Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040997 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.8e-53 212.2 101 100.0
CSS0018128 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 9.6e-39 163.3 77 97.4
CSS0003674 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 5.9e-36 154.1 76 94.7
CSS0037197 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 7.6e-36 153.7 117 68.4
CSS0038370 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 7.6e-36 153.7 117 68.4
CSS0006140 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 5.5e-34 147.5 114 66.7
vmacro09768 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 5.5e-34 147.5 115 67.0
Aqoxy2G00201 Aquilegia oxysepala HOM05D004000 ORTHO05D004629 7.2e-34 147.1 114 64.9
Atru.chr1.77 Acer truncatum HOM05D004000 ORTHO05D004629 9.3e-34 146.7 114 65.8
Potri.008G083800 Populus trichocarpa HOM05D004000 ORTHO05D004629 1.2e-33 146.4 114 65.8
TAR627G0690 Trochodendron aralioides HOM05D004000 ORTHO05D004629 1.2e-33 146.4 114 65.8
Actinidia24665 Actinidia chinensis HOM05D004000 ORTHO05D004629 1.6e-33 146.0 114 65.8
Dinv19580 Davidia involucrata HOM05D004000 ORTHO05D004629 1.6e-33 146.0 114 64.9
Dinv42470 Davidia involucrata HOM05D004000 ORTHO05D004629 1.6e-33 146.0 114 64.9
HanXRQChr04g0125331 Helianthus annuus HOM05D004000 ORTHO05D004629 2.1e-33 145.6 114 64.0
QL04p091152 Quercus lobata HOM05D004000 ORTHO05D004629 2.1e-33 145.6 114 64.9
QL04p092275 Quercus lobata HOM05D004000 ORTHO05D004629 2.1e-33 145.6 114 64.9
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 2.1e-33 145.6 114 64.9
Actinidia37130 Actinidia chinensis HOM05D004000 ORTHO05D004629 2.7e-33 145.2 115 65.2
TWI38G0870 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 2.7e-33 145.2 115 64.3
vmacro11690 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 3.5e-33 144.8 114 65.8
MSTRG.13084 Avicennia marina HOM05D004000 ORTHO05D004629 4.6e-33 144.4 114 64.0
Nn7g36133 Nelumbo nucifera HOM05D004000 ORTHO05D004629 4.6e-33 144.4 114 64.9
Sc10g0007870 Simmondsia chinensis HOM05D004000 ORTHO05D004629 4.6e-33 144.4 114 63.2
Ciclev10005712m.g Citrus clementina HOM05D004000 ORTHO05D004629 6.1e-33 144.1 114 64.9
Nn8g41219 Nelumbo nucifera HOM05D004000 ORTHO05D004629 7.9e-33 143.7 114 64.9
Nitab4.5_0000029g0230 Nicotiana tabacum HOM05D004000 ORTHO05D004629 7.9e-33 143.7 114 64.9
Nitab4.5_0006109g0060 Nicotiana tabacum HOM05D004000 ORTHO05D004629 7.9e-33 143.7 114 64.9
Rhsim06G0243100 Rhododendron simsii HOM05D004000 ORTHO05D004629 7.9e-33 143.7 114 64.9
CiPaw.11G059500 Carya illinoinensis HOM05D004000 ORTHO05D004629 1.0e-32 143.3 114 64.0
ECA236G3922 Erigeron canadensis HOM05D004000 ORTHO05D004629 1.0e-32 143.3 114 64.0
Eucgr.F01477 Eucalyptus grandis HOM05D004000 ORTHO05D004629 1.0e-32 143.3 114 64.9
Manes.17G000700 Manihot esculenta HOM05D004000 ORTHO05D004629 1.0e-32 143.3 114 64.0
