Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041015 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 1.9e-29 131.7 63 100.0
CSS0001667 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 1.3e-22 109.0 51 100.0
Haze_14511 Corylus avellana HOM05D004714 ORTHO05D005614 2.3e-22 108.2 51 98.0
arahy.Tifrunner.gnm1.ann1.72XQC0 Arachis hypogaea HOM05D004714 ORTHO05D005614 5.1e-22 107.1 51 96.1
arahy.Tifrunner.gnm1.ann1.ZK581Z Arachis hypogaea HOM05D004714 ORTHO05D005614 5.1e-22 107.1 51 96.1
CiPaw.08G034200 Carya illinoinensis HOM05D004714 ORTHO05D005614 5.1e-22 107.1 51 96.1
QL11p004848 Quercus lobata HOM05D004714 ORTHO05D005614 5.1e-22 107.1 51 96.1
Actinidia25713 Actinidia chinensis HOM05D004714 ORTHO05D005614 1.1e-21 105.9 51 94.1
DCAR_003032 Daucus carota HOM05D004714 ORTHO05D005614 1.1e-21 105.9 51 94.1
MD13G1245000 Malus domestica HOM05D004714 ORTHO05D005614 1.1e-21 105.9 51 94.1
Cc05_g03940 Coffea canephora HOM05D004714 ORTHO05D005614 1.5e-21 105.5 51 94.1
Dinv25435 Davidia involucrata HOM05D004714 ORTHO05D005614 1.5e-21 105.5 51 94.1
Nitab4.5_0000792g0180 Nicotiana tabacum HOM05D004714 ORTHO05D005614 1.5e-21 105.5 51 94.1
Nitab4.5_0006785g0020 Nicotiana tabacum HOM05D004714 ORTHO05D005614 1.5e-21 105.5 51 94.1
Solyc01g081470.4 Solanum lycopersicum HOM05D004714 ORTHO05D005614 1.5e-21 105.5 51 94.1
Sopen01g033030 Solanum pennellii HOM05D004714 ORTHO05D005614 1.5e-21 105.5 51 94.1
PGSC0003DMG400031122 Solanum tuberosum HOM05D004714 ORTHO05D005614 1.5e-21 105.5 51 94.1
Atru.chr7.820 Acer truncatum HOM05D004714 ORTHO05D005614 1.9e-21 105.1 51 94.1
MD03G1035800 Malus domestica HOM05D004714 ORTHO05D005614 1.9e-21 105.1 54 87.0
COL.COLO4_25457 Corchorus olitorius HOM05D004714 ORTHO05D005614 2.5e-21 104.8 51 94.1
Cpa.g.sc173.21 Carica papaya HOM05D004714 ORTHO05D005614 3.3e-21 104.4 51 94.1
Potri.018G088400 Populus trichocarpa HOM05D004714 ORTHO05D005614 3.3e-21 104.4 51 94.1
Rhsim05G0122400 Rhododendron simsii HOM05D004714 ORTHO05D005614 3.3e-21 104.4 51 92.2
Sabra18G0076900 Salix brachista HOM05D004714 ORTHO05D005614 3.3e-21 104.4 51 94.1
TAR623G1076 Trochodendron aralioides HOM05D004714 ORTHO05D005614 3.3e-21 104.4 51 92.2
EL10Ac6g14222 Beta vulgaris HOM05D004714 ORTHO05D005614 4.3e-21 104.0 51 92.2
FvH4_4g07660 Fragaria vesca HOM05D004714 ORTHO05D005614 4.3e-21 104.0 51 94.1
FAN07G0359 Fragaria x ananassa HOM05D004714 ORTHO05D005614 4.3e-21 104.0 51 94.1
FAN12G0160 Fragaria x ananassa HOM05D004714 ORTHO05D005614 4.3e-21 104.0 51 94.1
Lj7A660G39 Lonicera japonica HOM05D004714 ORTHO05D005614 4.3e-21 104.0 54 85.2
Prupe.1G079700 Prunus persica HOM05D004714 ORTHO05D005614 4.3e-21 104.0 51 92.2
RcHm_v2.0_Chr4g0400471 Rosa chinensis HOM05D004714 ORTHO05D005614 4.3e-21 104.0 51 94.1
RcHm_v2.0_Chr4g0400661 Rosa chinensis HOM05D004714 ORTHO05D005614 4.3e-21 104.0 51 94.1
CAN.G992.24 Capsicum annuum HOM05D004714 ORTHO05D005614 5.7e-21 103.6 51 92.2
Nn3g18335 Nelumbo nucifera HOM05D004714 ORTHO05D005614 5.7e-21 103.6 51 92.2
