Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 0.0e+00 1589.3 859 100.0
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 0.0e+00 1230.3 866 77.9
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 0.0e+00 1226.8 878 77.3
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 0.0e+00 1202.6 912 72.5
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 0.0e+00 1199.5 909 73.8
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 0.0e+00 1198.7 878 75.2
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 0.0e+00 1138.6 799 78.3
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 7.6e-310 1067.0 879 68.8
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 4.2e-308 1061.2 750 79.1
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 7.1e-308 1060.4 879 68.6
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 7.3e-305 1050.4 764 78.0
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 2.8e-304 1048.5 866 67.6
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 6.0e-299 1030.8 804 72.1
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 5.6e-297 1024.2 868 67.7
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.2e-291 1006.5 895 65.7
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 6.0e-291 1004.2 882 66.3
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 6.2e-288 994.2 867 66.9
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.4e-284 983.0 872 64.9
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.7e-280 968.4 873 63.3
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 6.3e-280 967.6 873 63.5
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.4e-279 966.5 887 62.5
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 2.4e-279 965.7 865 64.9
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.6e-278 962.2 868 64.2
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 7.7e-278 960.7 868 62.7
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 7.2e-276 954.1 861 65.4
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.5e-273 946.4 880 62.5
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 3.3e-273 945.3 885 63.3
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 4.3e-273 944.9 903 62.6
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 7.4e-273 944.1 881 64.4
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.8e-272 942.2 881 63.6
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.2e-268 928.3 873 62.3
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 5.5e-268 927.9 876 61.6
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 9.4e-268 927.2 859 63.6
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.5e-265 919.8 843 61.4
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 7.4e-265 917.5 873 62.4
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 6.3e-264 914.4 873 60.8
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.8e-263 912.9 861 63.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 9.1e-263 910.6 873 60.6
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 4.5e-262 908.3 881 61.0
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.9e-262 907.9 861 63.0
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.1e-260 903.7 870 61.1
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.8e-255 886.3 948 56.4
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 5.3e-255 884.8 870 61.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 9.1e-255 884.0 837 61.5
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.6e-254 882.5 861 61.9
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 4.5e-254 881.7 864 61.6
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.3e-253 880.2 862 60.2
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.7e-253 879.8 864 59.5
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 8.5e-253 877.5 879 58.6
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 7.2e-252 874.4 839 60.3
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.1e-251 872.8 864 60.0
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 3.6e-251 872.1 917 59.3
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.8e-250 869.8 883 59.2
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 4.8e-248 861.7 845 60.2
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 8.3e-248 860.9 788 63.8
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.4e-247 860.1 845 60.6
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 3.1e-247 859.0 853 60.1
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.6e-246 856.7 887 59.9
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 5.0e-245 851.7 879 58.5
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 6.5e-245 851.3 880 58.2
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 5.5e-244 848.2 881 60.0
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 7.2e-244 847.8 872 57.9
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 7.2e-244 847.8 872 59.7
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 5.2e-242 841.6 859 58.7
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 1.2e-241 840.5 863 59.1
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.5e-241 840.1 887 59.2
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 5.7e-241 838.2 838 60.6
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.7e-240 836.6 888 59.0
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.8e-239 833.2 870 58.6
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 3.1e-239 832.4 766 63.6
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 7.0e-239 831.2 878 58.9
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.7e-238 829.3 872 60.0
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 2.9e-237 825.9 897 54.8
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 1.5e-236 823.5 890 59.2
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 2.1e-235 819.7 877 57.8
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.3e-232 810.4 843 58.1
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.6e-230 803.5 882 57.5
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.3e-229 800.4 831 57.2
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.7e-229 800.0 871 56.8
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.9e-229 799.3 882 57.1
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.6e-227 793.5 867 56.5
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.3e-226 789.6 882 56.8
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.0e-222 776.5 786 58.8
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 6.0e-222 775.0 879 54.3
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 4.3e-220 768.8 855 55.0
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.2e-217 760.8 844 56.6
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.2e-217 760.8 845 55.6
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.5e-217 760.4 823 58.1
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 7.5e-217 758.1 870 54.6
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.9e-215 753.4 878 53.6
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 5.4e-215 751.9 869 55.1