SGA_v2.0_scaffold49G18199 Striga asiatica HOM05D004000 ORTHO05D004629 1.0e-32 143.3 114 64.0
Actinidia12763 Actinidia chinensis HOM05D004000 ORTHO05D004629 1.3e-32 142.9 116 65.5
MSTRG.14568 Avicennia marina HOM05D004000 ORTHO05D004629 1.3e-32 142.9 114 64.9
Oeu044963.4 Olea europaea HOM05D004000 ORTHO05D004629 1.3e-32 142.9 114 64.0
Sed0027108 Sechium edule HOM05D004000 ORTHO05D004629 1.3e-32 142.9 114 64.0
TWI59G1464 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 1.3e-32 142.9 114 63.2
CDE05G1666 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 1.8e-32 142.5 115 63.5
Duzib213G0764 Durio zibethinus HOM05D004000 ORTHO05D004629 2.3e-32 142.1 114 65.8
Migut.H01660 Erythranthe guttata HOM05D004000 ORTHO05D004629 2.3e-32 142.1 114 62.3
Prupe.4G131300 Prunus persica HOM05D004000 ORTHO05D004629 2.3e-32 142.1 114 64.0
Cpa.g.sc32.66 Carica papaya HOM05D004000 ORTHO05D004629 3.9e-32 141.4 114 64.0
CDE05G0982 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 3.9e-32 141.4 115 63.5
PSO339G1394 Papaver somniferum HOM05D004000 ORTHO05D004629 3.9e-32 141.4 114 63.2
PSO384G1790 Papaver somniferum HOM05D004000 ORTHO05D004629 3.9e-32 141.4 114 63.2
DCAR_016849 Daucus carota HOM05D004000 ORTHO05D004629 5.1e-32 141.0 114 63.2
Solyc07g066650.4 Solanum lycopersicum HOM05D004000 ORTHO05D004629 5.1e-32 141.0 114 63.2
Sopen07g034800 Solanum pennellii HOM05D004000 ORTHO05D004629 5.1e-32 141.0 114 63.2
GSVIVG01036747001 Vitis vinifera HOM05D004000 ORTHO05D004629 5.1e-32 141.0 114 64.0
CSS0001028 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 6.7e-32 140.6 78 87.2
CANSAT56G1070 Cannabis sativa HOM05D004000 ORTHO05D004629 6.7e-32 140.6 114 63.2
Ca_03197_v3 Cicer arietinum L. HOM05D004000 ORTHO05D004629 6.7e-32 140.6 114 63.2
Glyma.08G164900 Glycine max HOM05D004000 ORTHO05D004629 6.7e-32 140.6 114 63.2
Glyma.15G262200 Glycine max HOM05D004000 ORTHO05D004629 6.7e-32 140.6 114 63.2
Phvul.005G049350 Phaseolus vulgaris HOM05D004000 ORTHO05D004629 6.7e-32 140.6 114 63.2
Psat0s1441g0160 Pisum sativum HOM05D004000 ORTHO05D004629 6.7e-32 140.6 114 63.2
Sed0027383 Sechium edule HOM05D004000 ORTHO05D004629 6.7e-32 140.6 114 63.2
VMungo1080G1629 Vigna mungo HOM05D004000 ORTHO05D004629 6.7e-32 140.6 114 63.2
Cc05_g16490 Coffea canephora HOM05D004000 ORTHO05D004629 8.7e-32 140.2 114 64.0
Lalb_Chr01g0015521 Lupinus albus HOM05D004000 ORTHO05D004629 8.7e-32 140.2 114 62.3
Peaxi162Scf00452g00229 Petunia axillaris HOM05D004000 ORTHO05D004629 8.7e-32 140.2 114 63.2
SGA_v2.0_scaffold239G44016 Striga asiatica HOM05D004000 ORTHO05D004629 8.7e-32 140.2 114 64.9
MELO3C012597.2 Cucumis melo HOM05D004000 ORTHO05D004629 1.1e-31 139.8 115 63.5
CsaV3_7G022990 Cucumis sativus L. HOM05D004000 ORTHO05D004629 1.1e-31 139.8 115 63.5
MD05G1234900 Malus domestica HOM05D004000 ORTHO05D004629 1.1e-31 139.8 114 62.3