Peaxi162Scf00907g00027 Petunia axillaris HOM05D004714 ORTHO05D005614 5.7e-21 103.6 51 92.2
Thecc.09G180100 Theobroma cacao HOM05D004714 ORTHO05D005614 5.7e-21 103.6 51 94.1
DCAR_002998 Daucus carota HOM05D004714 ORTHO05D005614 7.4e-21 103.2 51 90.2
Glyma.08G214400 Glycine max HOM05D004714 ORTHO05D005614 7.4e-21 103.2 51 92.2
Os01g0976600 Oryza sativa ssp. japonica HOM05D004714 ORTHO05D005614 7.4e-21 103.2 51 90.2
Sc24g0003530 Simmondsia chinensis HOM05D004714 ORTHO05D005614 7.4e-21 103.2 51 90.2
VMungo0331G1132 Vigna mungo HOM05D004714 ORTHO05D005614 7.4e-21 103.2 51 92.2
MELO3C005041.2 Cucumis melo HOM05D004714 ORTHO05D005614 9.6e-21 102.8 51 90.2
QL08p018134 Quercus lobata HOM05D004714 ORTHO05D005614 9.6e-21 102.8 51 90.2
SGA_v2.0_scaffold63G21841 Striga asiatica HOM05D004714 ORTHO05D005614 9.6e-21 102.8 51 90.2
MSTRG.10455 Avicennia marina HOM05D004714 ORTHO05D005614 1.3e-20 102.4 51 90.2
Duzib168G0788 Durio zibethinus HOM05D004714 ORTHO05D005614 1.3e-20 102.4 51 92.2
FAN17G0676 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.3e-20 102.4 51 92.2
PGR142G4249 Punica granatum HOM05D004714 ORTHO05D005614 1.3e-20 102.4 51 92.2
RcHm_v2.0_Chr4g0400331 Rosa chinensis HOM05D004714 ORTHO05D005614 1.3e-20 102.4 51 92.2
SalBow4G0136 Salvia bowleyana HOM05D004714 ORTHO05D005614 1.3e-20 102.4 51 90.2
SalBow4G0166 Salvia bowleyana HOM05D004714 ORTHO05D005614 1.3e-20 102.4 51 90.2
Duzib160G0192 Durio zibethinus HOM05D004714 ORTHO05D005614 1.6e-20 102.1 51 92.2
Nn4g22433 Nelumbo nucifera HOM05D004714 ORTHO05D005614 1.6e-20 102.1 51 90.2
TWI32G1166 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 1.6e-20 102.1 51 90.2
Ciclev10009101m.g Citrus clementina HOM05D004714 ORTHO05D005614 2.1e-20 101.7 51 90.2
Dinv25399 Davidia involucrata HOM05D004714 ORTHO05D005614 2.1e-20 101.7 51 90.2
Eucgr.I01084 Eucalyptus grandis HOM05D004714 ORTHO05D005614 2.1e-20 101.7 51 90.2
Glyma.07G028400 Glycine max HOM05D004714 ORTHO05D005614 2.1e-20 101.7 51 90.2
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.1e-20 101.7 51 90.2
vmacro19765 Vaccinium macrocarpon HOM05D004714 ORTHO05D005614 2.1e-20 101.7 51 90.2
GSVIVG01024342001 Vitis vinifera HOM05D004714 ORTHO05D005614 2.1e-20 101.7 51 90.2
CDE02G3847 Ceratophyllum demersum HOM05D004714 ORTHO05D005614 2.8e-20 101.3 51 90.2
Oeu031756.1 Olea europaea HOM05D004714 ORTHO05D005614 2.8e-20 101.3 51 88.2
THA.LOC104802911 Tarenaya hassleriana HOM05D004714 ORTHO05D005614 2.8e-20 101.3 51 88.2
CsaV3_1G012970 Cucumis sativus L. HOM05D004714 ORTHO05D005614 3.7e-20 100.9 51 88.2
ECA236G1620 Erigeron canadensis HOM05D004714 ORTHO05D005614 3.7e-20 100.9 51 88.2
Lj7C659G12 Lonicera japonica HOM05D004714 ORTHO05D005614 3.7e-20 100.9 51 88.2
Phvul.010G157500 Phaseolus vulgaris HOM05D004714 ORTHO05D005614 3.7e-20 100.9 51 90.2
ATR0686G131 Amborella trichopoda HOM05D004714 ORTHO05D005614 4.8e-20 100.5 51 90.2
