Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 2199.9 1189 100.0
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 2094.3 1193 96.1
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1649.0 1196 73.9
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1647.9 1192 74.4
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1595.9 1043 78.0
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1588.5 1254 68.8
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1476.1 1042 72.0
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1449.5 1047 69.1
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1395.6 1037 68.6
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1394.8 1045 67.8
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1380.5 1038 68.6
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1379.8 1043 66.1
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1377.8 1045 67.0
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1377.1 1043 68.0
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1370.1 1043 65.9
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1368.2 1016 67.1
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1367.8 1041 67.4
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1350.1 1040 65.7
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1349.3 1042 65.0
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1347.8 1041 66.2
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1347.4 1014 66.8
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1346.6 1040 66.6
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1343.2 1045 65.9
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1343.2 945 71.2
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1342.0 1040 66.0
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1340.1 1045 65.9
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1339.3 1045 65.7
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1331.6 1038 65.0
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1326.6 1016 65.6
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1326.6 1016 65.5
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1323.9 1036 64.1
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1323.5 1050 64.3
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1318.9 1108 61.6
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1318.5 1016 65.4
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1313.5 1037 64.4
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1312.0 1036 63.8
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1310.4 1037 64.8
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1308.9 1036 64.3
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1308.1 1014 65.9
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1304.3 1035 63.5
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1303.5 1036 63.6
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1303.1 1041 64.3
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1303.1 1040 63.7
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1293.5 1038 63.7
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1288.9 1037 63.3
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1285.0 1039 63.2
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1281.9 1037 64.9
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1276.5 1072 61.3
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1275.8 1037 63.4
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1271.5 1042 62.7
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1271.5 1039 64.1
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1268.1 1030 63.9
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1266.1 1045 62.0
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1259.2 1020 62.4
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1256.5 1047 61.4
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1255.0 1037 62.8
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1249.2 1048 60.8
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1247.6 1080 61.0
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1242.3 1038 61.8
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1235.3 1004 63.1
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1233.8 973 65.8
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1231.1 1514 47.9
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1219.5 1213 57.5
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1216.1 988 62.6
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1208.0 1023 60.9
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1195.3 1025 60.3
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1193.3 1226 55.1
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1189.1 1027 59.2
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1177.9 1014 60.0
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1177.9 1014 60.0
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1177.5 1059 58.5
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1170.6 1027 59.4
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1168.3 1020 59.4
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1156.4 1038 59.2
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1156.0 936 62.7
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1154.0 997 60.1
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1146.0 1017 59.0
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1139.4 1050 58.3
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1130.2 1000 58.7
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 0.0e+00 1107.8 996 58.3
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1090.1 1039 55.9
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 7.0e-306 1054.3 1049 53.7
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 5.4e-298 1028.1 1052 52.6
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 9.2e-290 1000.7 1037 52.0
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 1.6e-289 1000.0 1026 52.3
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 6.4e-283 978.0 1134 48.9
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 2.7e-265 919.5 840 58.9
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 5.8e-260 901.7 717 62.9
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 5.5e-258 895.2 726 62.0
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 8.5e-243 844.7 1070 45.0
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 3.0e-232 809.7 634 64.2
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.0e-228 797.0 707 59.1
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 1.0e-216 758.1 1086 42.9
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.4e-213 747.7 664 59.0
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.8e-213 747.3 656 59.3
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.7e-198 697.6 664 55.7
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 4.3e-194 682.9 647 56.7
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 3.6e-185 653.3 971 40.1
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 8.6e-179 632.1 1052 38.2
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 5.1e-171 606.3 492 63.8
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.9e-170 604.4 1027 36.0
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.3e-170 603.6 1083 37.2
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.0e-163 582.0 1069 36.7
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 4.8e-129 466.8 1236 29.6
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 3.6e-108 397.5 432 52.3
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.8e-89 334.7 300 59.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 4.6e-63 247.7 241 50.6
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 2.4e-59 235.3 179 63.1
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 1.3e-38 166.4 116 68.1
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 2.2e-20 105.9 71 77.5
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 2.9e-17 95.5 91 50.5
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 1.1e-16 93.6 107 44.9
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 1.4e-16 93.2 81 56.8
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 3.0e-14 85.5 91 51.6
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 2.0e-13 82.8 46 82.6
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 1.0e-09 70.5 61 57.4
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.1e-07 62.8 36 75.0
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 6.1e-07 61.2 90 40.0
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 1.0e-06 60.5 42 64.3
Lsat_1_v5_gn_5_105340 Lactuca sativa HOM05D006302 ORTHO05D007960 1.8e-06 59.7 75 45.3
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 3.9e-06 58.5 36 75.0


User provided reference genes

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