Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 4.8e-20 100.5 63 100.0
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 2.4e-11 71.6 40 70.0
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 5.3e-11 70.5 40 72.5
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 5.3e-11 70.5 40 75.0
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 6.9e-11 70.1 40 70.0
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 6.9e-11 70.1 38 73.7
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 1.2e-10 69.3 40 70.0
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 2.0e-10 68.6 40 70.0
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 2.6e-10 68.2 37 73.0
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 3.4e-10 67.8 38 71.1
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 3.4e-10 67.8 39 74.4
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 4.5e-10 67.4 40 67.5
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 4.5e-10 67.4 39 74.4
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 5.9e-10 67.0 40 70.0
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 7.7e-10 66.6 39 71.8
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 1.0e-09 66.2 38 71.1
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 1.0e-09 66.2 37 73.0
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 1.3e-09 65.9 38 73.7
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 1.3e-09 65.9 39 71.8
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 1.3e-09 65.9 40 67.5
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.3e-09 65.9 40 65.0
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.3e-09 65.9 40 65.0
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 1.3e-09 65.9 40 65.0
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 2.2e-09 65.1 39 71.8
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 2.2e-09 65.1 38 73.7
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 2.9e-09 64.7 39 69.2
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 5.0e-09 63.9 40 65.0
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 5.0e-09 63.9 40 65.0
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 5.0e-09 63.9 40 65.0
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 5.0e-09 63.9 40 65.0
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 5.0e-09 63.9 40 67.5
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 5.0e-09 63.9 40 65.0
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 5.0e-09 63.9 38 65.8
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 6.5e-09 63.5 39 69.2
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 6.5e-09 63.5 39 66.7
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 6.5e-09 63.5 40 67.5
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 6.5e-09 63.5 39 66.7
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 6.5e-09 63.5 38 65.8
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 6.5e-09 63.5 39 69.2
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 6.5e-09 63.5 37 70.3
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 8.5e-09 63.2 39 69.2
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 8.5e-09 63.2 37 70.3
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 1.1e-08 62.8 40 65.0
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 1.1e-08 62.8 40 65.0
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 1.1e-08 62.8 38 71.1
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 1.1e-08 62.8 36 75.0
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 1.1e-08 62.8 38 71.1
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 1.9e-08 62.0 39 66.7
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 1.9e-08 62.0 39 66.7
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 2.5e-08 61.6 38 68.4
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 3.2e-08 61.2 38 65.8
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 3.2e-08 61.2 38 68.4
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 4.2e-08 60.8 35 74.3
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 5.5e-08 60.5 35 74.3
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 5.5e-08 60.5 38 68.4
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 5.5e-08 60.5 39 59.0
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 5.5e-08 60.5 38 60.5
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 7.2e-08 60.1 38 68.4
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 7.2e-08 60.1 39 66.7
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 9.4e-08 59.7 37 67.6
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 9.4e-08 59.7 37 67.6
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 1.2e-07 59.3 40 60.0
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 1.2e-07 59.3 35 71.4
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 1.2e-07 59.3 38 65.8
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 1.6e-07 58.9 38 65.8
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 1.6e-07 58.9 35 68.6
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 1.6e-07 58.9 38 65.8
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 2.1e-07 58.5 40 62.5
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 2.1e-07 58.5 37 64.9
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 2.1e-07 58.5 39 64.1
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 2.7e-07 58.2 34 70.6
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 2.7e-07 58.2 39 61.5
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 2.7e-07 58.2 39 56.4
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 3.6e-07 57.8 40 65.0
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 7.9e-07 56.6 38 60.5
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 1.4e-06 55.8 40 55.0
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 1.8e-06 55.5 39 59.0
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 2.3e-06 55.1 39 56.4
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 3.0e-06 54.7 38 63.2
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.9e-06 54.3 38 60.5
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 3.9e-06 54.3 39 59.0
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 3.9e-06 54.3 39 59.0
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 3.9e-06 54.3 38 60.5


User provided reference genes

Program Settings