Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 6.8e-229 797.0 401 100.0
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 1.2e-204 716.5 397 89.9
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.8e-200 702.6 399 86.7
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.3e-190 669.8 399 83.0
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.6e-190 669.5 398 83.2
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 5.8e-188 661.0 398 82.4
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 8.4e-187 657.1 396 80.6
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.4e-186 656.4 396 80.6
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 9.3e-186 653.7 400 82.0
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 3.5e-185 651.7 396 80.1
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 4.6e-185 651.4 395 81.5
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 4.6e-185 651.4 395 81.5
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 1.0e-184 650.2 395 81.3
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 3.9e-184 648.3 397 80.4
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 2.5e-183 645.6 401 80.3
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 5.7e-183 644.4 394 81.7
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 5.7e-183 644.4 403 78.2
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 9.7e-183 643.7 395 80.3
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 3.7e-182 641.7 390 79.5
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 8.2e-182 640.6 398 79.9
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 1.8e-181 639.4 400 81.0
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 2.2e-179 632.5 400 78.5
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 5.0e-179 631.3 388 79.9
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 8.5e-179 630.6 404 79.0
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 1.4e-178 629.8 395 79.2
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 4.2e-178 628.2 395 77.7
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 7.2e-178 627.5 388 79.4
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 7.2e-178 627.5 398 78.6
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.6e-177 626.3 398 78.4
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 3.6e-177 625.2 395 78.7
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 7.9e-177 624.0 394 78.4
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.0e-176 623.6 388 78.4
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 6.7e-176 620.9 410 75.6
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.1e-175 620.2 398 77.4
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.0e-175 619.4 398 77.6
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 3.3e-175 618.6 386 77.5
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 4.3e-175 618.2 388 79.4
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 4.3e-175 618.2 404 78.7
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 9.7e-175 617.1 395 77.7
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 2.2e-174 615.9 394 76.9
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 3.7e-174 615.1 388 77.3
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 8.2e-174 614.0 394 77.2
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.8e-173 612.8 401 75.8
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.8e-173 612.8 400 75.8
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 2.4e-173 612.5 395 77.0
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.4e-173 612.5 398 76.9
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 3.1e-173 612.1 388 78.1
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 6.9e-173 610.9 395 76.7
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 9.1e-173 610.5 404 77.5
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.2e-172 610.1 400 75.8
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 2.6e-172 609.0 398 78.1
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 2.9e-171 605.5 397 74.8
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 3.8e-171 605.1 399 73.7
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 8.5e-171 604.0 398 74.6
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.1e-170 603.6 365 80.8
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 2.5e-170 602.4 381 77.4
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 4.2e-170 601.7 387 76.2
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 7.2e-170 600.9 397 73.6
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 1.6e-169 599.7 456 68.6
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 3.0e-168 595.5 395 75.4
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 2.6e-167 592.4 386 75.4
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 4.8e-166 588.2 398 71.9
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.1e-165 587.0 399 72.9
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 2.4e-165 585.9 398 74.6
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 4.1e-165 585.1 398 71.9
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 2.0e-164 582.8 384 72.9
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 2.2e-163 579.3 384 72.7
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 9.4e-162 573.9 395 73.7
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 6.1e-161 571.2 385 72.2
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 6.1e-161 571.2 402 71.4
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 8.0e-161 570.9 353 78.5
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.0e-160 570.5 442 69.9
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 5.2e-160 568.2 405 69.6
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 8.8e-160 567.4 393 71.0
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 2.8e-158 562.4 393 72.8
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 7.0e-157 557.8 403 70.0
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.6e-156 556.6 402 68.4
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 5.9e-156 554.7 394 69.5
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.0e-155 553.9 380 76.1
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 8.5e-155 550.8 391 69.1
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 8.5e-155 550.8 407 66.8
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.1e-154 550.4 397 70.0
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 7.2e-154 547.7 391 68.8
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 2.1e-153 546.2 391 68.5
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 2.1e-153 546.2 391 68.5
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 2.1e-153 546.2 391 68.5
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 2.1e-153 546.2 407 66.3
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 2.7e-153 545.8 391 68.5
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 2.1e-145 519.6 399 65.9
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 3.1e-141 505.8 355 71.3
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.6e-140 503.4 355 71.3
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.8e-127 458.4 411 60.6
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 8.1e-121 438.0 275 79.3
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 1.2e-108 397.5 254 79.1
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.5e-106 390.6 299 67.2
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.2e-100 370.9 255 72.9
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.6e-97 360.5 455 45.7
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 6.9e-96 355.1 393 52.7
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 4.5e-87 325.9 408 43.6
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 7.9e-84 315.1 382 44.2
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.2e-77 293.1 222 71.6
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 2.1e-76 290.4 204 71.1
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.1e-69 268.1 424 36.8
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 9.7e-66 255.0 259 45.6
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 6.5e-62 242.3 221 61.5
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.4e-61 241.1 147 77.6
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 2.6e-58 230.3 246 48.8
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 3.6e-52 209.9 349 42.1
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.8e-49 200.3 346 33.5
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.3e-46 191.4 248 47.6
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.7e-46 191.0 120 77.5
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 2.5e-45 187.2 120 70.8
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 5.7e-42 176.0 293 36.9
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 4.1e-40 169.9 97 81.4
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 5.0e-38 162.9 258 42.2
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 2.7e-31 140.6 82 79.3
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 5.2e-27 126.3 366 30.9
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 2.9e-22 110.5 121 51.2
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 3.3e-21 107.1 182 37.4
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 7.3e-21 105.9 62 82.3
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 1.6e-20 104.8 127 48.0
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 9.2e-16 89.0 46 87.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 2.0e-15 87.8 176 36.4
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 8.6e-14 82.4 60 61.7
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.1e-08 65.5 31 93.5
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.9e-08 64.7 37 78.4
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 1.0e-06 58.9 133 31.6


User provided reference genes

Program Settings