Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040808 Camellia sinensis var. sinensis HOM05D006974 ORTHO05D008869 3.1e-53 211.5 100 100.0
Ciclev10004462m.g Citrus clementina HOM05D006974 ORTHO05D008869 2.8e-14 82.0 66 56.1
Haze_13839 Corylus avellana HOM05D006974 ORTHO05D008869 8.1e-14 80.5 51 70.6
Thhalv10024578m.g Eutrema salsugineum HOM05D006974 ORTHO05D008869 1.1e-13 80.1 65 55.4
Cfa008219 Carpinus fangiana HOM05D006974 ORTHO05D008869 1.4e-13 79.7 91 47.3
Ca_12619_v3 Cicer arietinum L. HOM05D006974 ORTHO05D008869 3.1e-13 78.6 74 55.4
Actinidia13564 Actinidia chinensis HOM05D006974 ORTHO05D008869 4.0e-13 78.2 94 51.1
BcaC06g32824 Brassica carinata HOM05D006974 ORTHO05D008869 4.0e-13 78.2 65 55.4
Nitab4.5_0000162g0040 Nicotiana tabacum HOM05D006974 ORTHO05D008869 6.9e-13 77.4 81 50.6
vmacro06778 Vaccinium macrocarpon HOM05D006974 ORTHO05D008869 6.9e-13 77.4 95 49.5
Ah.07g208060 Amaranthus hybridus HOM05D006974 ORTHO05D008869 9.0e-13 77.0 48 70.8
Carub.0007s1572 Capsella rubella HOM05D006974 ORTHO05D008869 9.0e-13 77.0 65 52.3
PGR142G3751 Punica granatum HOM05D006974 ORTHO05D008869 9.0e-13 77.0 74 50.0
Sp7g23310 Schrenkiella parvula HOM05D006974 ORTHO05D008869 1.2e-12 76.6 67 49.3
Hund11805 Selenicereus undatus HOM05D006974 ORTHO05D008869 1.2e-12 76.6 59 59.3
AT4G25290 Arabidopsis thaliana HOM05D006974 ORTHO05D008869 1.5e-12 76.3 65 52.3
MSTRG.27184 Avicennia marina HOM05D006974 ORTHO05D008869 1.5e-12 76.3 63 55.6
EL10Ac3g05814 Beta vulgaris HOM05D006974 ORTHO05D008869 2.0e-12 75.9 85 47.1
Rhsim03G0169600 Rhododendron simsii HOM05D006974 ORTHO05D008869 2.0e-12 75.9 95 48.4
SalBow4G2048 Salvia bowleyana HOM05D006974 ORTHO05D008869 2.0e-12 75.9 65 53.8
Dinv22966 Davidia involucrata HOM05D006974 ORTHO05D008869 3.4e-12 75.1 46 69.6
TWI39G1009 Tripterygium wilfordii HOM05D006974 ORTHO05D008869 3.4e-12 75.1 84 48.8
C07p54150 Brassica napus HOM05D006974 ORTHO05D008869 5.8e-12 74.3 65 53.8
Hma1.2p1_0654F.1_g196510 Hydrangea macrophylla HOM05D006974 ORTHO05D008869 5.8e-12 74.3 42 76.2
SalBow4G0051 Salvia bowleyana HOM05D006974 ORTHO05D008869 7.6e-12 73.9 65 52.3
Nn1g01127 Nelumbo nucifera HOM05D006974 ORTHO05D008869 1.0e-11 73.6 90 46.7
AL7G27850 Arabidopsis lyrata HOM05D006974 ORTHO05D008869 1.3e-11 73.2 65 49.2
CiPaw.04G061700 Carya illinoinensis HOM05D006974 ORTHO05D008869 1.3e-11 73.2 74 50.0
TAR375G0533 Trochodendron aralioides HOM05D006974 ORTHO05D008869 1.3e-11 73.2 89 50.6
CARHR232700 Cardamine hirsuta HOM05D006974 ORTHO05D008869 1.7e-11 72.8 65 50.8
DCAR_020200 Daucus carota HOM05D006974 ORTHO05D008869 2.2e-11 72.4 75 45.3
Psat7g194280 Pisum sativum HOM05D006974 ORTHO05D008869 2.2e-11 72.4 81 46.9
A03p55870 Brassica napus HOM05D006974 ORTHO05D008869 2.9e-11 72.0 58 55.2
BolC7t45901H Brassica oleracea HOM05D006974 ORTHO05D008869 2.9e-11 72.0 58 56.9
BraA03t14658Z Brassica rapa HOM05D006974 ORTHO05D008869 3.8e-11 71.6 65 50.8
CAN.G254.11 Capsicum annuum HOM05D006974 ORTHO05D008869 3.8e-11 71.6 83 49.4
Thecc.03G158800 Theobroma cacao HOM05D006974 ORTHO05D008869 4.9e-11 71.2 75 49.3
GSVIVG01018563001 Vitis vinifera HOM05D006974 ORTHO05D008869 4.9e-11 71.2 86 48.8
arahy.Tifrunner.gnm1.ann1.X6V7BH Arachis hypogaea HOM05D006974 ORTHO05D008869 6.5e-11 70.9 74 47.3
Lsat_1_v5_gn_8_9321 Lactuca sativa HOM05D006974 ORTHO05D008869 6.5e-11 70.9 95 46.3
HPP92_005353 Vanilla planifolia HOM05D006974 ORTHO05D008869 6.5e-11 70.9 80 47.5
arahy.Tifrunner.gnm1.ann1.XGT93E Arachis hypogaea HOM05D006974 ORTHO05D008869 8.4e-11 70.5 74 45.9
Cpa.g.sc3.293 Carica papaya HOM05D006974 ORTHO05D008869 1.1e-10 70.1 85 47.1
