Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.1e-39 166.0 73 100.0
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 3.7e-16 87.8 62 64.5
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.4e-15 85.9 54 68.5
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.4e-15 85.9 54 68.5
CSS0027128 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 7.0e-15 83.6 36 97.2
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.6e-14 82.4 54 64.8
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 4.6e-14 80.9 54 61.1
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 4.6e-14 80.9 54 61.1
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 5.9e-14 80.5 54 59.3
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 5.9e-14 80.5 54 59.3
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 5.9e-14 80.5 54 59.3
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 5.9e-14 80.5 59 55.9
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 7.8e-14 80.1 56 55.4
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.0e-13 79.7 64 51.6
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.3e-13 79.3 54 57.4
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.3e-13 79.3 54 57.4
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 1.3e-13 79.3 54 59.3
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 1.7e-13 79.0 54 63.0
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 1.7e-13 79.0 54 59.3
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 1.7e-13 79.0 54 59.3
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 2.3e-13 78.6 60 55.0
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 2.3e-13 78.6 62 51.6
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 2.3e-13 78.6 58 55.2
CANSAT54G0658 Cannabis sativa HOM05D004321 ORTHO05D004889 2.9e-13 78.2 54 59.3
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.9e-13 78.2 55 54.5
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 2.9e-13 78.2 54 59.3
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 2.9e-13 78.2 54 59.3
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 3.9e-13 77.8 54 55.6
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 3.9e-13 77.8 54 57.4
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 5.0e-13 77.4 55 58.2
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 6.6e-13 77.0 60 55.0
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 6.6e-13 77.0 60 56.7
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 6.6e-13 77.0 55 56.4
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 8.6e-13 76.6 57 56.1
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 8.6e-13 76.6 57 56.1
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 1.1e-12 76.3 54 57.4
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 1.1e-12 76.3 54 57.4
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 1.1e-12 76.3 54 57.4
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 1.5e-12 75.9 54 55.6
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 1.5e-12 75.9 54 59.3
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 1.5e-12 75.9 54 59.3
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 1.5e-12 75.9 53 58.5
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 1.5e-12 75.9 54 59.3
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 1.5e-12 75.9 53 60.4
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 1.9e-12 75.5 55 52.7
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 1.9e-12 75.5 60 55.0
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 1.9e-12 75.5 54 59.3
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 1.9e-12 75.5 54 59.3
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.9e-12 75.5 59 57.6
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 1.9e-12 75.5 54 55.6
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 1.9e-12 75.5 54 55.6
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.9e-12 75.5 54 55.6
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 2.5e-12 75.1 61 55.7
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 2.5e-12 75.1 54 59.3
Oeu031979.1 Olea europaea HOM05D004321 ORTHO05D004889 2.5e-12 75.1 53 60.4
Oeu033243.1 Olea europaea HOM05D004321 ORTHO05D004889 2.5e-12 75.1 53 60.4
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 2.5e-12 75.1 54 53.7
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 2.5e-12 75.1 53 62.3
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 2.5e-12 75.1 54 59.3
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 3.3e-12 74.7 54 55.6
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 3.3e-12 74.7 54 55.6
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 4.3e-12 74.3 54 57.4
Cc01_g12570 Coffea canephora HOM05D004321 ORTHO05D004889 4.3e-12 74.3 54 59.3
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 4.3e-12 74.3 54 57.4
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 4.3e-12 74.3 54 59.3
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 5.6e-12 73.9 54 55.6
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 5.6e-12 73.9 53 58.5
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 5.6e-12 73.9 54 57.4
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 5.6e-12 73.9 54 59.3
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 5.6e-12 73.9 54 53.7
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 5.6e-12 73.9 54 53.7
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 5.6e-12 73.9 54 59.3
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 5.6e-12 73.9 54 57.4
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 7.3e-12 73.6 54 57.4
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 7.3e-12 73.6 54 61.1
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 7.3e-12 73.6 54 53.7
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 9.5e-12 73.2 54 57.4
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 9.5e-12 73.2 54 57.4
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.2e-11 72.8 54 53.7
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 1.2e-11 72.8 59 52.5
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 1.6e-11 72.4 54 57.4
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.6e-11 72.4 54 57.4
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.6e-11 72.4 54 57.4
CAN.G711.6 Capsicum annuum HOM05D004321 ORTHO05D004889 2.1e-11 72.0 54 55.6
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 2.8e-11 71.6 54 55.6
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 2.8e-11 71.6 54 55.6
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 3.6e-11 71.2 54 57.4
