Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040958 Camellia sinensis var. sinensis HOM05D003491 ORTHO05D004293 1.4e-61 239.6 131 100.0
CSS0016532 Camellia sinensis var. sinensis HOM05D003491 ORTHO05D004293 1.8e-45 186.0 167 69.5
CSS0031636 Camellia sinensis var. sinensis HOM05D003491 ORTHO05D004293 3.1e-45 185.3 167 69.5
Dinv11598 Davidia involucrata HOM05D003491 ORTHO05D004293 5.8e-44 181.0 164 68.3
ECA233G0626 Erigeron canadensis HOM05D003491 ORTHO05D004293 5.8e-44 181.0 164 67.7
Gohir.D03G064500 Gossypium hirsutum HOM05D003491 ORTHO05D004293 5.8e-44 181.0 167 67.7
Gorai.013G110300 Gossypium raimondii HOM05D003491 ORTHO05D004293 5.8e-44 181.0 167 67.7
Rhsim02G0193000 Rhododendron simsii HOM05D003491 ORTHO05D004293 9.9e-44 180.3 164 66.5
vmacro12625 Vaccinium macrocarpon HOM05D003491 ORTHO05D004293 9.9e-44 180.3 163 68.1
Gohir.A02G109706 Gossypium hirsutum HOM05D003491 ORTHO05D004293 1.3e-43 179.9 167 67.1
Actinidia13267 Actinidia chinensis HOM05D003491 ORTHO05D004293 1.7e-43 179.5 167 66.5
Lj5A66T58 Lonicera japonica HOM05D003491 ORTHO05D004293 1.7e-43 179.5 167 67.1
Nitab4.5_0000508g0240 Nicotiana tabacum HOM05D003491 ORTHO05D004293 1.7e-43 179.5 165 67.3
Nitab4.5_0002339g0040 Nicotiana tabacum HOM05D003491 ORTHO05D004293 1.7e-43 179.5 165 67.3
Peaxi162Scf00207g00754 Petunia axillaris HOM05D003491 ORTHO05D004293 1.7e-43 179.5 165 66.1
Actinidia15699 Actinidia chinensis HOM05D003491 ORTHO05D004293 2.2e-43 179.1 165 67.3
Cpa.g.sc91.29 Carica papaya HOM05D003491 ORTHO05D004293 2.2e-43 179.1 167 66.5
Gohir.A08G091800 Gossypium hirsutum HOM05D003491 ORTHO05D004293 2.2e-43 179.1 167 67.1
Gohir.D08G107100 Gossypium hirsutum HOM05D003491 ORTHO05D004293 2.2e-43 179.1 167 67.1
Gorai.004G114500 Gossypium raimondii HOM05D003491 ORTHO05D004293 2.2e-43 179.1 167 67.1
Lsat_1_v5_gn_6_21641 Lactuca sativa HOM05D003491 ORTHO05D004293 2.2e-43 179.1 164 66.5
Cfa013196 Carpinus fangiana HOM05D003491 ORTHO05D004293 3.8e-43 178.3 165 66.1
Haze_21598 Corylus avellana HOM05D003491 ORTHO05D004293 3.8e-43 178.3 165 66.1
Potri.006G248700 Populus trichocarpa HOM05D003491 ORTHO05D004293 3.8e-43 178.3 167 65.9
QL07p015653 Quercus lobata HOM05D003491 ORTHO05D004293 3.8e-43 178.3 165 66.1
TAR383G0278 Trochodendron aralioides HOM05D003491 ORTHO05D004293 3.8e-43 178.3 166 66.3
COL.COLO4_24008 Corchorus olitorius HOM05D003491 ORTHO05D004293 4.9e-43 177.9 167 66.5
TAR626G1382 Trochodendron aralioides HOM05D003491 ORTHO05D004293 4.9e-43 177.9 164 66.5
DCAR_006243 Daucus carota HOM05D003491 ORTHO05D004293 6.4e-43 177.6 164 67.1
HanXRQChr02g0050661 Helianthus annuus HOM05D003491 ORTHO05D004293 6.4e-43 177.6 164 66.5