Thecc.07G186500 Theobroma cacao HOM05D004000 ORTHO05D004629 1.1e-31 139.8 114 64.0
THA.LOC104810272 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 1.9e-31 139.0 114 61.4
TPR.G27463 Trifolium pratense HOM05D004000 ORTHO05D004629 2.5e-31 138.7 114 62.3
HPP92_020395 Vanilla planifolia HOM05D004000 ORTHO05D004629 2.5e-31 138.7 114 60.5
Gohir.D08G252100 Gossypium hirsutum HOM05D004000 ORTHO05D004629 3.3e-31 138.3 114 61.4
Gorai.004G268800 Gossypium raimondii HOM05D004000 ORTHO05D004629 3.3e-31 138.3 114 61.4
TAR629G3216 Trochodendron aralioides HOM05D004000 ORTHO05D004629 3.3e-31 138.3 114 63.2
arahy.Tifrunner.gnm1.ann1.UQZ7YG Arachis hypogaea HOM05D004000 ORTHO05D004629 7.4e-31 137.1 114 61.4
Lalb_Chr20g0108471 Lupinus albus HOM05D004000 ORTHO05D004629 7.4e-31 137.1 114 60.5
Medtr2g064415 Medicago truncatula HOM05D004000 ORTHO05D004629 7.4e-31 137.1 114 61.4
ECA240G0236 Erigeron canadensis HOM05D004000 ORTHO05D004629 9.7e-31 136.7 115 60.0
ClCG09G022790 Citrullus lanatus HOM05D004000 ORTHO05D004629 1.3e-30 136.3 108 63.9
Duzib187G0240 Durio zibethinus HOM05D004000 ORTHO05D004629 1.6e-30 136.0 114 63.2
Duzib268G1547 Durio zibethinus HOM05D004000 ORTHO05D004629 1.6e-30 136.0 114 62.3
RcHm_v2.0_Chr5g0024051 Rosa chinensis HOM05D004000 ORTHO05D004629 1.6e-30 136.0 114 61.4
CARHR087290 Cardamine hirsuta HOM05D004000 ORTHO05D004629 2.2e-30 135.6 114 60.5
HanXRQChr13g0408851 Helianthus annuus HOM05D004000 ORTHO05D004629 2.2e-30 135.6 114 60.5
Lj3g0014191 Lotus japonicus HOM05D004000 ORTHO05D004629 2.2e-30 135.6 114 61.4
THA.LOC104816986 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 2.2e-30 135.6 114 58.8
FAN25G1212 Fragaria x ananassa HOM05D004000 ORTHO05D004629 3.7e-30 134.8 114 60.5
unitig_61.g26121 Utricularia gibba HOM05D004000 ORTHO05D004629 3.7e-30 134.8 114 59.6
FAN11G2975 Fragaria x ananassa HOM05D004000 ORTHO05D004629 4.8e-30 134.4 114 59.6
FAN16G0250 Fragaria x ananassa HOM05D004000 ORTHO05D004629 4.8e-30 134.4 114 59.6
FAN21G3980 Fragaria x ananassa HOM05D004000 ORTHO05D004629 4.8e-30 134.4 114 59.6
Lsat_1_v5_gn_7_110801 Lactuca sativa HOM05D004000 ORTHO05D004629 4.8e-30 134.4 100 65.0
Thhalv10021347m.g Eutrema salsugineum HOM05D004000 ORTHO05D004629 6.3e-30 134.0 114 58.8
Os06g0233400 Oryza sativa ssp. japonica HOM05D004000 ORTHO05D004629 1.8e-29 132.5 114 57.0
MD10G1211100 Malus domestica HOM05D004000 ORTHO05D004629 2.4e-29 132.1 113 58.4
Oeu034052.1 Olea europaea HOM05D004000 ORTHO05D004629 2.4e-29 132.1 102 63.7
Sp3g10920 Schrenkiella parvula HOM05D004000 ORTHO05D004629 2.4e-29 132.1 114 57.9
AT3G12760 Arabidopsis thaliana HOM05D004000 ORTHO05D004629 4.1e-29 131.3 114 58.8
Carub.0003s1212 Capsella rubella HOM05D004000 ORTHO05D004629 4.1e-29 131.3 115 58.3
Gohir.A08G231700 Gossypium hirsutum HOM05D004000 ORTHO05D004629 4.1e-29 131.3 113 59.3