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-211 740.7 856 55.0
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.8e-210 736.9 879 54.2
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 8.3e-208 728.0 662 62.4
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 5.4e-207 725.3 722 59.0
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.2e-206 724.2 810 53.6
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 9.6e-204 714.5 878 52.3
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 9.6e-204 714.5 829 54.9
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.6e-203 713.8 864 53.9
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.6e-201 706.4 855 51.7
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.4e-199 699.9 868 54.1
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.4e-199 699.9 620 62.6
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 2.3e-197 693.3 823 54.6
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 3.1e-194 682.9 861 50.4
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 4.0e-194 682.6 680 59.9
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.4e-193 679.1 871 50.1
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 3.6e-187 659.4 893 49.0
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 6.9e-186 655.2 704 56.8
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 6.4e-184 648.7 856 50.6
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 5.6e-180 635.6 808 49.1
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.1e-178 631.3 810 49.6
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.4e-178 630.9 742 52.0
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.6e-161 573.5 756 51.5
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 5.9e-161 572.4 837 45.9
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.2e-159 566.6 867 46.0
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 8.8e-157 558.5 756 51.3
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.3e-155 554.7 862 44.3
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.7e-155 554.3 752 51.3
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 3.4e-153 546.6 752 51.3
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 5.0e-152 542.7 751 50.6
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 3.6e-150 536.6 849 45.1
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 2.6e-148 530.4 846 44.8
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 5.3e-146 522.7 798 47.2
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.5e-145 519.6 843 42.6
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.0e-144 518.5 752 48.7
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 7.5e-132 475.7 751 45.8
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.6e-129 468.0 756 47.0
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 2.1e-126 457.6 737 44.9
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.7e-126 457.2 739 44.8
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 6.3e-123 446.0 501 54.3
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.6e-121 441.4 739 44.0
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.0e-121 441.0 732 44.7
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 7.7e-121 439.1 737 43.8
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 6.2e-110 402.9 718 42.5
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 8.0e-110 402.5 411 56.4
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-109 401.7 319 68.3
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-109 401.7 319 68.3
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 3.9e-104 383.6 373 59.0
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.4e-90 338.6 980 33.3
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 9.3e-82 309.3 804 35.7
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 3.0e-80 304.3 665 38.0
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 5.1e-80 303.5 898 34.4
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.7e-72 278.5 419 43.4
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.7e-72 278.5 737 35.1
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.3e-71 274.2 811 32.7
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.4e-71 273.1 695 33.2
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 9.6e-71 272.7 309 56.3
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 3.1e-61 241.1 355 45.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 2.9e-43 181.4 163 59.5
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 3.0e-40 171.4 143 72.7
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.3e-38 166.0 252 43.3
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 2.8e-38 164.9 98 83.7
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 6.9e-37 160.2 144 62.5
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-36 159.5 130 67.7
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 2.7e-33 148.3 119 69.7
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 6.1e-33 147.1 173 49.7
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 3.5e-28 131.3 188 44.1
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.6e-25 122.5 127 52.0
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 1.0e-24 119.8 163 44.8
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 2.6e-23 115.2 205 40.5
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 2.2e-22 112.1 127 49.6
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 3.7e-22 111.3 125 49.6
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 2.4e-21 108.6 77 74.0
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 4.1e-21 107.8 132 54.5
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 2.7e-17 95.1 196 37.2
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 8.0e-17 93.6 411 29.2
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 1.4e-16 92.8 477 27.7
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.1e-13 83.2 99 55.6
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 5.4e-13 80.9 137 42.3
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 7.0e-13 80.5 186 38.2
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 2.0e-12 79.0 86 50.0
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 2.0e-12 79.0 86 50.0
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 5.9e-12 77.4 207 36.7
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 8.5e-11 73.6 45 77.8
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 1.5e-10 72.8 63 60.3
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 2.5e-10 72.0 96 45.8
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 5.5e-10 70.9 163 36.8
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 6.1e-09 67.4 34 91.2
CAN.G300.4 Capsicum annuum HOM05D000541 ORTHO05D000137 3.0e-08 65.1 83 47.0
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 8.8e-08 63.5 47 70.2
CAN.G578.12 Capsicum annuum HOM05D001816 ORTHO05D004439 6.3e-06 57.4 59 50.8


User provided reference genes

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