Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.0e-117 426.8 220 100.0
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 5.3e-98 361.3 199 97.0
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 9.9e-89 330.5 201 90.0
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 2.9e-88 328.9 199 88.4
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 3.8e-88 328.6 199 87.9
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.8e-88 328.6 199 88.9
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 8.4e-88 327.4 199 88.4
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 8.4e-88 327.4 199 87.9
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 2.4e-87 325.9 199 87.4
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.2e-87 325.5 199 87.4
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 7.1e-87 324.3 199 86.4
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 1.2e-86 323.6 199 86.9
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 1.2e-86 323.6 199 87.9
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 1.6e-86 323.2 199 84.4
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 2.7e-86 322.4 199 87.4
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 4.6e-86 321.6 199 85.4
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 4.6e-86 321.6 199 87.4
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 6.0e-86 321.2 199 86.9
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 6.0e-86 321.2 199 87.4
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 7.9e-86 320.9 199 84.9
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 7.9e-86 320.9 199 85.9
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 7.9e-86 320.9 199 84.9
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 7.9e-86 320.9 199 84.9
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.0e-85 320.5 199 85.4
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.3e-85 320.1 199 85.9
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 1.3e-85 320.1 199 86.4
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 1.8e-85 319.7 199 86.4
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 3.0e-85 318.9 199 85.9
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 5.1e-85 318.2 199 85.4
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 5.1e-85 318.2 199 85.4
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 6.7e-85 317.8 199 85.4
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 6.7e-85 317.8 199 84.4
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 8.7e-85 317.4 199 85.4
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 8.7e-85 317.4 199 84.9
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 8.7e-85 317.4 199 84.9
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.1e-84 317.0 199 85.9
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 1.1e-84 317.0 199 84.9
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 1.9e-84 316.2 199 85.4
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 1.9e-84 316.2 199 84.9
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 2.5e-84 315.8 199 85.4
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 3.3e-84 315.5 199 83.9
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 3.3e-84 315.5 199 85.4
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 3.3e-84 315.5 199 84.4
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 5.6e-84 314.7 199 84.9
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 5.6e-84 314.7 199 84.9
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 4.8e-83 311.6 199 83.9
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 8.1e-83 310.8 195 86.2
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 1.1e-82 310.5 199 83.4
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 1.1e-82 310.5 199 83.4
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 1.8e-82 309.7 203 83.7
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 1.8e-82 309.7 200 83.5
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 1.8e-82 309.7 199 82.9
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 1.8e-82 309.7 199 83.9
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 2.4e-82 309.3 199 83.9
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 2.4e-82 309.3 199 83.9
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 3.1e-82 308.9 199 83.9
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 6.9e-82 307.8 199 82.4
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 9.0e-82 307.4 200 82.0
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.0e-82 307.4 199 82.4
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.0e-82 307.4 199 82.4
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 9.0e-82 307.4 199 82.4
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 9.0e-82 307.4 199 82.4
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 1.2e-81 307.0 199 82.9
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 1.2e-81 307.0 199 82.4
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.2e-81 307.0 199 82.9
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.5e-81 306.6 199 82.9
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.0e-81 306.2 201 82.1
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 2.6e-81 305.8 199 83.4
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 2.6e-81 305.8 199 82.9
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 3.4e-81 305.4 200 83.0
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 4.5e-81 305.1 199 80.9
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 4.5e-81 305.1 200 82.0
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 4.5e-81 305.1 199 79.9
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 7.6e-81 304.3 199 82.4
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.0e-80 303.9 200 81.5
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 1.7e-80 303.1 199 81.4
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.7e-80 303.1 199 80.9
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 2.2e-80 302.8 200 80.5
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 2.2e-80 302.8 199 81.4
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.2e-80 302.8 199 80.4
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 2.2e-80 302.8 199 81.9
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 2.9e-80 302.4 199 81.4
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 2.9e-80 302.4 199 79.9
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 2.9e-80 302.4 199 81.4
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 2.9e-80 302.4 199 81.4
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 3.8e-80 302.0 199 79.9
