Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 5.1e-38 160.6 82 100.0
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.1e-29 132.9 82 85.4
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 4.3e-29 131.0 82 84.1
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 1.3e-25 119.4 82 72.0
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 3.2e-24 114.8 82 68.3
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 7.1e-24 113.6 82 75.6
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.2e-23 112.8 82 69.5
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 1.9e-21 105.5 82 64.6
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 2.8e-20 101.7 82 63.4
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 4.8e-20 100.9 82 65.9
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 3.1e-19 98.2 82 58.5
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 3.4e-18 94.7 82 56.1
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 3.4e-18 94.7 82 63.4
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 5.8e-18 94.0 77 64.9
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.0e-17 93.2 82 56.1
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 1.0e-17 93.2 82 63.4
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 4.9e-17 90.9 82 61.0
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 1.1e-16 89.7 82 56.1
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 2.5e-16 88.6 82 54.9
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 3.2e-16 88.2 82 54.9
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 4.2e-16 87.8 82 59.8
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 4.2e-16 87.8 82 59.8
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 5.5e-16 87.4 82 54.9
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 9.3e-16 86.7 82 58.5
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 9.3e-16 86.7 82 54.9
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 1.2e-15 86.3 79 53.2
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 1.6e-15 85.9 82 54.9
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 2.1e-15 85.5 82 54.9
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 2.1e-15 85.5 82 51.2
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 2.7e-15 85.1 82 58.5
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 3.5e-15 84.7 82 54.9
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 3.5e-15 84.7 82 52.4
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 3.5e-15 84.7 82 52.4
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 6.0e-15 84.0 82 58.5
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 6.0e-15 84.0 82 53.7
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 7.9e-15 83.6 82 51.2
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 1.0e-14 83.2 82 54.9
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 1.0e-14 83.2 82 52.4
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 1.0e-14 83.2 73 61.6
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 1.3e-14 82.8 82 52.4
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 1.8e-14 82.4 82 52.4
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 3.0e-14 81.6 81 55.6
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 5.1e-14 80.9 77 57.1
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 1.1e-13 79.7 72 54.2
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 1.5e-13 79.3 82 48.8
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 1.9e-13 79.0 85 50.6
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 2.5e-13 78.6 82 50.0
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 3.3e-13 78.2 82 52.4
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 7.4e-13 77.0 82 48.8
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 1.6e-12 75.9 83 48.2
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 1.6e-12 75.9 80 52.5
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 2.1e-12 75.5 85 48.2
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 2.8e-12 75.1 77 51.9
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 4.8e-12 74.3 75 56.0
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 6.2e-12 73.9 82 50.0
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 8.2e-12 73.6 84 48.8
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 1.1e-11 73.2 82 47.6
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 1.4e-11 72.8 83 45.8
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 1.8e-11 72.4 82 51.2
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 1.8e-11 72.4 82 47.6
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 4.0e-11 71.2 77 48.1
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 5.3e-11 70.9 82 45.1
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 5.3e-11 70.9 82 45.1
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 6.9e-11 70.5 81 44.4
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 6.9e-11 70.5 82 45.1
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 1.2e-10 69.7 82 48.8
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.5e-10 69.3 82 46.3
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 1.5e-10 69.3 79 46.8
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 1.5e-10 69.3 81 46.9
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 1.5e-10 69.3 81 46.9
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 1.5e-10 69.3 82 46.3
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 2.0e-10 68.9 82 45.1
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 2.6e-10 68.6 77 46.8
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 3.4e-10 68.2 81 45.7
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 5.8e-10 67.4 81 45.7
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 5.8e-10 67.4 82 46.3
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.3e-09 66.2 68 52.9
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 1.3e-09 66.2 68 52.9
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 1.7e-09 65.9 71 52.1
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 2.2e-09 65.5 79 45.6
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 2.9e-09 65.1 38 76.3
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 3.8e-09 64.7 82 45.1
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 3.8e-09 64.7 68 51.5
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 4.6e-07 57.8 68 44.1
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 6.1e-07 57.4 38 73.7
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 3.0e-06 55.1 39 64.1


User provided reference genes

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