Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 7.0e-46 186.8 87 100.0
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.8e-34 148.3 81 82.7
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 8.0e-34 146.7 81 84.0
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.1e-33 146.4 82 80.5
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.4e-33 146.0 82 80.5
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.4e-33 146.0 82 82.9
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.8e-33 145.6 82 80.5
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.3e-33 145.2 82 76.8
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.3e-33 145.2 82 81.7
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 3.1e-33 144.8 82 84.1
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 3.1e-33 144.8 82 80.5
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 4.0e-33 144.4 82 80.5
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 5.2e-33 144.1 82 79.3
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 6.8e-33 143.7 81 82.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 8.9e-33 143.3 82 81.7
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 8.9e-33 143.3 82 80.5
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 8.9e-33 143.3 82 76.8
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.2e-32 142.9 82 80.5
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.0e-32 142.1 83 73.5
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 2.0e-32 142.1 82 79.3
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 2.6e-32 141.7 82 75.6
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.4e-32 141.4 83 73.5
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.8e-32 140.6 82 75.6
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 5.8e-32 140.6 82 76.8
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 7.5e-32 140.2 82 74.4
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 7.5e-32 140.2 82 75.6
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 7.5e-32 140.2 82 79.3
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 9.8e-32 139.8 82 76.8
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 9.8e-32 139.8 82 81.7
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 9.8e-32 139.8 82 78.0
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 9.8e-32 139.8 82 75.6
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.7e-31 139.0 81 75.3
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.7e-31 139.0 82 76.8
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.7e-31 139.0 81 77.8
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 1.7e-31 139.0 83 80.7
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 2.9e-31 138.3 82 73.2
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.9e-31 138.3 82 76.8
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 3.7e-31 137.9 81 80.2
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.7e-31 137.9 82 73.2
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 3.7e-31 137.9 82 73.2
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.7e-31 137.9 82 76.8
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 3.7e-31 137.9 82 76.8
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 4.9e-31 137.5 82 75.6
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.4e-31 137.1 82 74.4
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 6.4e-31 137.1 81 77.8
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 6.4e-31 137.1 81 77.8
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 8.3e-31 136.7 82 76.8
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.1e-30 136.3 82 76.8
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.1e-30 136.3 81 79.0
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.1e-30 136.3 82 74.4
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.4e-30 136.0 82 75.6
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.4e-30 136.0 81 77.8
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.9e-30 135.6 82 74.4
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.9e-30 135.6 82 73.2
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.9e-30 135.6 82 73.2
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.9e-30 135.6 82 73.2
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 2.4e-30 135.2 83 71.1
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 3.2e-30 134.8 82 74.4
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 3.2e-30 134.8 82 70.7
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 3.2e-30 134.8 82 73.2
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 3.2e-30 134.8 81 76.5
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 4.1e-30 134.4 81 72.8
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 4.1e-30 134.4 82 75.6
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 4.1e-30 134.4 82 75.6
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.1e-30 134.4 81 76.5
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.1e-30 134.4 82 75.6
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 4.1e-30 134.4 82 73.2
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 5.4e-30 134.0 82 70.7
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.4e-30 134.0 81 76.5
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 5.4e-30 134.0 82 73.2
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 7.0e-30 133.7 82 75.6
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.0e-30 133.7 82 72.0
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 7.0e-30 133.7 82 72.0
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 7.0e-30 133.7 81 71.6
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 7.0e-30 133.7 83 73.5
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.2e-29 132.9 82 73.2
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.6e-29 132.5 82 69.5
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.6e-29 132.5 82 69.5
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.7e-29 131.7 82 72.0
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 3.5e-29 131.3 82 74.4
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.6e-29 131.0 82 73.2
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 7.8e-29 130.2 81 71.6
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.0e-28 129.8 82 70.7
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.0e-28 129.8 82 68.3
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.3e-28 129.4 85 70.6
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.3e-28 129.4 82 68.3
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.7e-28 129.0 81 70.4
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.7e-28 129.0 82 70.7
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 3.9e-28 127.9 82 73.2
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.9e-28 127.9 82 63.4
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 5.1e-28 127.5 83 69.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 5.1e-28 127.5 83 71.1
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 5.1e-28 127.5 86 67.4
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.1e-27 126.3 82 65.9
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.5e-27 125.9 83 66.3
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.9e-27 125.6 81 69.1
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.9e-27 125.6 81 61.7
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.9e-27 125.6 83 68.7
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.5e-27 125.2 84 69.0
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.5e-27 125.2 83 69.9
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 5.6e-27 124.0 85 67.1
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 5.6e-27 124.0 85 67.1
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 9.5e-27 123.2 81 69.1
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 9.5e-27 123.2 82 68.3
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.2e-26 122.9 81 69.1
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.2e-26 122.9 85 65.9
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.2e-26 122.9 86 67.4
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.6e-26 122.5 81 66.7
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 2.1e-26 122.1 79 70.9
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.1e-26 122.1 80 71.2
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.1e-26 122.1 82 68.3
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 3.6e-26 121.3 82 63.4
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 3.6e-26 121.3 86 66.3
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 6.2e-26 120.6 85 64.7
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.2e-26 120.6 86 66.3
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.2e-26 120.6 82 64.6
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 8.1e-26 120.2 86 66.3
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 8.1e-26 120.2 87 65.5
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 8.1e-26 120.2 87 65.5
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.8e-25 119.0 81 66.7
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 2.3e-25 118.6 82 65.9
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 3.1e-25 118.2 81 66.7
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.1e-25 118.2 82 65.9
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 5.2e-25 117.5 86 66.3
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 5.8e-24 114.0 81 61.7
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 9.9e-24 113.2 80 57.5
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.3e-23 112.8 84 65.5
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.7e-23 112.5 81 58.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 3.7e-23 111.3 81 59.3
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 6.4e-23 110.5 81 56.8
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.4e-22 109.4 81 55.6
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.4e-22 109.4 83 60.2
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 1.9e-22 109.0 79 68.4
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.9e-22 109.0 81 55.6
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 5.4e-22 107.5 81 53.1
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 5.4e-22 107.5 81 54.3
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.4e-22 107.5 79 62.0
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 7.1e-22 107.1 81 53.1
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 7.1e-22 107.1 81 53.1
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 7.1e-22 107.1 82 59.8
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.2e-21 106.3 81 53.1
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.2e-21 106.3 81 53.1
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.5e-21 104.8 78 55.1
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.5e-21 104.8 78 55.1
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.5e-21 104.8 82 53.7
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.0e-21 104.0 81 53.1
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.0e-20 103.2 82 52.4
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.0e-20 103.2 82 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.3e-20 102.8 81 58.0
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.7e-20 102.4 64 70.3
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 5.1e-20 100.9 55 83.6
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.2e-18 96.3 64 65.6
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 2.2e-15 85.5 82 51.2
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 6.4e-15 84.0 83 42.2
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.5e-11 72.0 87 42.5


User provided reference genes

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