Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040953 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.7e-57 225.7 110 100.0
CSS0006022 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.5e-53 212.6 125 86.4
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.4e-19 99.8 80 65.0
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 2.4e-19 99.0 127 46.5
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.1e-19 98.2 80 63.8
Zm00001eb016890 Zea mays HOM05D003336 ORTHO05D003807 5.4e-19 97.8 127 48.0
Zm00001eb059340 Zea mays HOM05D003336 ORTHO05D003807 5.4e-19 97.8 127 48.0
Zm00001eb121330 Zea mays HOM05D003336 ORTHO05D003807 5.4e-19 97.8 127 48.0
Zm00001eb324020 Zea mays HOM05D003336 ORTHO05D003807 5.4e-19 97.8 127 48.0
Zm00001eb398700 Zea mays HOM05D003336 ORTHO05D003807 5.4e-19 97.8 127 48.0
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 7.1e-19 97.4 80 63.8
Zm00001eb007550 Zea mays HOM05D003336 ORTHO05D003807 7.1e-19 97.4 127 48.0
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 9.2e-19 97.1 88 60.2
Zm00001eb376450 Zea mays HOM05D003336 ORTHO05D003807 9.2e-19 97.1 127 47.2
Zm00001eb336440 Zea mays HOM05D003336 ORTHO05D003807 1.2e-18 96.7 117 49.6
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.6e-18 96.3 80 63.8
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.6e-18 96.3 80 63.8
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 2.7e-18 95.5 102 53.9
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 3.5e-18 95.1 97 53.6
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 3.5e-18 95.1 80 62.5
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 3.5e-18 95.1 80 62.5
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 3.5e-18 95.1 88 60.2
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 3.5e-18 95.1 88 59.1
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 3.5e-18 95.1 80 62.5
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 3.5e-18 95.1 80 62.5
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 3.5e-18 95.1 80 62.5
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 4.6e-18 94.7 88 59.1
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 4.6e-18 94.7 88 59.1
Eucgr.L00050 Eucalyptus grandis HOM05D003336 ORTHO05D003807 4.6e-18 94.7 88 59.1
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 4.6e-18 94.7 80 61.2
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 4.6e-18 94.7 88 58.0
GSVIVG01006062001 Vitis vinifera HOM05D003336 ORTHO05D003807 4.6e-18 94.7 88 59.1
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 6.0e-18 94.4 80 62.5
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 6.0e-18 94.4 102 53.9
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 6.0e-18 94.4 80 62.5
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 7.8e-18 94.0 80 62.5
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 7.8e-18 94.0 88 59.1
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 7.8e-18 94.0 88 59.1
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 7.8e-18 94.0 110 50.9
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 7.8e-18 94.0 80 61.2
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 1.3e-17 93.2 80 61.2
Cc04_g08950 Coffea canephora HOM05D003336 ORTHO05D003807 1.3e-17 93.2 80 62.5
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 1.7e-17 92.8 80 61.2
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 60.0
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 2.3e-17 92.4 88 58.0
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 2.3e-17 92.4 88 58.0
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 60.0
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 60.0
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 60.0
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 60.0
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 60.0
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 60.0
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 2.3e-17 92.4 88 58.0
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 2.3e-17 92.4 88 58.0
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 61.2
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 60.0
TAR365G0105 Trochodendron aralioides HOM05D003336 ORTHO05D003807 2.3e-17 92.4 80 60.0
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.0e-17 92.0 80 60.0
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 3.9e-17 91.7 80 58.8
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 3.9e-17 91.7 80 57.5
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 3.9e-17 91.7 80 57.5
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 3.9e-17 91.7 80 58.8
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 3.9e-17 91.7 80 58.8
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 3.9e-17 91.7 80 61.2
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 5.1e-17 91.3 88 56.8
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 5.1e-17 91.3 88 58.0
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 6.6e-17 90.9 88 56.8
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 6.6e-17 90.9 88 58.0
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 6.6e-17 90.9 80 58.8
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 6.6e-17 90.9 88 56.8
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 6.6e-17 90.9 80 58.8