Lj5g0005859 Lotus japonicus HOM05D003491 ORTHO05D004293 6.4e-43 177.6 164 65.9
Thecc.09G147300 Theobroma cacao HOM05D003491 ORTHO05D004293 6.4e-43 177.6 167 66.5
CAN.G395.36 Capsicum annuum HOM05D003491 ORTHO05D004293 8.4e-43 177.2 167 65.9
FvH4_2g29800 Fragaria vesca HOM05D003491 ORTHO05D004293 8.4e-43 177.2 164 67.1
Nitab4.5_0000620g0180 Nicotiana tabacum HOM05D003491 ORTHO05D004293 8.4e-43 177.2 167 65.9
RcHm_v2.0_Chr6g0298821 Rosa chinensis HOM05D003491 ORTHO05D004293 8.4e-43 177.2 164 66.5
PGSC0003DMG400007564 Solanum tuberosum HOM05D003491 ORTHO05D004293 8.4e-43 177.2 167 65.9
PGSC0003DMG400028549 Solanum tuberosum HOM05D003491 ORTHO05D004293 8.4e-43 177.2 167 65.9
SGA_v2.0_scaffold37G14799 Striga asiatica HOM05D003491 ORTHO05D004293 8.4e-43 177.2 155 68.4
CANSAT54G2758 Cannabis sativa HOM05D003491 ORTHO05D004293 1.1e-42 176.8 165 66.1
Lj9A504T65 Lonicera japonica HOM05D003491 ORTHO05D004293 1.1e-42 176.8 165 66.1
MBI04_g33817_MAGBIO Magnolia biondii HOM05D003491 ORTHO05D004293 1.1e-42 176.8 165 65.5
Nitab4.5_0009276g0010 Nicotiana tabacum HOM05D003491 ORTHO05D004293 1.1e-42 176.8 167 65.9
PGR044G2143 Punica granatum HOM05D003491 ORTHO05D004293 1.1e-42 176.8 167 65.3
MSTRG.11107 Avicennia marina HOM05D003491 ORTHO05D004293 1.4e-42 176.4 164 65.9
MSTRG.22716 Avicennia marina HOM05D003491 ORTHO05D004293 1.4e-42 176.4 164 65.9
CiPaw.07G219300 Carya illinoinensis HOM05D003491 ORTHO05D004293 1.4e-42 176.4 167 65.9
Cc04_g03810 Coffea canephora HOM05D003491 ORTHO05D004293 1.4e-42 176.4 167 65.3
Duzib150G0462 Durio zibethinus HOM05D003491 ORTHO05D004293 1.4e-42 176.4 167 65.9
MD08G1141700 Malus domestica HOM05D003491 ORTHO05D004293 1.4e-42 176.4 164 65.9
Manes.03G018400 Manihot esculenta HOM05D003491 ORTHO05D004293 1.4e-42 176.4 167 65.9
Manes.16G118100 Manihot esculenta HOM05D003491 ORTHO05D004293 1.4e-42 176.4 167 65.9
PSO339G4791 Papaver somniferum HOM05D003491 ORTHO05D004293 1.4e-42 176.4 164 66.5
PSO801G0434 Papaver somniferum HOM05D003491 ORTHO05D004293 1.4e-42 176.4 164 66.5
Rhsim07G0146800 Rhododendron simsii HOM05D003491 ORTHO05D004293 1.4e-42 176.4 162 67.9
Sopen06g025160 Solanum pennellii HOM05D003491 ORTHO05D004293 1.4e-42 176.4 167 65.3
CiPaw.08G014200 Carya illinoinensis HOM05D003491 ORTHO05D004293 1.9e-42 176.0 167 65.3
unitig_21.g20349 Utricularia gibba HOM05D003491 ORTHO05D004293 1.9e-42 176.0 165 64.2
Zm00001eb161810 Zea mays HOM05D003491 ORTHO05D004293 1.9e-42 176.0 165 64.2
Zm00001eb357970 Zea mays HOM05D003491 ORTHO05D004293 1.9e-42 176.0 165 64.2
Hma1.2p1_0007F.1_g005180 Hydrangea macrophylla HOM05D003491 ORTHO05D004293 2.4e-42 175.6 165 64.8
