Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 8.3e-57 223.8 139 100.0
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.2e-44 183.3 140 73.6
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 4.7e-44 181.4 139 73.4
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.7e-41 172.9 137 69.3
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.1e-40 170.2 143 71.3
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.9e-40 169.5 140 70.0
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 4.1e-40 168.3 144 71.5
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.0e-39 166.0 134 71.6
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.7e-39 165.6 139 68.3
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 5.0e-38 161.4 140 67.9
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 6.6e-38 161.0 139 64.7
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 6.6e-38 161.0 139 64.7
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 2.5e-37 159.1 143 69.9
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 5.6e-37 157.9 139 65.5
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 5.6e-37 157.9 137 67.9
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 7.3e-37 157.5 140 67.1
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 7.3e-37 157.5 128 68.8
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 7.3e-37 157.5 139 64.0
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 2.8e-36 155.6 128 68.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.8e-36 155.6 134 66.4
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 6.2e-36 154.5 145 67.6
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 8.1e-36 154.1 134 68.7
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 8.1e-36 154.1 139 68.3
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.1e-35 153.7 139 64.7
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.4e-35 153.3 141 72.3
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.4e-35 153.3 144 72.2
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.3e-35 152.5 140 64.3
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.0e-35 151.8 140 70.0
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.0e-35 151.8 139 64.7
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 5.2e-35 151.4 137 64.2
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 5.2e-35 151.4 137 65.0
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 6.8e-35 151.0 140 71.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 8.9e-35 150.6 140 70.7
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 8.9e-35 150.6 138 71.0
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.2e-34 150.2 139 67.6
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.2e-34 150.2 140 70.0
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.5e-34 149.8 140 70.7
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.6e-34 149.1 140 70.7
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 3.4e-34 148.7 137 64.2
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 3.4e-34 148.7 145 69.0
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 4.4e-34 148.3 139 61.2
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 5.8e-34 147.9 143 75.5
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.8e-34 147.9 140 70.0
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 5.8e-34 147.9 141 61.7
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 9.8e-34 147.1 142 69.0
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 2.9e-33 145.6 141 61.0
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 3.7e-33 145.2 140 63.6
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 4.9e-33 144.8 141 69.5
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 6.4e-33 144.4 141 68.1
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 8.3e-33 144.1 143 60.8
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 2.4e-32 142.5 142 69.7
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.4e-32 142.5 157 56.7
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 5.4e-32 141.4 140 71.4
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 7.1e-32 141.0 137 60.6
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.6e-31 139.8 148 58.1
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.6e-31 139.8 139 61.2
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 2.1e-31 139.4 144 60.4
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.6e-31 138.3 158 61.4
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 6.0e-31 137.9 163 57.7
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 6.0e-31 137.9 141 58.9
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 7.8e-31 137.5 161 57.8
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 1.3e-30 136.7 147 57.1
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 2.3e-30 136.0 142 63.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 3.0e-30 135.6 139 62.6
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 3.9e-30 135.2 145 58.6
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.9e-30 135.2 140 57.9
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 6.6e-30 134.4 144 62.5
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 8.6e-30 134.0 138 57.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.1e-29 133.7 148 64.2
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.1e-29 133.7 134 64.2
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.5e-29 133.3 148 63.5
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.5e-29 133.3 142 67.6
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.5e-29 132.5 142 55.6
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 4.3e-29 131.7 155 64.5
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 5.6e-29 131.3 146 54.8
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 7.3e-29 131.0 128 60.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.2e-28 130.2 152 61.8
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.2e-28 130.2 144 63.9
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 2.8e-28 129.0 142 69.7
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.8e-28 129.0 153 63.4
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.8e-28 129.0 138 55.8
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.8e-28 129.0 138 55.8
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.6e-28 128.6 158 57.6
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.7e-28 128.3 137 65.0
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 8.1e-28 127.5 143 63.6
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 8.1e-28 127.5 163 55.8
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.8e-27 126.3 128 58.6
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.8e-27 126.3 159 57.2
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 3.1e-27 125.6 193 51.8
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.0e-27 125.2 143 62.9
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 5.2e-27 124.8 143 60.1
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.8e-27 124.4 143 59.4
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.6e-26 122.5 149 53.0
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.6e-26 122.5 96 72.9
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 3.4e-26 122.1 148 60.8
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.4e-26 122.1 151 54.3
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.4e-26 121.7 149 54.4
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.2e-25 119.4 143 58.0
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.9e-25 119.0 151 67.5
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 3.7e-25 118.6 149 61.7
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 8.4e-25 117.5 137 47.4
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.4e-24 116.7 160 57.5
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.9e-24 116.3 149 51.7
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.4e-24 115.9 147 55.8
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.2e-24 115.5 152 49.3
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 4.1e-24 115.2 147 50.3
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.2e-23 113.6 151 57.6
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.1e-23 112.8 149 51.7
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.1e-23 112.8 152 65.8
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.5e-23 112.1 151 66.2
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 3.5e-23 112.1 95 70.5
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 4.6e-23 111.7 140 67.9
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 7.8e-23 110.9 141 52.5
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.3e-22 110.2 149 51.0
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.7e-22 109.8 141 50.4
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 5.1e-22 108.2 139 52.5
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.1e-21 107.1 149 55.7
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 3.3e-21 105.5 123 54.5
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.2e-20 103.6 100 65.0
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.6e-20 103.2 150 48.0
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.6e-20 103.2 150 48.0
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.6e-20 103.2 155 49.7
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.1e-20 102.8 151 48.3
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 2.8e-20 102.4 87 69.0
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 2.8e-20 102.4 150 48.0
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.8e-20 102.4 150 48.0
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 5.8e-18 94.7 147 45.6
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 5.8e-18 94.7 147 45.6
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 1.3e-17 93.6 136 50.7
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.9e-17 92.4 156 51.3
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 4.9e-17 91.7 157 45.9
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 8.4e-17 90.9 156 50.6
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 3.2e-16 89.0 75 66.7
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-15 87.0 158 48.7
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.6e-15 86.7 88 69.3
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 2.1e-15 86.3 161 47.2
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.7e-15 85.9 111 45.9
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.3e-14 83.6 97 64.9
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.3e-14 83.6 131 48.1
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 1.7e-14 83.2 162 46.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.3e-14 82.8 140 46.4
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 5.1e-14 81.6 151 42.4
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.9e-13 79.7 123 44.7
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 4.3e-13 78.6 131 42.0
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.1e-12 76.3 152 41.4
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 2.1e-12 76.3 163 37.4
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 3.6e-12 75.5 87 50.6
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 4.8e-12 75.1 101 60.4
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.4e-11 73.6 99 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.5e-10 70.1 77 51.9
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 2.2e-09 66.2 161 40.4
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 7.1e-08 61.2 72 68.1
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-06 57.0 50 64.0
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-06 57.0 50 64.0


User provided reference genes

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