AUR62014206 Chenopodium quinoa HOM05D004714 ORTHO05D005614 4.8e-20 100.5 51 88.2
AUR62041230 Chenopodium quinoa HOM05D004714 ORTHO05D005614 4.8e-20 100.5 51 88.2
Lalb_Chr01g0012111 Lupinus albus HOM05D004714 ORTHO05D005614 4.8e-20 100.5 51 88.2
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 4.8e-20 100.5 51 92.2
RcHm_v2.0_Chr4g0400601 Rosa chinensis HOM05D004714 ORTHO05D005614 4.8e-20 100.5 51 92.2
Aqoxy7G03018 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 6.3e-20 100.1 51 88.2
Aqoxy7G03753 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 6.3e-20 100.1 51 88.2
CANSAT11G1559 Cannabis sativa HOM05D004714 ORTHO05D005614 6.3e-20 100.1 51 86.3
Migut.L01902 Erythranthe guttata HOM05D004714 ORTHO05D005614 6.3e-20 100.1 51 86.3
HanXRQChr05g0138351 Helianthus annuus HOM05D004714 ORTHO05D005614 6.3e-20 100.1 51 88.2
HanXRQChr06g0179551 Helianthus annuus HOM05D004714 ORTHO05D005614 6.3e-20 100.1 51 88.2
Zm00001eb398140 Zea mays HOM05D004714 ORTHO05D005614 6.3e-20 100.1 51 88.2
Gohir.A08G018200 Gossypium hirsutum HOM05D004714 ORTHO05D005614 8.2e-20 99.8 51 88.2
Gohir.D08G028800 Gossypium hirsutum HOM05D004714 ORTHO05D005614 8.2e-20 99.8 51 88.2
Sed0009644 Sechium edule HOM05D004714 ORTHO05D005614 1.1e-19 99.4 51 88.2
TWI34G0504 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 1.1e-19 99.4 51 86.3
HPP92_017314 Vanilla planifolia HOM05D004714 ORTHO05D005614 1.1e-19 99.4 51 86.3
Medtr4g009880 Medicago truncatula HOM05D004714 ORTHO05D005614 1.8e-19 98.6 51 88.2
COL.COLO4_36489 Corchorus olitorius HOM05D004714 ORTHO05D005614 4.1e-19 97.4 51 84.3
Duzib168G1985 Durio zibethinus HOM05D004714 ORTHO05D005614 4.1e-19 97.4 51 84.3
SMO115G0141 Selaginella moellendorffii HOM05D004714 ORTHO05D005614 4.1e-19 97.4 51 86.3
PSO541G2874 Papaver somniferum HOM05D004714 ORTHO05D005614 5.3e-19 97.1 51 86.3
Psat7g257720 Pisum sativum HOM05D004714 ORTHO05D005614 5.3e-19 97.1 51 86.3
TPR.G38676 Trifolium pratense HOM05D004714 ORTHO05D005614 5.3e-19 97.1 51 86.3
Gohir.D09G156950 Gossypium hirsutum HOM05D004714 ORTHO05D005614 6.9e-19 96.7 54 79.6
Lj3g0005475 Lotus japonicus HOM05D004714 ORTHO05D005614 6.9e-19 96.7 51 84.3
Thecc.09G241900 Theobroma cacao HOM05D004714 ORTHO05D005614 6.9e-19 96.7 51 82.4
SHI02880 Sapria himalayana HOM05D004714 ORTHO05D005614 9.0e-19 96.3 51 86.3
SEGI_34543 Sequoiadendron giganteum HOM05D004714 ORTHO05D005614 9.0e-19 96.3 51 86.3
AagrBONN_evm.TU.Sc2ySwM_117.468 Anthoceros agrestis HOM05D004714 ORTHO05D005614 1.2e-18 95.9 51 84.3
Carub.0008s1781 Capsella rubella HOM05D004714 ORTHO05D005614 1.2e-18 95.9 51 82.4
PSO675G7537 Papaver somniferum HOM05D004714 ORTHO05D005614 1.2e-18 95.9 51 84.3
Pp3c3_21690 Physcomitrium patens HOM05D004714 ORTHO05D005614 1.2e-18 95.9 51 84.3
unitig_8.g4678 Utricularia gibba HOM05D004714 ORTHO05D005614 1.2e-18 95.9 51 84.3
C03p15050 Brassica napus HOM05D004714 ORTHO05D005614 3.4e-18 94.4 51 82.4
BolC3t13947H Brassica oleracea HOM05D004714 ORTHO05D005614 3.4e-18 94.4 51 82.4
