Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 3.1e-226 788.1 391 100.0
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.1e-138 497.3 401 67.3
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.4e-125 453.8 393 61.3
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 2.1e-110 403.3 327 64.2
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 4.5e-108 395.6 397 55.2
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 7.1e-106 388.3 400 53.8
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.9e-104 382.5 463 48.6
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 4.3e-103 379.0 382 54.2
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 2.4e-101 373.2 392 56.1
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 5.9e-100 368.6 400 52.5
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 1.0e-99 367.9 393 51.7
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 5.7e-95 352.1 391 49.4
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 5.9e-92 342.0 379 49.1
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.7e-91 340.5 391 52.2
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 8.5e-91 338.2 391 51.9
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.1e-90 337.8 403 46.4
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 1.4e-90 337.4 429 46.2
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.2e-90 336.3 383 47.0
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 7.2e-90 335.1 391 51.4
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 3.6e-89 332.8 404 47.3
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 4.6e-89 332.4 380 48.2
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 1.8e-88 330.5 390 49.0
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 4.3e-87 325.9 393 47.6
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.3e-86 324.3 395 44.8
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 5.9e-84 315.5 391 46.5
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 2.2e-83 313.5 441 42.0
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 2.2e-83 313.5 423 42.6
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 5.0e-83 312.4 391 46.5
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 6.5e-83 312.0 396 46.7
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 1.2e-81 307.8 391 44.5
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 4.7e-81 305.8 408 44.1
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 6.1e-81 305.4 391 45.8
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.0e-80 303.1 384 45.6
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 3.9e-80 302.8 493 41.2
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.3e-79 299.7 390 44.6
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 9.7e-79 298.1 389 45.8
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 3.7e-78 296.2 395 46.3
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 4.8e-78 295.8 397 45.1
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 6.3e-78 295.4 374 46.0
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.1e-77 294.7 392 43.9
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 3.1e-77 293.1 389 43.7
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.6e-76 290.8 382 44.0
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 2.0e-76 290.4 400 44.5
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 2.6e-76 290.0 391 42.7
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 2.6e-76 290.0 385 46.2
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 7.7e-76 288.5 381 44.4
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.3e-75 287.7 382 44.8
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 8.5e-75 285.0 461 39.0
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 1.9e-74 283.9 395 43.8
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.9e-74 283.9 385 42.6
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 2.5e-74 283.5 399 43.6
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 3.2e-74 283.1 398 42.7
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 1.2e-73 281.2 391 40.7
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 1.2e-73 281.2 400 43.0
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 2.1e-73 280.4 339 46.3
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 2.7e-73 280.0 390 41.8
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 1.1e-71 274.6 466 36.9
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 4.4e-71 272.7 387 41.9
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 3.7e-70 269.6 387 42.1
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 6.3e-70 268.9 380 42.4
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 8.2e-70 268.5 389 42.2
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 8.2e-70 268.5 382 41.6
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 1.1e-69 268.1 389 41.4
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 5.3e-69 265.8 388 42.0
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 4.5e-68 262.7 392 41.6
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 5.9e-68 262.3 388 41.5
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 2.9e-67 260.0 383 39.7
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.0e-67 259.2 380 42.9
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 9.4e-66 255.0 381 42.3
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.7e-65 253.4 202 61.4
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 4.0e-64 249.6 314 49.4
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 8.8e-64 248.4 183 64.5
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 3.4e-63 246.5 401 40.1
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-61 241.1 415 38.8
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 5.4e-61 239.2 370 39.5
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.3e-59 234.6 353 39.7
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 3.8e-59 233.0 192 55.7
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.9e-58 230.7 174 56.9
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 2.5e-58 230.3 347 42.4
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 5.5e-58 229.2 451 35.5
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.6e-57 227.6 376 35.9
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.3e-56 223.8 377 40.1
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 6.8e-56 222.2 390 37.4
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-54 217.6 271 43.5
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 2.8e-54 216.9 378 38.4
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.4e-53 214.5 254 45.3
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 1.2e-52 211.5 314 40.1
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.0e-52 210.7 173 56.1