Solyc06g067880.3 Solanum lycopersicum HOM05D003491 ORTHO05D004293 2.4e-42 175.6 167 65.3
CAN.G211.2 Capsicum annuum HOM05D003491 ORTHO05D004293 3.2e-42 175.3 167 65.9
Eucgr.C02831 Eucalyptus grandis HOM05D003491 ORTHO05D004293 3.2e-42 175.3 167 64.1
HanXRQChr13g0402461 Helianthus annuus HOM05D003491 ORTHO05D004293 3.2e-42 175.3 164 65.2
Hma1.2p1_0000F.1_g001030 Hydrangea macrophylla HOM05D003491 ORTHO05D004293 3.2e-42 175.3 165 64.8
Prupe.1G471600 Prunus persica HOM05D003491 ORTHO05D004293 3.2e-42 175.3 164 65.2
SalBow2G1989 Salvia bowleyana HOM05D003491 ORTHO05D004293 3.2e-42 175.3 164 65.9
Sed0016723 Sechium edule HOM05D003491 ORTHO05D004293 3.2e-42 175.3 165 65.5
TAR636G0216 Trochodendron aralioides HOM05D003491 ORTHO05D004293 3.2e-42 175.3 167 65.9
MSTRG.9444 Avicennia marina HOM05D003491 ORTHO05D004293 4.2e-42 174.9 164 64.6
Ciclev10009643m.g Citrus clementina HOM05D003491 ORTHO05D004293 4.2e-42 174.9 167 65.3
Duzib168G0366 Durio zibethinus HOM05D003491 ORTHO05D004293 4.2e-42 174.9 167 65.9
Potri.018G032600 Populus trichocarpa HOM05D003491 ORTHO05D004293 4.2e-42 174.9 164 65.9
Ah.12g063740 Amaranthus hybridus HOM05D003491 ORTHO05D004293 5.4e-42 174.5 167 64.1
Hund25698 Selenicereus undatus HOM05D003491 ORTHO05D004293 5.4e-42 174.5 164 64.6
GSVIVG01035775001 Vitis vinifera HOM05D003491 ORTHO05D004293 5.4e-42 174.5 167 65.3
Medtr7g090330 Medicago truncatula HOM05D003491 ORTHO05D004293 7.1e-42 174.1 164 64.6
Sed0008081 Sechium edule HOM05D003491 ORTHO05D004293 7.1e-42 174.1 167 64.7
Atru.chr7.2353 Acer truncatum HOM05D003491 ORTHO05D004293 9.3e-42 173.7 167 64.7
Migut.I00813 Erythranthe guttata HOM05D003491 ORTHO05D004293 9.3e-42 173.7 164 64.0
MD15G1118200 Malus domestica HOM05D003491 ORTHO05D004293 1.2e-41 173.3 164 64.6
PGSC0003DMG400025542 Solanum tuberosum HOM05D003491 ORTHO05D004293 1.2e-41 173.3 167 65.3
GSVIVG01017212001 Vitis vinifera HOM05D003491 ORTHO05D004293 1.2e-41 173.3 162 66.7
Psat6g030160 Pisum sativum HOM05D003491 ORTHO05D004293 1.6e-41 172.9 164 64.0
TPR.G15667 Trifolium pratense HOM05D003491 ORTHO05D004293 1.6e-41 172.9 164 64.0
Sc23g0006960 Simmondsia chinensis HOM05D003491 ORTHO05D004293 2.1e-41 172.6 167 64.1
TWI63G0930 Tripterygium wilfordii HOM05D003491 ORTHO05D004293 2.1e-41 172.6 165 64.2
ECA232G3542 Erigeron canadensis HOM05D003491 ORTHO05D004293 2.7e-41 172.2 164 64.6
Peaxi162Scf00251g01120 Petunia axillaris HOM05D003491 ORTHO05D004293 2.7e-41 172.2 167 65.3
Solyc08g067480.4 Solanum lycopersicum HOM05D003491 ORTHO05D004293 2.7e-41 172.2 167 64.7
Sopen08g021420 Solanum pennellii HOM05D003491 ORTHO05D004293 2.7e-41 172.2 167 64.7
