Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 2.3e-207 725.3 368 100.0
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.1e-204 716.5 368 98.9
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 1.2e-171 606.7 371 83.3
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 1.9e-164 582.8 369 81.0
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 7.1e-164 580.9 369 82.7
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 1.3e-162 576.6 368 81.0
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 1.7e-162 576.2 370 81.9
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 5.1e-162 574.7 371 82.5
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 6.6e-162 574.3 371 80.3
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 8.6e-162 573.9 371 80.3
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 1.9e-161 572.8 375 82.1
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 3.3e-161 572.0 372 80.6
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 4.3e-161 571.6 370 79.5
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 3.6e-160 568.5 370 79.5
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 1.1e-159 567.0 397 78.1
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.4e-159 566.6 369 78.9
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 2.4e-159 565.8 376 78.7
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 2.0e-158 562.8 372 76.6
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 5.8e-158 561.2 374 79.4
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 5.8e-158 561.2 378 78.8
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 1.7e-157 559.7 372 78.5
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 3.2e-156 555.4 385 77.1
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.2e-155 553.5 374 78.6
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 1.3e-154 550.1 383 76.0
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 1.3e-154 550.1 374 76.5
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 1.7e-154 549.7 325 87.4
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 2.3e-154 549.3 367 77.4
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 3.9e-154 548.5 369 78.6
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 3.9e-154 548.5 375 76.8
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 6.6e-154 547.7 365 78.6
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 1.1e-153 547.0 362 80.1
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 5.6e-153 544.7 373 75.3
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 5.6e-153 544.7 357 80.1
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 9.6e-153 543.9 369 77.8
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 2.1e-152 542.7 377 77.5
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 1.4e-151 540.0 375 75.2
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.4e-151 540.0 368 78.0
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 3.1e-151 538.9 363 78.2
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.5e-150 536.6 340 81.8
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 1.5e-150 536.6 372 75.0
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 5.8e-150 534.6 376 76.1
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 5.8e-150 534.6 376 76.1
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 7.6e-150 534.3 375 76.5
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 7.6e-150 534.3 375 76.5
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 7.6e-150 534.3 382 74.6
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 7.6e-150 534.3 376 76.1
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 1.7e-149 533.1 372 77.2
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 1.7e-149 533.1 375 76.0
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 2.2e-149 532.7 371 76.5
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 2.2e-149 532.7 363 77.1
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 2.2e-149 532.7 382 74.6
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 2.9e-149 532.3 385 74.5
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 3.8e-149 531.9 373 76.4
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 1.1e-148 530.4 373 76.4
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 2.4e-148 529.3 367 76.3
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 3.2e-148 528.9 373 76.9
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 7.1e-148 527.7 386 74.4
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 7.1e-148 527.7 376 74.2
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 2.7e-147 525.8 338 79.6
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 3.5e-147 525.4 364 76.4
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 4.6e-147 525.0 374 75.1
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 7.8e-147 524.2 372 76.3
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 1.3e-146 523.5 370 76.5
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.9e-145 519.6 374 74.1
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 1.3e-144 516.9 337 80.7
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 2.1e-144 516.2 387 73.4
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 8.1e-144 514.2 408 67.9
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.4e-143 512.7 338 79.9
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 3.1e-143 512.3 382 74.3
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 4.0e-143 511.9 370 75.9
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.3e-143 511.5 361 75.9
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 2.0e-142 509.6 361 73.4
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 4.5e-142 508.4 377 71.6
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 2.9e-141 505.8 380 73.2
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 8.4e-141 504.2 368 72.6
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 1.1e-140 503.8 370 73.2
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 1.4e-140 503.4 368 75.3
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 2.4e-140 502.7 366 72.1
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 5.4e-140 501.5 367 73.3
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 2.1e-139 499.6 364 74.5
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 6.0e-139 498.0 368 71.5
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 1.9e-137 493.0 368 71.2
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 2.5e-137 492.7 331 79.5
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 7.4e-137 491.1 342 75.7
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.1e-136 489.6 331 79.2
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 1.8e-135 486.5 279 88.9
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.7e-133 479.9 324 78.4
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 2.2e-133 479.6 324 78.7
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.4e-132 476.1 387 69.8
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 9.3e-132 474.2 368 69.6
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.6e-131 473.4 367 67.3
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 2.1e-131 473.0 391 66.2
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 2.1e-131 473.0 320 78.1
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 6.0e-131 471.5 383 66.1
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 3.0e-130 469.2 375 69.1
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 3.9e-130 468.8 359 71.0
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 4.3e-129 465.3 383 66.8
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 4.3e-129 465.3 361 67.9
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 2.4e-127 459.5 331 73.4
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 6.7e-122 441.4 287 81.9
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 2.8e-120 436.0 343 69.4
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 3.4e-118 429.1 360 67.2
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 3.6e-115 419.1 287 74.9
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 1.8e-114 416.8 309 69.6
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 1.8e-111 406.8 290 71.4
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 2.1e-107 393.3 233 86.3
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 6.1e-107 391.7 327 63.0
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 2.0e-102 376.7 285 66.3
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.3e-96 357.5 306 62.4
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 1.6e-94 350.5 310 63.5
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 1.5e-92 344.0 206 83.5
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 4.5e-86 322.4 203 80.3
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 2.7e-83 313.2 283 58.3
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 4.0e-82 309.3 262 58.8
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.6e-81 306.6 243 69.1
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 1.6e-78 297.4 279 59.9
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 1.3e-77 294.3 263 55.9
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 2.9e-77 293.1 234 69.2
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 1.2e-67 261.2 220 61.8
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 4.9e-64 249.2 156 82.7
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 1.7e-61 240.7 187 69.5
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 9.5e-60 235.0 188 68.1
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 6.8e-58 228.8 179 67.6
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 1.3e-56 224.6 179 67.0
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 1.2e-51 208.0 203 57.1
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 3.4e-49 199.9 109 91.7
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 6.4e-48 195.7 116 85.3
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 5.4e-47 192.6 137 75.9
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 6.0e-38 162.5 114 69.3
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 6.0e-30 136.0 244 36.5
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 3.3e-28 130.2 255 33.7
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 4.0e-26 123.2 188 45.2
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 7.6e-25 119.0 158 44.9
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 2.4e-23 114.0 167 41.3
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 1.8e-21 107.8 77 76.6
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 3.0e-21 107.1 84 59.5
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 6.7e-21 105.9 74 70.3
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 1.1e-20 105.1 241 30.3
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 1.1e-20 105.1 110 57.3
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 3.7e-19 100.1 50 98.0


User provided reference genes

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