Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040829 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 1.2e-80 303.1 149 100.0
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 3.3e-27 125.6 81 76.5
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 8.1e-26 120.9 82 72.0
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 1.4e-25 120.2 79 72.2
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.4e-25 120.2 81 71.6
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 4.0e-25 118.6 104 60.6
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 6.9e-25 117.9 83 69.9
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 1.5e-24 116.7 81 71.6
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 2.6e-24 115.9 86 67.4
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 2.6e-24 115.9 76 71.1
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 9.9e-24 114.0 79 70.9
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 1.3e-23 113.6 74 74.3
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 2.2e-23 112.8 74 77.0
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 2.2e-23 112.8 75 72.0
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 2.9e-23 112.5 81 67.9
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 3.8e-23 112.1 71 74.6
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 6.4e-23 111.3 83 67.5
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.1e-22 110.5 84 69.0
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 1.4e-22 110.2 84 65.5
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 1.4e-22 110.2 98 55.1
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.9e-22 109.8 84 69.0
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 1.9e-22 109.8 84 69.0
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.9e-22 109.8 73 71.2
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 2.4e-22 109.4 81 66.7
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 3.2e-22 109.0 79 69.6
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 3.2e-22 109.0 73 74.0
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 3.2e-22 109.0 80 62.5
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 3.2e-22 109.0 72 76.4
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 4.2e-22 108.6 73 75.3
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 4.2e-22 108.6 80 62.5
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 5.4e-22 108.2 76 68.4
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 9.3e-22 107.5 88 62.5
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 9.3e-22 107.5 72 70.8
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 9.3e-22 107.5 73 71.2
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 1.2e-21 107.1 73 68.5
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.1e-21 106.3 82 65.9
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 2.1e-21 106.3 72 70.8
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 3.5e-21 105.5 73 69.9
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 3.5e-21 105.5 82 64.6
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 3.5e-21 105.5 73 69.9
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 4.6e-21 105.1 84 66.7
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 7.8e-21 104.4 70 70.0
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 7.8e-21 104.4 72 70.8
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 7.8e-21 104.4 72 70.8
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 1.0e-20 104.0 74 68.9
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 1.0e-20 104.0 82 64.6
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 1.0e-20 104.0 71 70.4
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 1.0e-20 104.0 74 64.9
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 1.7e-20 103.2 72 70.8
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 2.3e-20 102.8 72 66.7
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 3.0e-20 102.4 98 56.1
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 3.0e-20 102.4 77 64.9
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 3.9e-20 102.1 73 64.4
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 3.9e-20 102.1 73 64.4
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 3.9e-20 102.1 72 66.7
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 6.6e-20 101.3 73 64.4
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 6.6e-20 101.3 73 65.8
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 6.6e-20 101.3 73 64.4
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 6.6e-20 101.3 73 64.4
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 6.6e-20 101.3 73 64.4
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 6.6e-20 101.3 88 63.6
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 8.7e-20 100.9 74 68.9
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 8.7e-20 100.9 72 68.1
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 1.1e-19 100.5 72 69.4
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 1.5e-19 100.1 73 65.8
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 2.5e-19 99.4 81 64.2
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 2.5e-19 99.4 67 71.6
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 2.5e-19 99.4 98 52.0
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 3.3e-19 99.0 92 56.5
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 4.3e-19 98.6 100 55.0
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 5.6e-19 98.2 73 67.1
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 5.6e-19 98.2 73 67.1
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 9.6e-19 97.4 73 67.1
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 9.6e-19 97.4 73 67.1
MSTRG.8884 Avicennia marina HOM05D003369 ORTHO05D004089 9.6e-19 97.4 82 62.2
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 1.3e-18 97.1 77 61.0
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 2.1e-18 96.3 71 66.2
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 2.1e-18 96.3 64 73.4
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 2.1e-18 96.3 72 70.8
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 2.1e-18 96.3 83 59.0
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 2.8e-18 95.9 74 68.9
PGSC0003DMG400011657 Solanum tuberosum HOM05D003369 ORTHO05D004089 4.8e-18 95.1 102 53.9
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 6.2e-18 94.7 101 50.5
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 8.1e-18 94.4 108 53.7
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 8.1e-18 94.4 76 60.5
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 8.1e-18 94.4 82 58.5
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 1.1e-17 94.0 83 57.8
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 1.4e-17 93.6 71 66.2
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 1.4e-17 93.6 72 63.9
CDE06G0307 Ceratophyllum demersum HOM05D001225 ORTHO05D001252 1.8e-17 93.2 74 63.5
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 2.4e-17 92.8 72 68.1
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 3.1e-17 92.4 69 68.1
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 3.1e-17 92.4 73 64.4
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 4.0e-17 92.0 72 59.7
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 4.0e-17 92.0 65 70.8
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 4.0e-17 92.0 84 57.1
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 6.9e-17 91.3 90 55.6
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 6.9e-17 91.3 71 64.8
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 9.0e-17 90.9 77 59.7
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 9.0e-17 90.9 69 66.7
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 1.2e-16 90.5 73 63.0
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 3.4e-16 89.0 74 62.2
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 4.5e-16 88.6 71 63.4
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 4.5e-16 88.6 85 52.9
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 4.5e-16 88.6 85 52.9
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 7.6e-16 87.8 73 57.5
Sc05g0004500 Simmondsia chinensis HOM05D003369 ORTHO05D004089 1.3e-15 87.0 67 59.7
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 1.7e-15 86.7 73 60.3
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 1.7e-15 86.7 73 60.3
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 1.7e-15 86.7 73 60.3
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 1.7e-15 86.7 73 60.3
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 1.7e-15 86.7 73 60.3
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 2.2e-15 86.3 67 67.2
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 2.9e-15 85.9 69 59.4
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 6.4e-15 84.7 71 63.4
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 8.4e-15 84.3 73 64.4
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 8.4e-15 84.3 72 59.7
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 1.4e-14 83.6 98 49.0
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 1.4e-14 83.6 63 73.0
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 1.9e-14 83.2 95 51.6
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 1.9e-14 83.2 83 59.0
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 2.4e-14 82.8 72 62.5
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 4.2e-14 82.0 72 62.5
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 1.2e-13 80.5 86 53.5
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 4.6e-13 78.6 72 58.3
Lsat_1_v5_gn_8_162600 Lactuca sativa HOM05D003369 ORTHO05D004089 1.0e-12 77.4 72 56.9
SEGI_10703 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 1.0e-12 77.4 71 52.1
Lsat_1_v5_gn_8_20221 Lactuca sativa HOM05D003369 ORTHO05D004089 2.3e-12 76.3 76 55.3
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 3.0e-12 75.9 80 53.8
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 3.9e-12 75.5 61 59.0
Lsat_1_v5_gn_8_135680 Lactuca sativa HOM05D003369 ORTHO05D004089 8.7e-12 74.3 75 53.3
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 1.9e-11 73.2 80 53.8
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 2.5e-11 72.8 80 53.8
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 2.5e-11 72.8 75 54.7
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 1.4e-09 67.0 87 48.3
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 1.4e-09 67.0 67 53.7
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 1.4e-09 67.0 70 58.6
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 6.9e-09 64.7 76 46.1
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 1.3e-07 60.5 66 50.0
Lsat_1_v5_gn_4_53561 Lactuca sativa HOM05D003369 ORTHO05D004089 1.4e-06 57.0 65 49.2


User provided reference genes

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