Zm00001eb194650 Zea mays HOM05D004000 ORTHO05D004629 4.1e-29 131.3 115 55.7
BcaB06g25514 Brassica carinata HOM05D004000 ORTHO05D004629 5.3e-29 131.0 114 57.0
BcaC05g29239 Brassica carinata HOM05D004000 ORTHO05D004629 5.3e-29 131.0 114 57.9
A05p36700 Brassica napus HOM05D004000 ORTHO05D004629 5.3e-29 131.0 114 57.9
C05p55150 Brassica napus HOM05D004000 ORTHO05D004629 5.3e-29 131.0 114 57.9
BolC5t34183H Brassica oleracea HOM05D004000 ORTHO05D004629 5.3e-29 131.0 114 57.9
BraA05t22474Z Brassica rapa HOM05D004000 ORTHO05D004629 5.3e-29 131.0 114 57.9
arahy.Tifrunner.gnm1.ann1.U2QCB7 Arachis hypogaea HOM05D004000 ORTHO05D004629 6.9e-29 130.6 120 58.3
Aa31LG8G60 Aethionema arabicum HOM05D004000 ORTHO05D004629 9.0e-29 130.2 124 54.0
BcaC01g04031 Brassica carinata HOM05D001323 ORTHO05D001223 9.0e-29 130.2 114 57.0
Zm00001eb279840 Zea mays HOM05D004000 ORTHO05D004629 9.0e-29 130.2 113 56.6
Ah.01g015680 Amaranthus hybridus HOM05D004000 ORTHO05D004629 1.2e-28 129.8 116 56.9
A01p40750 Brassica napus HOM05D004000 ORTHO05D004629 1.2e-28 129.8 114 57.0
BolC3t16860H Brassica oleracea HOM05D001323 ORTHO05D001223 1.2e-28 129.8 114 56.1
BraA01t04109Z Brassica rapa HOM05D004000 ORTHO05D004629 1.2e-28 129.8 114 57.0
AL3G24440 Arabidopsis lyrata HOM05D004000 ORTHO05D004629 1.5e-28 129.4 114 57.9
BraA03t12933Z Brassica rapa HOM05D001323 ORTHO05D001223 1.5e-28 129.4 114 56.1
BcaB04g18717 Brassica carinata HOM05D001323 ORTHO05D001223 2.0e-28 129.0 114 56.1
SalBow1G7638 Salvia bowleyana HOM05D004000 ORTHO05D004629 2.0e-28 129.0 137 53.3
BcaC09g48261 Brassica carinata HOM05D004000 ORTHO05D004629 2.6e-28 128.6 114 57.0
BcaB04g21038 Brassica carinata HOM05D004000 ORTHO05D004629 7.7e-28 127.1 114 55.3
Peaxi162Scf00006g01617 Petunia axillaris HOM05D004000 ORTHO05D004629 7.7e-28 127.1 115 55.7
Pp3c10_17770 Physcomitrium patens HOM05D004000 ORTHO05D004629 7.7e-28 127.1 113 57.5
EL10Ac2g03287 Beta vulgaris HOM05D004000 ORTHO05D004629 1.0e-27 126.7 102 60.8
BolC1t05181H Brassica oleracea HOM05D004000 ORTHO05D004629 1.0e-27 126.7 116 55.2
Nitab4.5_0000388g0080 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.0e-27 126.7 115 55.7
Nitab4.5_0002597g0020 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.3e-27 126.3 115 54.8
Mapoly0065s0055 Marchantia polymorpha HOM05D004000 ORTHO05D004629 2.2e-27 125.6 113 55.8
SMO364G0004 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 5.0e-27 124.4 103 60.2
Aa31LG10G40 Aethionema arabicum HOM05D004000 ORTHO05D004629 1.1e-26 123.2 114 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2611 Anthoceros agrestis HOM05D004000 ORTHO05D004629 1.1e-26 123.2 113 54.9
C03p45850 Brassica napus HOM05D001323 ORTHO05D001223 1.1e-26 123.2 101 57.4
Lj2C12T8 Lonicera japonica HOM05D004000 ORTHO05D004629 1.1e-26 123.2 94 66.0
Pp3c12_24690 Physcomitrium patens HOM05D004000 ORTHO05D004629 1.4e-26 122.9 113 54.9