BraA02t05930Z Brassica rapa HOM05D004714 ORTHO05D005614 3.4e-18 94.4 51 82.4
BraA03t10598Z Brassica rapa HOM05D004714 ORTHO05D005614 3.4e-18 94.4 51 82.4
Gorai.006G178500 Gossypium raimondii HOM05D004714 ORTHO05D005614 3.4e-18 94.4 54 77.8
Mapoly0052s0093 Marchantia polymorpha HOM05D004714 ORTHO05D005614 3.4e-18 94.4 51 84.3
Aa31LG3G13180 Aethionema arabicum HOM05D004714 ORTHO05D005614 4.5e-18 94.0 51 82.4
BcaB01g04462 Brassica carinata HOM05D004714 ORTHO05D005614 4.5e-18 94.0 51 80.4
BcaC04g19980 Brassica carinata HOM05D004714 ORTHO05D005614 4.5e-18 94.0 51 82.4
C09p49140 Brassica napus HOM05D004714 ORTHO05D005614 4.5e-18 94.0 51 82.4
BolC9t57763H Brassica oleracea HOM05D004714 ORTHO05D005614 4.5e-18 94.0 51 82.4
Ca_12516_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 4.5e-18 94.0 51 84.3
A03p12900 Brassica napus HOM05D004714 ORTHO05D005614 7.6e-18 93.2 51 80.4
AL8G33270 Arabidopsis lyrata HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
AT5G57300 Arabidopsis thaliana HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
BcaB08g36090 Brassica carinata HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
BcaC03g14165 Brassica carinata HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
A10p14730 Brassica napus HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
C02p14380 Brassica napus HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
BolC2t07562H Brassica oleracea HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
BraA10t43556Z Brassica rapa HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
CARHR271100 Cardamine hirsuta HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
Thhalv10014276m.g Eutrema salsugineum HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
Sp6g19030 Schrenkiella parvula HOM05D004714 ORTHO05D005614 1.0e-17 92.8 51 80.4
Cre05.g245450 Chlamydomonas reinhardtii HOM05D004714 ORTHO05D005614 2.9e-17 91.3 51 78.4
CBR_g3967 Chara braunii HOM05D004714 ORTHO05D005614 1.2e-15 85.9 51 72.5
Manes.14G158566 Manihot esculenta HOM05D004714 ORTHO05D005614 2.1e-15 85.1 51 76.5
Gorai.004G025900 Gossypium raimondii HOM05D004714 ORTHO05D005614 4.6e-15 84.0 81 55.6
MCO01G546 Micromonas commoda HOM05D004714 ORTHO05D005614 1.5e-13 79.0 51 68.6
Zm00001eb362110 Zea mays HOM05D004714 ORTHO05D005614 9.7e-13 76.3 36 91.7
PRCOL_00006789 Prasinoderma coloniale HOM05D004714 ORTHO05D005614 3.7e-12 74.3 52 69.2
A02p08610 Brassica napus HOM05D004714 ORTHO05D005614 3.1e-11 71.2 36 86.1
ClCG03G002280 Citrullus lanatus HOM05D004714 ORTHO05D005614 7.7e-10 66.6 37 75.7
SGA_v2.0_scaffold905G53712 Striga asiatica HOM05D004714 ORTHO05D005614 1.7e-09 65.5 37 73.0
MD16G1253300 Malus domestica HOM05D004714 ORTHO05D005614 6.5e-09 63.5 31 90.3
Haze_26398 Corylus avellana HOM05D004714 ORTHO05D005614 1.4e-08 62.4 47 57.4
RcHm_v2.0_Chr4g0400411 Rosa chinensis HOM05D004714 ORTHO05D005614 3.2e-08 61.2 51 62.7


User provided reference genes

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