Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.2e-146 521.5 305 100.0
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.0e-128 463.8 304 87.2
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.4e-125 452.6 309 86.4
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.1e-125 452.2 321 79.8
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.2e-124 450.3 305 85.9
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 5.0e-123 444.9 304 86.2
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.5e-122 443.4 304 85.9
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.5e-122 442.6 304 80.3
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 5.5e-122 441.4 303 83.2
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.6e-121 439.9 303 83.2
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 4.7e-121 438.3 304 81.9
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.3e-120 436.0 303 84.8
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.2e-119 433.7 304 80.3
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-119 433.3 304 81.6
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.5e-119 433.3 304 83.2
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 3.7e-118 428.7 304 78.6
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 1.1e-117 427.2 308 81.8
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.4e-117 426.8 305 82.3
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.1e-117 425.6 308 85.7
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.0e-116 422.9 313 80.5
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.5e-116 421.8 303 77.2
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 7.7e-116 421.0 303 76.9
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.3e-115 420.2 303 83.2
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 3.8e-115 418.7 307 79.8
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 5.0e-115 418.3 304 74.7
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 5.0e-115 418.3 304 69.4
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 8.6e-115 417.5 303 80.9
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.5e-114 416.8 303 79.2
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.3e-114 415.6 308 76.3
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 4.3e-114 415.2 304 80.9
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 4.3e-114 415.2 306 76.8
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 5.6e-114 414.8 304 80.3
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 2.8e-113 412.5 304 77.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 2.8e-113 412.5 304 83.6
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 4.7e-113 411.8 306 69.9
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.0e-112 410.6 310 80.6
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.8e-112 409.8 305 81.0
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.3e-112 409.5 304 78.9
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 6.8e-112 407.9 306 74.5
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 1.5e-111 406.8 306 81.0
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 2.0e-111 406.4 304 80.6
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.0e-111 406.4 304 67.8
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 5.7e-111 404.8 300 68.3
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 2.9e-110 402.5 303 82.5
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 6.4e-110 401.4 318 76.7
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 8.3e-110 401.0 312 67.3
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.8e-109 399.8 305 79.7
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 7.0e-109 397.9 308 68.8
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 2.0e-108 396.4 281 79.7
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 3.5e-108 395.6 304 75.7
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 3.9e-107 392.1 307 69.1
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 8.6e-107 391.0 307 69.1
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 8.6e-107 391.0 304 68.1
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.1e-106 390.6 307 69.4
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.9e-106 389.8 304 75.7
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.5e-106 389.4 307 68.7
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 4.3e-106 388.7 305 76.1
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.6e-105 386.7 337 73.9
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 3.6e-105 385.6 307 68.4
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 3.6e-105 385.6 338 61.5
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 3.6e-105 385.6 305 73.8
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 6.2e-105 384.8 307 70.7
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.4e-104 383.6 304 67.8
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.4e-104 383.6 314 74.8
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 5.2e-104 381.7 308 64.6
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 2.6e-103 379.4 286 81.8
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 5.8e-103 378.3 308 65.9
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 5.8e-103 378.3 313 63.6
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 7.5e-103 377.9 308 66.2
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 9.8e-103 377.5 308 65.9
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.9e-101 373.2 317 70.7
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 5.4e-101 371.7 303 71.3
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.2e-100 370.5 308 63.6
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.2e-100 370.5 278 80.9
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.7e-100 369.4 254 87.8
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.0e-99 367.5 254 87.4
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.3e-99 366.3 308 63.0
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.3e-99 366.3 309 72.5
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 3.0e-99 365.9 318 68.9
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.5e-98 363.6 307 62.9
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 5.6e-98 361.7 309 65.4
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.2e-97 360.5 279 80.6
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.8e-96 356.7 310 70.0
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 2.3e-96 356.3 304 61.2
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.3e-96 356.3 304 63.5
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.0e-96 355.5 317 71.0
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 6.8e-96 354.8 308 61.0
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.5e-95 353.6 265 80.8
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 4.4e-95 352.1 304 63.8
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 5.8e-95 351.7 317 70.3
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 4.9e-94 348.6 274 77.4
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-93 347.4 355 60.0
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-93 347.4 355 60.0
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.6e-92 343.6 281 77.2
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 2.1e-92 343.2 304 73.0
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-91 340.5 276 76.4
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.5e-90 337.0 304 73.0
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 8.9e-88 327.8 321 62.9
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 5.8e-87 325.1 337 54.0
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 7.6e-87 324.7 304 55.6
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 9.9e-87 324.3 305 58.4
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.3e-86 323.9 349 60.2
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.3e-86 323.9 349 60.2
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 3.8e-86 322.4 256 64.8
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 9.2e-85 317.8 261 64.4
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.2e-84 317.4 240 81.7
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.3e-83 313.9 308 57.8
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 7.6e-79 298.1 271 60.5
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.1e-77 294.3 213 80.3
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 4.2e-77 292.4 231 82.3
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 4.6e-76 288.9 213 81.2
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.3e-75 286.6 231 64.1
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 3.3e-74 282.7 238 79.8
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 3.1e-72 276.2 297 53.2
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 6.9e-72 275.0 231 63.2
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.5e-71 273.9 249 60.6
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.6e-71 273.1 230 77.8
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.6e-71 273.1 195 91.8
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 9.9e-71 271.2 230 77.0
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 4.9e-70 268.9 294 53.7
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 7.4e-66 255.0 236 58.9
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.1e-65 253.4 242 68.2
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 1.8e-64 250.4 231 74.0
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 6.9e-64 248.4 214 77.1
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.3e-62 244.2 232 73.3
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.4e-61 240.7 230 72.2
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.3e-57 227.6 126 86.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-52 211.1 241 53.1
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.6e-52 210.7 243 67.5
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 1.0e-51 208.0 295 44.4
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 3.3e-50 203.0 233 52.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 3.3e-50 203.0 233 52.8
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.4e-47 193.0 281 43.4
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 7.2e-45 185.3 324 47.2
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.7e-41 172.9 244 54.9
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 8.2e-41 171.8 273 51.3
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-39 167.5 162 59.3
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.0e-39 167.2 145 74.5
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.0e-38 164.9 149 79.9
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.2e-36 157.9 118 67.8
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 4.6e-36 156.0 172 52.9
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.8e-35 154.1 74 94.6
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 6.7e-35 152.1 326 35.6
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.1e-32 144.8 246 40.7
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 1.6e-28 131.0 73 75.3
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 5.2e-27 125.9 73 76.7
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 4.4e-26 122.9 90 68.9
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 9.7e-26 121.7 157 64.3
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 7.2e-21 105.5 59 72.9
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 9.7e-18 95.1 126 34.1
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 1.4e-16 91.3 50 72.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 4.5e-15 86.3 70 68.6
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.7e-14 84.3 92 48.9
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.9e-14 83.6 100 49.0
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 5.5e-13 79.3 128 42.2
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 9.8e-10 68.6 46 71.7
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.2e-09 67.4 44 72.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 7.0e-08 62.4 100 39.0


User provided reference genes

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