 59.7 160 29.4
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 9.8e-07 59.3 208 29.8
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 2.2e-06 58.2 108 32.4
PSO339G2779 Papaver somniferum HOM05D001944 ORTHO05D002405 2.9e-06 57.8 81 37.0
Actinidia40021 Actinidia chinensis HOM05D001944 ORTHO05D017225 3.7e-06 57.4 47 61.7
VMungo1080G1631 Vigna mungo HOM05D001944 ORTHO05D002405 6.4e-06 56.6 154 27.9
arahy.Tifrunner.gnm1.ann1.Q55GHJ Arachis hypogaea HOM05D001944 ORTHO05D002405 8.3e-06 56.2 166 30.7
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 8.3e-06 56.2 160 29.4
Sed0004333 Sechium edule HOM05D001944 ORTHO05D002405 8.3e-06 56.2 62 46.8


User provided reference genes

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