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 6.5e-80 301.2 199 80.9
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 6.5e-80 301.2 199 80.9
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 1.1e-79 300.4 199 81.4
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.9e-79 299.7 199 79.9
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.9e-79 299.7 200 81.5
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 2.5e-79 299.3 199 79.4
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 2.5e-79 299.3 199 81.4
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 2.5e-79 299.3 199 80.4
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 4.2e-79 298.5 199 80.4
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 5.5e-79 298.1 199 79.9
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 5.5e-79 298.1 199 79.9
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 5.5e-79 298.1 199 79.9
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 5.5e-79 298.1 200 80.0
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 7.1e-79 297.7 199 78.9
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 9.3e-79 297.4 199 78.4
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.6e-78 296.6 199 77.9
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.6e-78 296.6 199 79.9
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.1e-78 296.2 199 77.9
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.5e-78 295.4 199 79.4
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 3.5e-78 295.4 199 80.4
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 3.5e-78 295.4 250 67.6
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 6.0e-78 294.7 199 77.9
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 7.9e-78 294.3 199 77.9
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 7.9e-78 294.3 199 78.4
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 1.0e-77 293.9 199 78.4
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 1.0e-77 293.9 199 78.4
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 1.0e-77 293.9 199 78.4
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.8e-77 293.1 199 76.9
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.3e-77 292.7 199 76.9
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 3.9e-77 292.0 199 76.9
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 5.1e-77 291.6 199 77.4
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.9e-76 289.7 199 79.4
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 3.3e-76 288.9 199 76.4
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 5.7e-76 288.1 199 77.9
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 5.7e-76 288.1 199 77.9
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 7.4e-76 287.7 199 78.4
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 7.4e-76 287.7 199 78.4
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 7.4e-76 287.7 200 79.5
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 7.4e-76 287.7 199 78.4
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 1.3e-75 287.0 199 78.9
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 6.3e-75 284.6 199 77.4
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 6.9e-74 281.2 200 77.0
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 9.0e-74 280.8 200 77.0
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 7.6e-73 277.7 200 75.5
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.6e-70 270.0 200 73.5
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 2.5e-68 262.7 199 70.9
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 2.5e-68 262.7 199 70.9
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 2.5e-68 262.7 199 70.9
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 2.5e-68 262.7 199 70.9
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 2.2e-67 259.6 200 72.5
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 7.7e-65 251.1 160 85.0
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.0e-64 250.8 200 69.0
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 1.1e-63 247.3 199 69.3
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.0e-61 239.2 201 64.2
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 6.3e-59 231.5 200 66.5
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 9.1e-58 227.6 206 58.3
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.3e-56 223.8 179 72.1
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 2.2e-56 223.0 207 58.5
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 3.8e-56 222.2 199 64.3
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.9e-55 219.9 199 63.3
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 2.1e-54 216.5 207 58.9
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 6.7e-53 211.5 141 82.3
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.3e-51 204.9 112 95.5
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.3e-50 201.8 205 55.6
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 1.7e-48 196.8 212 51.4
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.5e-47 191.8 147 74.1
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.1e-46 188.3 115 87.0
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 6.1e-46 188.3 156 71.2
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.0e-45 187.6 199 49.2
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 2.2e-43 179.9 211 47.9
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.1e-39 167.5 209 48.8
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 3.8e-32 142.5 149 50.3
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.2e-29 132.1 199 45.2
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.6e-28 129.8 191 42.4
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.1e-26 124.4 68 94.1
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 1.9e-23 113.6 165 40.6
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.5e-23 113.2 209 39.2
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.6e-22 109.4 123 52.0
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 4.0e-21 105.9 127 55.9
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 5.2e-21 105.5 225 30.2
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 7.0e-18 95.1 141 46.1
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.1e-15 87.8 116 49.1
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 1.9e-10 70.5 69 55.1
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 6.0e-09 65.5 44 68.2
PSO541G6111 Papaver somniferum HOM05D003907 ORTHO05D305003 1.2e-06 57.8 38 76.3


User provided reference genes

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