AUR62032356 Chenopodium quinoa HOM05D003491 ORTHO05D004293 3.5e-41 171.8 162 65.4
Sed0021950 Sechium edule HOM05D003491 ORTHO05D004293 3.5e-41 171.8 165 64.8
ClCG08G013010 Citrullus lanatus HOM05D003491 ORTHO05D004293 6.0e-41 171.0 164 65.2
CsaV3_2G031740 Cucumis sativus L. HOM05D003491 ORTHO05D004293 6.0e-41 171.0 164 65.2
CsaV3_3G046610 Cucumis sativus L. HOM05D003491 ORTHO05D004293 6.0e-41 171.0 167 64.1
Nn1g04228 Nelumbo nucifera HOM05D003491 ORTHO05D004293 6.0e-41 171.0 167 64.1
TWI34G0357 Tripterygium wilfordii HOM05D003491 ORTHO05D004293 6.0e-41 171.0 162 65.4
VMungo0647G2507 Vigna mungo HOM05D003491 ORTHO05D004293 6.0e-41 171.0 164 63.4
Ca_12922_v3 Cicer arietinum L. HOM05D003491 ORTHO05D004293 7.8e-41 170.6 164 63.4
MELO3C011225.2 Cucumis melo HOM05D003491 ORTHO05D004293 7.8e-41 170.6 164 65.2
Glyma.14G127600 Glycine max HOM05D003491 ORTHO05D004293 7.8e-41 170.6 164 64.0
Glyma.17G206600 Glycine max HOM05D003491 ORTHO05D004293 7.8e-41 170.6 164 64.0
HanXRQChr03g0081341 Helianthus annuus HOM05D003491 ORTHO05D004293 7.8e-41 170.6 162 65.4
Phvul.001G054000 Phaseolus vulgaris HOM05D003491 ORTHO05D004293 7.8e-41 170.6 164 63.4
Os01g0610100 Oryza sativa ssp. japonica HOM05D003491 ORTHO05D004293 1.0e-40 170.2 165 62.4
Lsat_1_v5_gn_4_104721 Lactuca sativa HOM05D003491 ORTHO05D004293 1.3e-40 169.9 162 64.8
Aqoxy7G01963 Aquilegia oxysepala HOM05D003491 ORTHO05D004293 2.3e-40 169.1 165 63.6
C01p06490 Brassica napus HOM05D003491 ORTHO05D004293 2.3e-40 169.1 164 63.4
BolC1t00643H Brassica oleracea HOM05D003491 ORTHO05D004293 2.3e-40 169.1 164 63.4
AL4G17080 Arabidopsis lyrata HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
AL7G19280 Arabidopsis lyrata HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
AT2G25610 Arabidopsis thaliana HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
AT4G32530 Arabidopsis thaliana HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
BcaB03g12749 Brassica carinata HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
BcaC01g01019 Brassica carinata HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
BcaC09g52042 Brassica carinata HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
A01p05870 Brassica napus HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
A08p18150 Brassica napus HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
C03p87310 Brassica napus HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
BolC3t21031H Brassica oleracea HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
Carub.0004s0534 Capsella rubella HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
Carub.0007s0805 Capsella rubella HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
