Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 9.6e-43 176.4 88 100.0
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 8.4e-39 163.3 88 95.5
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 1.9e-27 125.6 89 75.3
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 5.6e-27 124.0 89 74.2
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-22 109.8 62 90.3
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-22 109.0 62 88.7
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.2e-22 107.8 62 87.1
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.1e-21 104.0 62 85.5
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.1e-21 104.0 62 85.5
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-20 102.8 61 85.2
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 5.1e-20 100.9 62 80.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.9e-19 99.0 62 77.4
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 4.8e-18 94.4 62 77.4
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 1.2e-16 89.7 59 78.0
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 1.7e-15 85.9 62 72.6
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 2.2e-15 85.5 62 67.7
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 2.9e-15 85.1 62 69.4
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 5.0e-15 84.3 61 65.6
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 8.5e-15 83.6 56 75.0
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 1.1e-14 83.2 63 68.3
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 1.4e-14 82.8 55 78.2
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 1.9e-14 82.4 55 76.4
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 1.9e-14 82.4 64 65.6
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 5.5e-14 80.9 54 75.9
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 7.2e-14 80.5 63 68.3
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 9.4e-14 80.1 63 65.1
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 1.2e-13 79.7 55 76.4
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 1.2e-13 79.7 55 72.7
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 1.6e-13 79.3 55 72.7
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.6e-13 79.3 55 72.7
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.6e-13 79.3 55 72.7
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 1.6e-13 79.3 63 66.7
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 2.1e-13 79.0 54 75.9
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 2.1e-13 79.0 61 63.9
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 2.7e-13 78.6 55 70.9
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 3.6e-13 78.2 60 63.3
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 3.6e-13 78.2 55 70.9
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 3.6e-13 78.2 55 72.7
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 3.6e-13 78.2 62 62.9
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 6.1e-13 77.4 62 66.1
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 6.1e-13 77.4 62 66.1
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 7.9e-13 77.0 55 67.3
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 7.9e-13 77.0 58 69.0
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 1.0e-12 76.6 61 62.3
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 2.3e-12 75.5 55 67.3
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.3e-12 75.5 61 62.3
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 3.0e-12 75.1 62 59.7
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 3.9e-12 74.7 52 69.2
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 6.7e-12 73.9 55 63.6
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 8.8e-12 73.6 61 55.7
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.1e-11 73.2 55 67.3
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 2.5e-11 72.0 58 62.1
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 2.5e-11 72.0 56 64.3
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.3e-11 71.6 52 65.4
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 3.3e-11 71.6 55 63.6
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 7.4e-11 70.5 59 55.9
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.7e-10 69.3 55 65.5
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 2.2e-10 68.9 56 58.9
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 2.2e-10 68.9 53 64.2
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 2.8e-10 68.6 55 65.5
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 2.8e-10 68.6 49 71.4
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 3.7e-10 68.2 61 50.8
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.7e-10 68.2 59 54.2
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 3.7e-10 68.2 61 57.4
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 4.8e-10 67.8 47 70.2
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 4.8e-10 67.8 52 61.5
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 4.8e-10 67.8 59 54.2
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 6.3e-10 67.4 55 60.0
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 8.2e-10 67.0 43 76.7
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 8.2e-10 67.0 72 52.8
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 1.1e-09 66.6 57 61.4
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.1e-09 66.6 55 60.0
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 1.8e-09 65.9 57 56.1
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 1.8e-09 65.9 57 56.1
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.8e-09 65.9 57 56.1
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 9.1e-09 63.5 50 64.0
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 9.1e-09 63.5 58 50.0
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.0e-08 62.4 50 62.0
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.3e-07 59.7 51 56.9
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 3.8e-07 58.2 59 50.8
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.8e-07 58.2 55 50.9
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 8.5e-07 57.0 51 54.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 1.1e-06 56.6 51 52.9
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.9e-06 55.8 51 51.0
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.9e-06 55.8 51 51.0
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.9e-06 55.8 51 51.0
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 1.9e-06 55.8 51 51.0
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 2.5e-06 55.5 52 48.1
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 2.5e-06 55.5 51 52.9
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 3.2e-06 55.1 52 51.9
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 3.2e-06 55.1 52 51.9
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 3.2e-06 55.1 52 51.9
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 3.2e-06 55.1 52 51.9
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 3.2e-06 55.1 52 51.9
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 3.2e-06 55.1 51 51.0
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.2e-06 55.1 59 49.2
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 5.5e-06 54.3 51 49.0
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 7.2e-06 53.9 52 50.0
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 7.2e-06 53.9 51 51.0
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 7.2e-06 53.9 61 47.5


User provided reference genes

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