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 6.6e-17 90.9 88 56.8
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 8.7e-17 90.5 88 55.7
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 8.7e-17 90.5 80 57.5
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 8.7e-17 90.5 80 57.5
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 8.7e-17 90.5 80 57.5
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 8.7e-17 90.5 80 58.8
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 8.7e-17 90.5 80 56.2
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 8.7e-17 90.5 88 56.8
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 8.7e-17 90.5 80 58.8
C01p17150 Brassica napus HOM05D003336 ORTHO05D003807 1.1e-16 90.1 80 57.5
BolC1t01652H Brassica oleracea HOM05D003336 ORTHO05D003807 1.1e-16 90.1 80 57.5
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 1.1e-16 90.1 88 56.8
BcaC09g51089 Brassica carinata HOM05D003336 ORTHO05D003807 1.5e-16 89.7 80 57.5
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 1.5e-16 89.7 80 56.2
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 1.5e-16 89.7 80 56.2
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-16 89.7 80 58.8
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 1.5e-16 89.7 88 55.7
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 1.9e-16 89.4 80 56.2
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 1.9e-16 89.4 80 56.2
CSS0042404 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.9e-16 89.4 52 80.8
CSS0043766 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.9e-16 89.4 52 80.8
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 1.9e-16 89.4 80 58.8
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.5e-16 89.0 91 52.7
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 3.3e-16 88.6 88 55.7
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.3e-16 88.6 80 58.8
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.3e-16 88.6 80 58.8
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 3.3e-16 88.6 80 57.5
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 3.3e-16 88.6 80 57.5
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 3.3e-16 88.6 88 54.5
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 3.3e-16 88.6 80 55.0
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 4.3e-16 88.2 80 57.5
SEGI_39923 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 4.3e-16 88.2 80 56.2
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 5.6e-16 87.8 80 57.5
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 5.6e-16 87.8 80 57.5
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 5.6e-16 87.8 80 57.5
C01p17060 Brassica napus HOM05D003336 ORTHO05D003807 5.6e-16 87.8 80 55.0
C01p17090 Brassica napus HOM05D003336 ORTHO05D003807 5.6e-16 87.8 80 55.0
BolC1t01648H Brassica oleracea HOM05D003336 ORTHO05D003807 5.6e-16 87.8 80 55.0
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 7.3e-16 87.4 88 54.5
C01p17110 Brassica napus HOM05D003336 ORTHO05D003807 7.3e-16 87.4 80 55.0
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 7.3e-16 87.4 80 56.2
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 9.6e-16 87.0 80 57.5
QL10p049056 Quercus lobata HOM05D003336 ORTHO05D003807 2.1e-15 85.9 88 54.5
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 2.1e-15 85.9 80 57.5
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 2.8e-15 85.5 80 56.2
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 2.8e-15 85.5 80 56.2
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 2.8e-15 85.5 80 56.2
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 3.6e-15 85.1 80 56.2
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 4.7e-15 84.7 80 56.2
CSS0012442 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.2e-15 84.3 66 68.2
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 6.2e-15 84.3 80 55.0
CSS0001398 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.4e-14 82.4 80 57.5
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 2.4e-14 82.4 80 52.5
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 3.1e-14 82.0 80 56.2
C01p17130 Brassica napus HOM05D003336 ORTHO05D003807 3.1e-14 82.0 80 53.8
BolC1t01651H Brassica oleracea HOM05D003336 ORTHO05D003807 3.1e-14 82.0 80 53.8
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 5.2e-14 81.3 80 56.2
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 5.2e-14 81.3 80 52.5
Zm00001eb442100 Zea mays HOM05D003336 ORTHO05D003807 5.8e-13 77.8 112 46.4
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 7.6e-13 77.4 76 55.3
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 2.2e-12 75.9 80 50.0
BolC1t01646H Brassica oleracea HOM05D003336 ORTHO05D003807 8.4e-12 73.9 72 52.8
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 4.2e-11 71.6 80 48.8
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 1.3e-09 66.6 80 42.5
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.6e-09 64.3 66 54.5
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.1e-08 63.5 64 53.1
FAN13G1004 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.3e-07 60.1 64 51.6
Zm00001eb191860 Zea mays HOM05D003336 ORTHO05D003807 5.3e-06 54.7 57 52.6


User provided reference genes

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