A03p37780 Brassica napus HOM05D001323 ORTHO05D001223 1.9e-26 122.5 100 58.0
C01p52380 Brassica napus HOM05D004000 ORTHO05D004629 1.9e-26 122.5 125 52.0
Pp3c3_33500 Physcomitrium patens HOM05D004000 ORTHO05D004629 4.2e-26 121.3 113 58.4
CBR_g22391 Chara braunii HOM05D004000 ORTHO05D004629 7.2e-26 120.6 114 53.5
PGR004G2637 Punica granatum HOM05D004000 ORTHO05D004629 9.4e-26 120.2 114 58.8
Gorai.009G353900 Gossypium raimondii HOM05D004000 ORTHO05D004629 2.1e-25 119.0 114 52.6
Sopen12g008120 Solanum pennellii HOM05D004000 ORTHO05D004629 7.9e-25 117.1 115 50.4
RcHm_v2.0_Chr2g0106621 Rosa chinensis HOM05D004000 ORTHO05D004629 1.0e-24 116.7 116 52.6
PGSC0003DMG400009664 Solanum tuberosum HOM05D004000 ORTHO05D004629 1.0e-24 116.7 115 49.6
Solyc12g017310.3 Solanum lycopersicum HOM05D004000 ORTHO05D004629 1.8e-24 115.9 115 49.6
FAN19G2643 Fragaria x ananassa HOM05D004000 ORTHO05D004629 2.5e-23 112.1 116 52.6
FAN23G0482 Fragaria x ananassa HOM05D000049 ORTHO05D004629 2.5e-23 112.1 116 52.6
FAN26G0293 Fragaria x ananassa HOM05D004000 ORTHO05D004629 2.5e-23 112.1 116 52.6
ATR0605G256 Amborella trichopoda HOM05D004000 ORTHO05D004629 7.4e-23 110.5 89 61.8
FvH4_1g16700 Fragaria vesca HOM05D000049 ORTHO05D004629 2.2e-22 109.0 116 51.7
CAN.G321.32 Capsicum annuum HOM05D004000 ORTHO05D004629 3.7e-22 108.2 114 46.5
FAN28G2261 Fragaria x ananassa HOM05D004000 ORTHO05D004629 6.3e-22 107.5 116 50.9
Hund20115 Selenicereus undatus HOM05D004000 ORTHO05D004629 2.4e-21 105.5 51 90.2
BcaC01g04032 Brassica carinata HOM05D004000 ORTHO05D004629 4.1e-21 104.8 87 58.6
Cre12.g487400 Chlamydomonas reinhardtii HOM05D004000 ORTHO05D004629 7.9e-17 90.5 114 43.0
FAN28G0737 Fragaria x ananassa HOM05D004000 ORTHO05D004629 6.7e-16 87.4 107 51.4
SMO198G0075 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 3.3e-15 85.1 50 70.0
Gohir.D05G330150 Gossypium hirsutum HOM05D004000 ORTHO05D004629 8.2e-14 80.5 92 47.8
Rhsim04G0003200 Rhododendron simsii HOM05D004000 ORTHO05D004629 1.2e-12 76.6 92 48.9
Cre01.g014850 Chlamydomonas reinhardtii HOM05D004000 ORTHO05D004629 2.6e-12 75.5 118 35.6
Actinidia25397 Actinidia chinensis HOM05D004000 ORTHO05D004629 2.9e-11 72.0 80 51.2
SEGI_20471 Sequoiadendron giganteum HOM05D004000 ORTHO05D004629 2.9e-11 72.0 35 88.6
AUR62037658 Chenopodium quinoa HOM05D004000 ORTHO05D004629 3.8e-11 71.6 35 82.9
AUR62040875 Chenopodium quinoa HOM05D004000 ORTHO05D004629 3.8e-11 71.6 35 82.9
FvH4_3g14590 Fragaria vesca HOM05D004000 ORTHO05D004629 5.5e-10 67.8 80 47.5
PRCOL_00005347 Prasinoderma coloniale HOM05D004000 ORTHO05D004629 1.2e-09 66.6 115 33.9
CAN.G106.17 Capsicum annuum HOM05D004000 ORTHO05D000001 3.0e-08 62.0 39 64.1
TAR627G0782 Trochodendron aralioides HOM05D004000 ORTHO05D004629 6.3e-06 54.3 54 59.3


User provided reference genes

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