Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.4e-65 251.5 127 100.0
CSS0042485 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 4.9e-40 167.9 114 75.4
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 2.3e-29 132.5 107 67.3
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 8.2e-27 124.0 108 63.9
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 1.4e-23 113.2 111 61.3
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.3e-19 100.1 108 55.6
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.1e-18 97.1 108 53.7
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 9.0e-18 94.0 106 49.1
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 1.2e-17 93.6 110 55.5
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 2.6e-17 92.4 122 50.8
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 6.5e-16 87.8 104 49.0
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 1.4e-15 86.7 113 46.0
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 3.2e-15 85.5 111 51.4
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 2.1e-14 82.8 105 45.7
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 2.7e-14 82.4 123 44.7
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 4.6e-14 81.6 125 44.8
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 2.3e-13 79.3 115 47.8
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 2.3e-13 79.3 120 45.8
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 3.0e-13 79.0 119 42.0
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 5.1e-13 78.2 107 44.9
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.5e-12 76.6 115 43.5
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.9e-12 76.3 122 42.6
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 2.5e-12 75.9 113 46.0
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 3.3e-12 75.5 110 44.5
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 4.3e-12 75.1 103 47.6
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.2e-11 72.8 114 42.1
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 2.8e-11 72.4 113 43.4
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.8e-11 72.4 114 42.1
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 3.7e-11 72.0 112 42.9
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 4.8e-11 71.6 104 45.2
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.3e-11 71.2 117 39.3
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 8.2e-11 70.9 115 46.1
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 1.8e-10 69.7 108 38.9
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 1.8e-10 69.7 105 47.6
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 1.8e-10 69.7 119 42.0
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 2.4e-10 69.3 119 43.7
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 5.3e-10 68.2 108 38.9
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 5.3e-10 68.2 111 45.0
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 9.1e-10 67.4 107 43.9
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 9.1e-10 67.4 113 43.4
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 1.2e-09 67.0 107 43.9
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.5e-09 66.6 112 38.4
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.5e-09 66.6 114 41.2
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.6e-09 65.9 106 37.7
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.6e-09 65.9 78 53.8
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 3.4e-09 65.5 86 44.2
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 3.4e-09 65.5 105 40.0
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 3.4e-09 65.5 104 46.2
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 3.4e-09 65.5 130 40.8
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 4.5e-09 65.1 111 38.7
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 4.5e-09 65.1 107 43.9
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 4.5e-09 65.1 107 43.9
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 1.0e-08 63.9 115 40.9
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.0e-08 63.9 116 41.4
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.7e-08 63.2 113 36.3
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 1.7e-08 63.2 112 42.0
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 1.7e-08 63.2 112 41.1
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 2.9e-08 62.4 112 41.1
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 3.8e-08 62.0 111 37.8
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.8e-08 62.0 138 33.3
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 5.0e-08 61.6 116 40.5
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 6.5e-08 61.2 111 40.5
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 6.5e-08 61.2 109 40.4
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 6.5e-08 61.2 110 38.2
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 6.5e-08 61.2 110 38.2
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 6.5e-08 61.2 113 38.9
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 8.5e-08 60.8 125 32.8
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 8.5e-08 60.8 111 38.7
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 8.5e-08 60.8 136 33.1
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 1.1e-07 60.5 111 38.7
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.1e-07 60.5 111 38.7
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.1e-07 60.5 125 37.6
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 1.1e-07 60.5 120 36.7
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 1.4e-07 60.1 112 39.3
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.4e-07 60.1 116 40.5
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 4.2e-07 58.5 85 45.9
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 5.5e-07 58.2 123 34.1
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 5.5e-07 58.2 123 34.1
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 5.5e-07 58.2 105 41.9
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 7.2e-07 57.8 120 35.8
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.2e-06 57.0 129 38.0
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 1.6e-06 56.6 113 37.2
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.1e-06 56.2 124 34.7
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.7e-06 55.8 105 39.0
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.6e-06 55.5 110 36.4
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 6.1e-06 54.7 110 36.4
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.9e-06 54.3 124 33.9
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 7.9e-06 54.3 124 33.9


User provided reference genes

Program Settings