SGA_v2.0_scaffold2G01176 Striga asiatica HOM05D006974 ORTHO05D008869 1.1e-10 70.1 52 59.6
ClCG01G005180 Citrullus lanatus HOM05D006974 ORTHO05D008869 1.4e-10 69.7 76 48.7
Atru.chr1.665 Acer truncatum HOM05D006974 ORTHO05D008869 1.9e-10 69.3 42 71.4
FAN06G2397 Fragaria x ananassa HOM05D006974 ORTHO05D008869 1.9e-10 69.3 76 46.1
Nitab4.5_0011187g0010 Nicotiana tabacum HOM05D006974 ORTHO05D008869 1.9e-10 69.3 41 73.2
Eucgr.K00151 Eucalyptus grandis HOM05D006974 ORTHO05D008869 2.5e-10 68.9 56 53.6
FAN06G1320 Fragaria x ananassa HOM05D006974 ORTHO05D008869 2.5e-10 68.9 76 46.1
MBI04_g35667_MAGBIO Magnolia biondii HOM05D006974 ORTHO05D008869 3.2e-10 68.6 68 50.0
Potri.015G129500 Populus trichocarpa HOM05D006974 ORTHO05D008869 3.2e-10 68.6 74 47.3
unitig_46.g18767 Utricularia gibba HOM05D006974 ORTHO05D008869 3.2e-10 68.6 75 45.3
FAN03G1551 Fragaria x ananassa HOM05D006974 ORTHO05D008869 4.2e-10 68.2 76 47.4
FAN03G1949 Fragaria x ananassa HOM05D006974 ORTHO05D008869 4.2e-10 68.2 76 47.4
Lj8A39G31 Lonicera japonica HOM05D006974 ORTHO05D008869 4.2e-10 68.2 41 73.2
Prupe.2G280600 Prunus persica HOM05D006974 ORTHO05D008869 4.2e-10 68.2 74 45.9
Migut.F00452 Erythranthe guttata HOM05D006974 ORTHO05D008869 5.5e-10 67.8 53 56.6
THA.LOC104808287 Tarenaya hassleriana HOM05D006974 ORTHO05D008869 5.5e-10 67.8 54 57.4
RcHm_v2.0_Chr1g0374901 Rosa chinensis HOM05D006974 ORTHO05D008869 7.1e-10 67.4 78 50.0
AUR62016182 Chenopodium quinoa HOM05D006974 ORTHO05D008869 9.3e-10 67.0 85 45.9
Gohir.A12G265001 Gossypium hirsutum HOM05D006974 ORTHO05D008869 9.3e-10 67.0 78 47.4
PSO478G3596 Papaver somniferum HOM05D006974 ORTHO05D008869 9.3e-10 67.0 91 38.5
Sed0012101 Sechium edule HOM05D006974 ORTHO05D008869 1.2e-09 66.6 79 43.0
HanXRQChr05g0142471 Helianthus annuus HOM05D006974 ORTHO05D008869 2.1e-09 65.9 97 39.2
Lj3g0014807 Lotus japonicus HOM05D006974 ORTHO05D008869 2.1e-09 65.9 71 53.5
Gohir.D12G265200 Gossypium hirsutum HOM05D006974 ORTHO05D008869 2.7e-09 65.5 89 44.9
Gorai.008G284900 Gossypium raimondii HOM05D006974 ORTHO05D008869 2.7e-09 65.5 89 44.9
COL.COLO4_14152 Corchorus olitorius HOM05D006974 ORTHO05D008869 3.5e-09 65.1 46 60.9
FAN01G0571 Fragaria x ananassa HOM05D006974 ORTHO05D001482 4.6e-09 64.7 75 45.3
Medtr4g036495 Medicago truncatula HOM05D006974 ORTHO05D008869 6.0e-09 64.3 76 48.7
MD01G1184400 Malus domestica HOM05D006974 ORTHO05D008869 7.9e-09 63.9 82 46.3
Duzib205G0143 Durio zibethinus HOM05D006974 ORTHO05D008869 1.0e-08 63.5 57 50.9
QL09p019059 Quercus lobata HOM05D006974 ORTHO05D008869 1.3e-08 63.2 86 41.9
FAN10G1329 Fragaria x ananassa HOM05D006974 ORTHO05D008869 1.8e-08 62.8 81 44.4
SEGI_07793 Sequoiadendron giganteum HOM05D006974 ORTHO05D008869 1.8e-08 62.8 59 54.2
Cc02_g04050 Coffea canephora HOM05D006974 ORTHO05D008869 2.3e-08 62.4 56 50.0
Aqoxy7G00678 Aquilegia oxysepala HOM05D006974 ORTHO05D008869 6.7e-08 60.8 41 61.0
CDE11G0471 Ceratophyllum demersum HOM05D006974 ORTHO05D008869 8.7e-08 60.5 40 65.0
ECA233G0710 Erigeron canadensis HOM05D006974 ORTHO05D008869 1.9e-07 59.3 54 53.7
Pp3c3_8370 Physcomitrium patens HOM05D006974 ORTHO05D008869 4.3e-07 58.2 41 53.7
AagrBONN_evm.TU.Sc2ySwM_228.586 Anthoceros agrestis HOM05D006974 ORTHO05D008869 5.7e-07 57.8 61 44.3
Os09g0532700 Oryza sativa ssp. japonica HOM05D006974 ORTHO05D008869 2.8e-06 55.5 44 56.8
Pp3c6_9800 Physcomitrium patens HOM05D006974 ORTHO05D008869 3.7e-06 55.1 76 32.9
Lj1C983G7 Lonicera japonica HOM05D006974 ORTHO05D008869 6.2e-06 54.3 35 71.4


User provided reference genes

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