Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 8.5e-140 500.4 258 100.0
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 2.3e-97 359.4 194 97.4
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 1.6e-66 256.9 254 59.4
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 4.9e-63 245.4 240 62.9
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.1e-62 244.2 268 55.6
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 2.9e-55 219.5 275 50.5
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 2.6e-48 196.4 283 43.5
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.1e-46 191.0 250 48.8
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 7.2e-46 188.3 253 45.1
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 5.1e-44 182.2 239 46.4
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 4.3e-43 179.1 252 43.7
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 1.6e-42 177.2 238 45.4
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 2.8e-42 176.4 291 39.5
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 4.8e-42 175.6 249 44.6
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 1.1e-41 174.5 244 44.7
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 2.4e-41 173.3 244 44.7
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 3.1e-41 172.9 271 42.1
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 1.0e-39 167.9 243 45.7
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.0e-39 167.9 266 42.9
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.7e-39 167.2 264 43.2
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 2.2e-39 166.8 236 47.0
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 3.8e-39 166.0 236 44.5
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 5.0e-39 165.6 246 43.9
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 5.5e-38 162.2 244 43.4
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 3.6e-37 159.5 245 42.9
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 1.0e-36 157.9 228 43.4
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 6.7e-36 155.2 199 46.7
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.3e-34 151.0 211 42.2
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 1.4e-33 147.5 230 42.2
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 2.4e-33 146.7 225 42.2
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 3.1e-33 146.4 227 45.8
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 4.1e-33 146.0 241 41.9
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 9.1e-33 144.8 310 35.5
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 3.4e-32 142.9 234 41.0
CSS0036166 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.3e-31 141.0 67 100.0
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.4e-30 137.5 474 28.3
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.4e-30 137.5 436 29.4
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 5.5e-30 135.6 211 41.7
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 1.6e-29 134.0 217 39.2
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 2.7e-29 133.3 226 41.6
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 2.6e-27 126.7 221 38.9
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 4.4e-27 125.9 222 41.9
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 2.8e-26 123.2 237 40.5
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 4.1e-25 119.4 256 33.6
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 4.1e-25 119.4 107 53.3
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 1.0e-23 114.8 105 51.4
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 3.8e-23 112.8 211 38.4
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 8.0e-21 105.1 105 56.2
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 2.3e-20 103.6 87 54.0
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 2.7e-16 90.1 76 55.3
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 3.8e-15 86.3 130 40.0
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 1.1e-14 84.7 254 30.3
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 2.5e-14 83.6 99 44.4
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 4.4e-11 72.8 207 30.4
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 8.3e-10 68.6 108 34.3
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 3.1e-09 66.6 96 35.4
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 9.1e-09 65.1 73 43.8
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 9.1e-09 65.1 73 43.8
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 9.1e-09 65.1 73 43.8
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.2e-08 64.7 146 30.8
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.2e-08 64.7 91 36.3
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 2.0e-08 63.9 165 30.9
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.7e-08 63.5 187 27.3
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 2.7e-08 63.5 117 34.2
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.5e-08 63.2 112 30.4
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 4.5e-08 62.8 91 38.5
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.5e-08 62.8 181 28.2
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 4.5e-08 62.8 92 34.8
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 5.9e-08 62.4 93 37.6
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 7.7e-08 62.0 74 39.2
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 7.7e-08 62.0 148 29.7
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 7.7e-08 62.0 117 32.5
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.0e-07 61.6 69 43.5
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.0e-07 61.6 135 29.6
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.3e-07 61.2 92 33.7
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 2.2e-07 60.5 145 29.7
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.2e-07 60.5 71 42.3
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 2.2e-07 60.5 82 36.6
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.9e-07 60.1 74 36.5
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.9e-07 60.1 91 37.4
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 2.9e-07 60.1 212 26.9
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 3.8e-07 59.7 59 44.1
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 5.0e-07 59.3 90 36.7
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 5.0e-07 59.3 241 25.7
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 6.5e-07 58.9 72 38.9
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.5e-07 58.9 226 26.5
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 6.5e-07 58.9 159 26.4
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 8.5e-07 58.5 71 39.4
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.1e-06 58.2 87 36.8
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.1e-06 58.2 94 35.1
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.1e-06 58.2 71 40.8
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.5e-06 57.8 59 45.8
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.5e-06 57.8 73 42.5
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 1.5e-06 57.8 69 40.6
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.9e-06 57.4 188 26.6
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.9e-06 57.4 214 28.5
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.9e-06 57.4 87 35.6
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.9e-06 57.4 220 26.4
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.9e-06 57.4 163 28.2
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 2.5e-06 57.0 84 35.7
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 2.5e-06 57.0 181 26.0
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.5e-06 57.0 132 33.3
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.5e-06 57.0 94 35.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.5e-06 57.0 138 30.4
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 2.5e-06 57.0 167 31.7
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.2e-06 56.6 67 41.8
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 3.2e-06 56.6 208 24.5
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 3.2e-06 56.6 67 41.8
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 3.2e-06 56.6 67 41.8
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 3.2e-06 56.6 67 41.8
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 3.2e-06 56.6 261 26.4
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.2e-06 56.6 148 29.1
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.2e-06 56.6 148 29.1
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 3.2e-06 56.6 99 33.3
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 4.2e-06 56.2 93 33.3
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 4.2e-06 56.2 181 26.0
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 4.2e-06 56.2 167 26.9
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 4.2e-06 56.2 190 28.9
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 5.5e-06 55.8 156 26.9
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 5.5e-06 55.8 149 29.5
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 7.2e-06 55.5 67 41.8
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 7.2e-06 55.5 176 25.6
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 7.2e-06 55.5 103 31.1
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 7.2e-06 55.5 71 39.4
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 7.2e-06 55.5 209 25.8
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 9.4e-06 55.1 87 35.6
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 9.4e-06 55.1 192 28.1
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 9.4e-06 55.1 154 26.6
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 9.4e-06 55.1 91 30.8
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 9.4e-06 55.1 137 29.9
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 9.4e-06 55.1 171 29.2
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 9.4e-06 55.1 224 24.6
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 9.4e-06 55.1 188 27.1


User provided reference genes

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