Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.1e-56 223.0 105 100.0
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.9e-29 132.5 75 85.3
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.9e-29 132.5 75 85.3
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 8.0e-28 127.1 75 82.7
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.4e-27 126.3 75 81.3
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 3.0e-27 125.2 75 80.0
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 5.2e-27 124.4 75 80.0
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 8.8e-27 123.6 65 90.8
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 8.8e-27 123.6 65 87.7
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 8.8e-27 123.6 65 90.8
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.1e-26 123.2 75 78.7
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.1e-26 123.2 75 78.7
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.1e-26 123.2 75 78.7
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 1.1e-26 123.2 75 77.3
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.1e-26 123.2 75 78.7
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 1.1e-26 123.2 75 77.3
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.5e-26 122.9 65 87.7
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.5e-26 122.9 65 87.7
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 1.5e-26 122.9 75 78.7
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.5e-26 122.9 75 78.7
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.5e-26 122.9 75 78.7
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.5e-26 122.9 75 78.7
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.5e-26 122.9 65 87.7
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.5e-26 122.9 75 78.7
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 2.0e-26 122.5 75 77.3
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.0e-26 122.5 75 77.3
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.0e-26 122.5 75 77.3
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 2.0e-26 122.5 75 77.3
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 2.6e-26 122.1 75 77.3
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 2.6e-26 122.1 75 78.7
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 2.6e-26 122.1 75 77.3
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.6e-26 122.1 65 89.2
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 3.3e-26 121.7 75 77.3
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 3.3e-26 121.7 75 77.3
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 3.3e-26 121.7 75 77.3
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 3.3e-26 121.7 75 77.3
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 4.4e-26 121.3 75 77.3
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 4.4e-26 121.3 75 77.3
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 5.7e-26 120.9 75 76.0
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 5.7e-26 120.9 75 76.0
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 5.7e-26 120.9 75 76.0
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 5.7e-26 120.9 75 76.0
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 5.7e-26 120.9 75 76.0
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 5.7e-26 120.9 75 76.0
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 5.7e-26 120.9 75 76.0
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 7.5e-26 120.6 75 77.3
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 7.5e-26 120.6 75 77.3
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 7.5e-26 120.6 75 77.3
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 7.5e-26 120.6 75 76.0
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 7.5e-26 120.6 75 76.0
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 7.5e-26 120.6 75 76.0
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 7.5e-26 120.6 75 76.0
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 7.5e-26 120.6 75 76.0
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 9.7e-26 120.2 65 86.2
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 9.7e-26 120.2 75 77.3
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 1.3e-25 119.8 75 74.7
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.3e-25 119.8 75 74.7
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.3e-25 119.8 75 74.7
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.3e-25 119.8 75 74.7
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.3e-25 119.8 75 76.0
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.3e-25 119.8 75 76.0
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 1.7e-25 119.4 65 84.6
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 1.7e-25 119.4 75 76.0
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.7e-25 119.4 75 76.0
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.7e-25 119.4 75 76.0
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 2.2e-25 119.0 65 84.6
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.2e-25 119.0 75 76.0
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.2e-25 119.0 75 76.0
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 2.2e-25 119.0 75 76.0
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 2.8e-25 118.6 75 74.7
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 2.8e-25 118.6 75 74.7
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 2.8e-25 118.6 75 74.7
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 2.8e-25 118.6 65 84.6
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 2.8e-25 118.6 75 74.7
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 2.8e-25 118.6 75 74.7
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 2.8e-25 118.6 75 74.7
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 2.8e-25 118.6 75 74.7
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.7e-25 118.2 75 76.0
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 3.7e-25 118.2 75 74.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 4.8e-25 117.9 75 74.7
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 4.8e-25 117.9 75 74.7
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 6.3e-25 117.5 65 83.1
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 8.2e-25 117.1 75 74.7
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 8.2e-25 117.1 75 74.7
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 1.1e-24 116.7 75 74.7
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.1e-24 116.7 75 74.7
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.1e-24 116.7 65 83.1
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.4e-24 116.3 75 73.3
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-24 116.3 75 74.7
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-24 116.3 75 74.7
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-24 116.3 75 74.7
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 1.8e-24 115.9 75 72.0
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.8e-24 115.9 82 70.7
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.8e-24 115.9 65 83.1
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 4.1e-24 114.8 65 83.1
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 5.3e-24 114.4 75 72.0
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 7.0e-24 114.0 68 79.4
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 7.0e-24 114.0 75 72.0
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 9.1e-24 113.6 65 81.5
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 1.2e-23 113.2 75 69.3
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.6e-23 112.8 75 70.7
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 2.0e-23 112.5 67 77.6
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 2.0e-23 112.5 65 80.0
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 2.0e-23 112.5 75 72.0
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 7.7e-23 110.5 75 70.7
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 7.7e-23 110.5 65 78.5
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 1.7e-22 109.4 64 78.1
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 5.0e-22 107.8 56 89.3
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.1e-21 106.7 75 70.7
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.9e-21 105.9 82 64.6
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 1.9e-21 105.9 82 64.6
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 9.4e-21 103.6 87 60.9
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 6.1e-20 100.9 65 67.7
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 8.0e-20 100.5 75 64.0
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.0e-19 100.1 65 72.3
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 2.0e-18 95.9 51 88.2
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 7.5e-18 94.0 65 64.6
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 1.1e-16 90.1 79 54.4
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 1.6e-15 86.3 69 65.2
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.5e-13 79.7 38 94.7
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 9.5e-13 77.0 73 53.4
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.2e-12 76.6 59 61.0
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 3.0e-11 72.0 64 46.9
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.1e-08 61.6 42 73.8
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 9.2e-08 60.5 36 77.8
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 5.9e-07 57.8 43 60.5
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 1.7e-06 56.2 42 64.3


User provided reference genes

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