CARHR240460 Cardamine hirsuta HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
Thhalv10026373m.g Eutrema salsugineum HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
Sp4g05100 Schrenkiella parvula HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
Sp7g30300 Schrenkiella parvula HOM05D003491 ORTHO05D004293 3.0e-40 168.7 164 63.4
Aa31LG10G10670 Aethionema arabicum HOM05D003491 ORTHO05D004293 3.9e-40 168.3 164 63.4
Lalb_Chr14g0361951 Lupinus albus HOM05D003491 ORTHO05D004293 3.9e-40 168.3 164 64.0
Sabra06G0194600 Salix brachista HOM05D003491 ORTHO05D004293 3.9e-40 168.3 162 63.6
THA.LOC104803630 Tarenaya hassleriana HOM05D003491 ORTHO05D004293 3.9e-40 168.3 165 64.2
Thhalv10000341m.g Eutrema salsugineum HOM05D003491 ORTHO05D004293 1.1e-39 166.8 164 62.8
THA.LOC104803825 Tarenaya hassleriana HOM05D003491 ORTHO05D004293 1.1e-39 166.8 164 63.4
BcaNung04516 Brassica carinata HOM05D003491 ORTHO05D004293 1.5e-39 166.4 164 62.8
Oeu052308.2 Olea europaea HOM05D003491 ORTHO05D004293 1.9e-39 166.0 182 57.7
arahy.Tifrunner.gnm1.ann1.ED147J Arachis hypogaea HOM05D003491 ORTHO05D004293 3.3e-39 165.2 164 62.8
arahy.Tifrunner.gnm1.ann1.IM4PDC Arachis hypogaea HOM05D003491 ORTHO05D004293 3.3e-39 165.2 164 62.8
arahy.Tifrunner.gnm1.ann1.MW4ZUP Arachis hypogaea HOM05D003491 ORTHO05D004293 4.3e-39 164.9 164 62.8
AUR62041851 Chenopodium quinoa HOM05D003491 ORTHO05D004293 8.1e-38 160.6 193 54.9
BraA08t33768Z Brassica rapa HOM05D003491 ORTHO05D004293 1.1e-37 160.2 187 55.6
Mapoly0016s0012 Marchantia polymorpha HOM05D003491 ORTHO05D004293 1.1e-37 160.2 162 62.3
ATR0083G021 Amborella trichopoda HOM05D003491 ORTHO05D004293 5.3e-37 157.9 165 60.0
BraA01t00554Z Brassica rapa HOM05D003491 ORTHO05D004293 5.3e-37 157.9 193 53.9
CDE02G0717 Ceratophyllum demersum HOM05D003491 ORTHO05D004293 2.0e-36 156.0 151 64.9
SEGI_03101 Sequoiadendron giganteum HOM05D003491 ORTHO05D004293 9.9e-36 153.7 161 59.6
Pp3c4_7470 Physcomitrium patens HOM05D003491 ORTHO05D004293 3.8e-35 151.8 162 59.3
SGA_v2.0_scaffold5G02647 Striga asiatica HOM05D003491 ORTHO05D004293 4.9e-35 151.4 211 50.2
TWI32G0730 Tripterygium wilfordii HOM05D003491 ORTHO05D004293 8.4e-35 150.6 150 62.7
Pp3c12_23580 Physcomitrium patens HOM05D003491 ORTHO05D004293 3.2e-34 148.7 162 58.0
HPP92_003644 Vanilla planifolia HOM05D003491 ORTHO05D004293 3.2e-34 148.7 150 62.7
Pp3c3_36670 Physcomitrium patens HOM05D003491 ORTHO05D004293 9.3e-34 147.1 162 57.4
Pp3c8_3370 Physcomitrium patens HOM05D003491 ORTHO05D004293 9.3e-34 147.1 162 56.8
HPP92_003632 Vanilla planifolia HOM05D003491 ORTHO05D004293 1.7e-32 142.9 155 60.6