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 5.9e-52 209.1 234 47.9
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 7.7e-52 208.8 376 37.0
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 5.0e-51 206.1 388 32.0
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 5.0e-51 206.1 193 53.4
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.9e-50 204.1 190 51.1
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 4.3e-50 203.0 198 49.5
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.6e-49 201.1 181 51.9
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 6.8e-48 195.7 257 43.2
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 3.4e-47 193.4 393 34.6
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 7.5e-47 192.2 386 32.1
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 7.5e-47 192.2 383 32.9
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.7e-46 189.9 202 45.0
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 4.9e-46 189.5 385 33.0
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 8.3e-46 188.7 367 34.6
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.4e-45 187.2 194 49.0
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 9.2e-45 185.3 191 48.2
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 1.2e-44 184.9 384 32.6
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 2.0e-44 184.1 190 44.7
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 3.5e-44 183.3 190 47.4
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.8e-44 182.2 387 33.9
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.0e-43 181.8 312 36.9
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.3e-43 181.4 153 58.2
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.3e-43 181.4 188 46.8
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 1.7e-43 181.0 190 46.8
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 2.3e-43 180.6 161 53.4
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 2.5e-42 177.2 216 42.6
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 3.3e-42 176.8 193 46.1
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 2.1e-41 174.1 174 51.1
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 2.1e-41 174.1 384 29.4
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 8.0e-41 172.2 196 47.4
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.0e-40 171.8 195 47.7
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 3.1e-40 170.2 386 33.2
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.2e-39 168.3 196 46.9
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.5e-39 167.9 197 46.7
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-39 167.5 193 46.6
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-39 167.5 193 46.6
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 2.0e-39 167.5 364 32.7
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 9.8e-39 165.2 190 44.7
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 6.0e-36 156.0 179 45.8
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 6.0e-36 156.0 179 45.8
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 6.6e-35 152.5 120 59.2
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 8.6e-35 152.1 177 44.6
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 1.9e-34 151.0 177 44.6
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 4.3e-34 149.8 177 44.6
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.1e-33 147.5 192 40.6
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 2.8e-33 147.1 298 31.5
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.8e-32 144.4 105 56.2
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 8.9e-32 142.1 151 43.0
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-31 141.7 149 45.0
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 2.0e-31 141.0 149 45.0
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 2.0e-31 141.0 149 45.0
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 3.4e-31 140.2 191 38.7
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.4e-31 140.2 97 58.8
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.1e-29 135.2 123 50.4
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.2e-29 133.7 117 51.3
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 9.2e-29 132.1 177 39.5
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.2e-28 131.7 311 29.6
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 4.6e-28 129.8 401 27.2
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 7.8e-28 129.0 116 55.2
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 2.3e-27 127.5 212 43.4
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-26 124.8 149 41.6
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 4.3e-26 123.2 114 50.0
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 3.1e-24 117.1 185 37.3
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.4e-23 113.2 346 28.3
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 4.4e-23 113.2 259 36.3
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 2.2e-22 110.9 265 34.0
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 1.2e-20 105.1 263 33.1
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.6e-20 104.8 181 34.3
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 2.1e-20 104.4 140 40.0
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.2e-17 95.1 129 41.9
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.6e-15 87.4 91 46.2
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 3.8e-14 83.6 96 53.1
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 9.3e-13 79.0 63 58.7
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 2.1e-12 77.8 134 33.6
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 5.1e-11 73.2 49 63.3
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 6.6e-11 72.8 112 34.8
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 6.6e-11 72.8 112 34.8
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.3e-10 70.5 55 58.2
Actinidia37470 Actinidia chinensis HOM05D003815 ORTHO05D004218 1.6e-09 68.2 149 40.3
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 3.6e-09 67.0 53 58.5
SalBow6G0760 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.4e-08 64.3 236 24.2
Pp3c20_13303 Physcomitrium patens HOM05D003141 ORTHO05D000421 1.2e-07 62.0 186 26.3
HanXRQChr07g0195731 Helianthus annuus HOM05D001580 ORTHO05D001517 2.6e-07 60.8 164 28.0
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 4.5e-07 60.1 38 63.2
Migut.G00446 Erythranthe guttata HOM05D003860 ORTHO05D004218 2.9e-06 57.4 69 47.8
HanXRQChr05g0159921 Helianthus annuus HOM05D001580 ORTHO05D001517 3.8e-06 57.0 164 26.2


User provided reference genes

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