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 4.7e-11 70.9 56 51.8
Thecc.09G325400 Theobroma cacao HOM05D004321 ORTHO05D004889 4.7e-11 70.9 53 54.7
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 6.1e-11 70.5 54 55.6
Medtr4g063080 Medicago truncatula HOM05D004321 ORTHO05D004889 6.1e-11 70.5 54 53.7
COL.COLO4_18474 Corchorus olitorius HOM05D004321 ORTHO05D004889 8.0e-11 70.1 53 54.7
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 1.4e-10 69.3 55 52.7
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 1.4e-10 69.3 40 70.0
Manes.04G032700 Manihot esculenta HOM05D004321 ORTHO05D004889 1.4e-10 69.3 53 54.7
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 1.8e-10 68.9 36 77.8
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 2.3e-10 68.6 55 52.7
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 2.3e-10 68.6 31 83.9
Manes.11G132700 Manihot esculenta HOM05D004321 ORTHO05D004889 3.1e-10 68.2 53 54.7
Gohir.A05G097300 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 67.8 53 54.7
Gohir.A05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 67.8 53 54.7
Gohir.D03G128000 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 67.8 53 54.7
Gohir.D05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 67.8 53 54.7
Gohir.D05G097500 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.0e-10 67.8 53 54.7
Gorai.003G134700 Gossypium raimondii HOM05D004321 ORTHO05D004889 4.0e-10 67.8 53 54.7
Gorai.009G101100 Gossypium raimondii HOM05D004321 ORTHO05D004889 4.0e-10 67.8 53 54.7
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 5.2e-10 67.4 36 77.8
Gorai.009G101000 Gossypium raimondii HOM05D004321 ORTHO05D004889 5.2e-10 67.4 53 54.7
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 6.8e-10 67.0 30 83.3
Gohir.A03G040001 Gossypium hirsutum HOM05D004321 ORTHO05D004889 8.9e-10 66.6 53 52.8
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 1.2e-09 66.2 31 80.6
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 2.0e-09 65.5 36 75.0
MBI14_g11678_MAGBIO Magnolia biondii HOM05D004321 ORTHO05D004889 2.6e-09 65.1 30 80.0
PSO339G6107 Papaver somniferum HOM05D004321 ORTHO05D004889 2.6e-09 65.1 51 54.9
Zm00001eb355680 Zea mays HOM05D004321 ORTHO05D004889 2.6e-09 65.1 54 48.1
AL5G25260 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 4.4e-09 64.3 54 50.0
AL8G36130 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 4.4e-09 64.3 54 50.0
AT3G46430 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 4.4e-09 64.3 54 50.0
AT5G59613 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 4.4e-09 64.3 54 50.0
arahy.Tifrunner.gnm1.ann1.NFV9ZK Arachis hypogaea HOM05D004321 ORTHO05D004889 4.4e-09 64.3 55 47.3
Thhalv10015813m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 4.4e-09 64.3 54 50.0
THA.LOC104814874 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 4.4e-09 64.3 55 47.3
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 4.4e-09 64.3 31 83.9
Aa31LG4G15480 Aethionema arabicum HOM05D004321 ORTHO05D004889 5.8e-09 63.9 54 50.0
arahy.Tifrunner.gnm1.ann1.CZHF5K Arachis hypogaea HOM05D004321 ORTHO05D004889 5.8e-09 63.9 54 48.1
BcaB01g04562 Brassica carinata HOM05D004321 ORTHO05D004889 5.8e-09 63.9 54 48.1
A02p07010 Brassica napus HOM05D004321 ORTHO05D004889 5.8e-09 63.9 54 48.1
BraA02t05781Z Brassica rapa HOM05D004321 ORTHO05D004889 5.8e-09 63.9 54 48.1
CARHR154850 Cardamine hirsuta HOM05D004321 ORTHO05D004889 5.8e-09 63.9 54 50.0
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 7.5e-09 63.5 31 77.4
CARHR273120 Cardamine hirsuta HOM05D004321 ORTHO05D004889 7.5e-09 63.5 54 48.1
BcaB08g36233 Brassica carinata HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
BcaB08g36235 Brassica carinata HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
BcaC01g06508 Brassica carinata HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
BcaC03g13996 Brassica carinata HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
BcaC04g19749 Brassica carinata HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
A03p11570 Brassica napus HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
A10p16870 Brassica napus HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
C02p12350 Brassica napus HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
C03p13450 Brassica napus HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
C09p52020 Brassica napus HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
BolC2t07335H Brassica oleracea HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
BolC3t13802H Brassica oleracea HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
BolC9t58064H Brassica oleracea HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
BraA03t10470Z Brassica rapa HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
BraA10t43766Z Brassica rapa HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
Carub.0005s1223 Capsella rubella HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
Carub.0008s2029 Capsella rubella HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
Peaxi162Scf01003g00014 Petunia axillaris HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 51.9
Sp5g15250 Schrenkiella parvula HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
Sp6g21320 Schrenkiella parvula HOM05D004321 ORTHO05D004889 1.3e-08 62.8 54 48.1
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 1.7e-08 62.4 31 74.2
THA.LOC109116048 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 1.7e-08 62.4 54 46.3
Thhalv10003016m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 2.2e-08 62.0 54 48.1
Os03g0606200 Oryza sativa ssp. japonica HOM05D004321 ORTHO05D004889 2.2e-08 62.0 52 50.0
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 3.7e-08 61.2 29 75.9
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 6.4e-08 60.5 29 75.9
Aa31sc23G280 Aethionema arabicum HOM05D004321 ORTHO05D004889 1.1e-07 59.7 31 74.2
Zm00001eb022520 Zea mays HOM05D003081 ORTHO05D004889 1.2e-06 56.2 31 67.7
Zm00001eb120950 Zea mays HOM05D004321 ORTHO05D004889 1.2e-06 56.2 31 67.7
RcHm_v2.0_Chr1g0340881 Rosa chinensis HOM05D004321 ORTHO05D004889 3.5e-06 54.7 29 72.4
RcHm_v2.0_Chr1g0367621 Rosa chinensis HOM05D004321 ORTHO05D004889 3.5e-06 54.7 29 72.4
RcHm_v2.0_Chr6g0265721 Rosa chinensis HOM05D004321 ORTHO05D004889 3.5e-06 54.7 29 72.4
RcHm_v2.0_Chr7g0198591 Rosa chinensis HOM05D004321 ORTHO05D004889 3.5e-06 54.7 29 72.4
RcHm_v2.0_Chr3g0463581 Rosa chinensis HOM05D004321 ORTHO05D004889 7.8e-06 53.5 29 72.4


User provided reference genes

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