Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040970 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 3.1e-111 405.2 212 100.0
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 4.0e-103 378.3 199 99.5
CSS0015206 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 4.1e-63 245.4 201 66.7
CSS0036421 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.6e-62 242.7 201 65.2
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 1.8e-50 203.4 210 61.0
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 2.5e-49 199.5 204 57.8
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 6.3e-48 194.9 201 57.7
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 1.4e-47 193.7 204 57.4
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 4.1e-39 165.6 145 65.5
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 1.6e-35 153.7 199 54.8
RhsimUnG0135700 Rhododendron simsii HOM05D005405 ORTHO05D006333 3.6e-35 152.5 172 55.8
RhsimUnG0181000 Rhododendron simsii HOM05D005405 ORTHO05D006333 3.6e-35 152.5 172 55.8
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 2.3e-34 149.8 197 47.2
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 8.8e-34 147.9 183 50.3
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 7.5e-33 144.8 168 52.4
Rhsim02G0140000 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.3e-32 144.1 172 55.8
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 3.7e-32 142.5 207 46.4
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 3.7e-32 142.5 208 46.6
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 1.4e-31 140.6 199 43.7
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 7.7e-30 134.8 182 48.9
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 3.8e-29 132.5 172 45.9
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 8.5e-29 131.3 187 45.5
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 1.5e-28 130.6 181 47.5
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 1.5e-28 130.6 177 49.7
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 1.0e-26 124.4 192 46.4
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 2.0e-25 120.2 195 42.6
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 5.7e-25 118.6 133 51.1
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 2.2e-24 116.7 187 44.9
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 4.8e-24 115.5 200 41.5
PGSC0003DMG400029647 Solanum tuberosum HOM05D005405 ORTHO05D006333 6.3e-24 115.2 188 44.1
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 8.3e-24 114.8 183 44.3
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 3.1e-23 112.8 188 44.1
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 3.1e-23 112.8 191 40.3
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 5.4e-23 112.1 182 42.3
Ciclev10004706m.g Citrus clementina HOM05D005405 ORTHO05D006333 9.1e-23 111.3 156 49.4
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 9.1e-23 111.3 158 50.0
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 1.2e-22 110.9 197 41.1
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 1.6e-22 110.5 161 45.3
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.6e-22 110.5 161 45.3
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 2.0e-22 110.2 157 49.0
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 5.9e-22 108.6 182 44.5
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 1.7e-21 107.1 199 40.2
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 2.2e-21 106.7 194 41.8
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 3.8e-21 105.9 183 43.2
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 6.5e-21 105.1 172 41.9
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 8.5e-21 104.8 164 48.8
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 4.2e-20 102.4 156 46.8
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 4.2e-20 102.4 171 44.4
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 1.2e-19 100.9 189 40.2
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 1.6e-19 100.5 186 40.3
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 2.1e-19 100.1 156 46.2
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 2.1e-19 100.1 137 45.3
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 2.7e-19 99.8 170 41.8
GSVIVG01029064001 Vitis vinifera HOM05D005405 ORTHO05D006333 1.0e-18 97.8 88 61.4
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 5.2e-18 95.5 133 46.6
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.5e-17 94.0 190 41.6
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 1.5e-17 94.0 175 41.1
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 4.4e-17 92.4 190 41.1
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 9.8e-17 91.3 155 45.2
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 2.8e-16 89.7 144 41.7
SGA_v2.0_scaffold2G00820 Striga asiatica HOM05D005405 ORTHO05D006333 3.7e-16 89.4 177 39.0
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.4e-15 87.4 135 45.2
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.4e-15 87.4 135 45.2
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 5.4e-15 85.5 202 38.6
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 7.0e-15 85.1 183 39.9
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 7.0e-15 85.1 188 39.9
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-14 84.3 207 37.2
Lj3C583T4 Lonicera japonica HOM05D005405 ORTHO05D006333 2.0e-14 83.6 181 37.6
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 2.0e-14 83.6 118 44.9
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 4.5e-14 82.4 122 46.7
Gohir.D09G196500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 5.9e-14 82.0 185 39.5
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 7.7e-14 81.6 157 43.3
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.3e-13 80.9 184 39.7
Gorai.006G220000 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.7e-13 80.5 185 38.9
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 3.8e-13 79.3 203 38.9
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 3.8e-13 79.3 193 34.7
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 1.5e-12 77.4 191 34.6
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 3.3e-12 76.3 191 34.0
Aa31LG1G20100 Aethionema arabicum HOM05D005405 ORTHO05D006333 5.6e-12 75.5 116 40.5
CARHR004180 Cardamine hirsuta HOM05D005405 ORTHO05D006333 2.1e-11 73.6 177 35.0
THA.LOC104801040 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 2.1e-11 73.6 133 39.8
AL1G14510 Arabidopsis lyrata HOM05D005405 ORTHO05D006333 2.8e-11 73.2 137 38.0
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 3.6e-11 72.8 129 45.7
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 4.7e-11 72.4 132 37.9
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 4.7e-11 72.4 134 38.1
Carub.0001s0404 Capsella rubella HOM05D005405 ORTHO05D006333 6.1e-11 72.0 188 32.4
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 1.8e-10 70.5 148 37.2
Gohir.A10G121500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 4.0e-10 69.3 154 39.6
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 5.2e-10 68.9 141 37.6
Os04g0511600 Oryza sativa ssp. japonica HOM05D005405 ORTHO05D006333 8.9e-10 68.2 131 42.0
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 1.2e-09 67.8 172 35.5
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 1.5e-09 67.4 160 36.9
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 2.6e-09 66.6 139 38.1
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 4.4e-09 65.9 178 35.4
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 7.5e-09 65.1 72 52.8
Hund05655 Selenicereus undatus HOM05D005405 ORTHO05D006333 1.3e-08 64.3 136 37.5
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 2.2e-08 63.5 154 37.0
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 2.9e-08 63.2 192 35.9
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 2.9e-08 63.2 144 39.6
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 4.9e-08 62.4 157 35.0
BcaB02g06900 Brassica carinata HOM05D005405 ORTHO05D006333 8.3e-08 61.6 116 37.1
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 1.6e-06 57.4 140 32.1
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 1.6e-06 57.4 156 32.7
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 3.5e-06 56.2 137 32.1
C05p02970 Brassica napus HOM05D005405 ORTHO05D006333 3.5e-06 56.2 137 32.1
BolC5t29078H Brassica oleracea HOM05D005405 ORTHO05D006333 3.5e-06 56.2 137 32.1
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 4.6e-06 55.8 138 35.5
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 5.9e-06 55.5 215 29.8
CDE02G0141 Ceratophyllum demersum HOM05D005405 ORTHO05D130198 7.8e-06 55.1 89 39.3


User provided reference genes

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