CBR_g48556 Chara braunii HOM05D003491 ORTHO05D004293 2.3e-32 142.5 163 55.8
Actinidia14629 Actinidia chinensis HOM05D003491 ORTHO05D004293 1.5e-31 139.8 122 70.5
MELO3C003677.2 Cucumis melo HOM05D003491 ORTHO05D004293 3.3e-31 138.7 148 60.8
Dinv30193 Davidia involucrata HOM05D004398 ORTHO05D004293 7.4e-31 137.5 122 69.7
FAN15G2480 Fragaria x ananassa HOM05D003491 ORTHO05D004293 2.1e-30 136.0 102 78.4
FAN24G1679 Fragaria x ananassa HOM05D003491 ORTHO05D004293 2.1e-30 136.0 102 78.4
FAN27G2386 Fragaria x ananassa HOM05D003491 ORTHO05D004293 2.1e-30 136.0 102 78.4
Nn8g39341 Nelumbo nucifera HOM05D003491 ORTHO05D004293 2.1e-30 136.0 122 68.0
SalBow2G0098 Salvia bowleyana HOM05D000011 ORTHO05D000018 4.8e-30 134.8 125 67.2
SMO117G0315 Selaginella moellendorffii HOM05D003491 ORTHO05D004293 1.1e-29 133.7 162 55.6
CDE01G0121 Ceratophyllum demersum HOM05D003491 ORTHO05D004293 1.2e-28 130.2 101 73.3
vmacro11129 Vaccinium macrocarpon HOM05D003491 ORTHO05D004293 2.0e-28 129.4 111 65.8
ClCG05G017160 Citrullus lanatus HOM05D003491 ORTHO05D004293 3.8e-27 125.2 187 48.1
BraA03t15192Z Brassica rapa HOM05D003491 ORTHO05D004293 8.4e-27 124.0 113 65.5
Cre12.g529100 Chlamydomonas reinhardtii HOM05D003491 ORTHO05D004293 1.1e-26 123.6 159 50.9
arahy.Tifrunner.gnm1.ann1.VD8BDW Arachis hypogaea HOM05D003491 ORTHO05D004293 1.2e-25 120.2 112 65.2
AagrBONN_evm.TU.Sc2ySwM_344.4191 Anthoceros agrestis HOM05D003491 ORTHO05D004293 3.5e-25 118.6 144 52.1
Oeu022415.1 Olea europaea HOM05D003491 ORTHO05D004293 2.3e-24 115.9 178 48.3
A03p61470 Brassica napus HOM05D003491 ORTHO05D004293 3.9e-24 115.2 136 54.4
PRCOL_00000662 Prasinoderma coloniale HOM05D003491 ORTHO05D004293 2.5e-23 112.5 157 49.7
MCO05G406 Micromonas commoda HOM05D003491 ORTHO05D004293 2.1e-22 109.4 155 49.7
EL10As1g23116 Beta vulgaris HOM05D003491 ORTHO05D004293 1.3e-19 100.1 100 60.0
Haze_27614 Corylus avellana HOM05D003491 ORTHO05D004293 5.1e-16 88.2 165 33.9
EL10Ac2g02561 Beta vulgaris HOM05D003491 ORTHO05D004293 1.6e-14 83.2 138 47.8
GSVIVG01036835001 Vitis vinifera HOM05D003491 ORTHO05D440072 1.6e-14 83.2 68 72.1
GSVIVG01014559001 Vitis vinifera HOM05D003491 ORTHO05D438634 8.2e-14 80.9 79 59.5
Lalb_Chr24g0402271 Lupinus albus HOM05D003491 ORTHO05D239104 2.5e-10 69.3 72 62.5
Lalb_Chr24g0402261 Lupinus albus HOM05D003491 ORTHO05D036541 8.7e-08 60.8 34 88.2
C07p59250 Brassica napus HOM05D003491 ORTHO05D004293 1.1e-07 60.5 34 88.2
Sabra18G0033300 Salix brachista HOM05D003491 ORTHO05D349818 1.5e-07 60.1 72 55.6
DCAR_003045 Daucus carota HOM05D003491 ORTHO05D004293 8.2e-06 54.3 54 61.1


User provided reference genes

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