Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 4.8e-114 414.5 203 100.0
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 3.9e-63 245.4 214 64.0
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.8e-61 239.2 216 64.8
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.4e-60 236.9 214 61.2
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.4e-60 236.9 224 62.1
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 6.8e-60 234.6 211 63.0
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.3e-58 230.3 218 61.0
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.9e-57 226.5 214 60.3
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.2e-56 223.8 235 55.3
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 2.7e-56 222.6 219 58.9
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.5e-56 222.2 205 59.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 7.8e-56 221.1 203 58.6
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.0e-55 220.7 205 59.0
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.0e-55 219.2 212 61.3
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 8.7e-55 217.6 199 59.3
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.5e-54 216.1 205 58.0
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.3e-54 215.3 205 60.0
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.6e-54 214.9 217 58.1
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 7.3e-54 214.5 217 56.7
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 2.1e-53 213.0 215 56.3
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 2.4e-52 209.5 215 60.9
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.3e-52 208.4 211 53.6
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 6.9e-52 208.0 208 57.2
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 9.0e-52 207.6 220 54.1
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 9.0e-52 207.6 233 55.8
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.5e-51 206.8 217 55.3
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.6e-51 206.1 224 53.6
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.8e-50 202.2 218 56.4
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.4e-50 201.1 219 54.8
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-49 200.3 219 54.3
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 3.2e-49 199.1 213 53.1
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 3.2e-49 199.1 187 62.0
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.4e-49 198.4 219 54.3
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.2e-48 197.2 217 53.9
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.3e-47 193.0 213 55.9
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.0e-47 192.6 209 54.5
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.9e-47 192.2 185 57.8
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 5.1e-47 191.8 229 54.1
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 5.1e-47 191.8 209 53.6
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.6e-47 191.4 224 53.6
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.6e-47 191.4 224 53.6
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 8.7e-47 191.0 209 56.9
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.3e-46 189.1 208 53.4
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 9.6e-46 187.6 182 56.0
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.6e-46 187.6 223 51.6
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.3e-45 187.2 200 54.0
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 2.1e-45 186.4 256 44.9
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 2.1e-45 186.4 207 53.1
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.1e-45 186.4 224 52.2
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.8e-45 186.0 226 50.4
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.1e-45 184.5 223 50.2
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.1e-44 184.1 207 52.7
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.4e-44 183.0 223 49.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 3.1e-44 182.6 207 50.2
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 4.0e-44 182.2 210 50.5
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 2.0e-43 179.9 228 48.2
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 3.4e-43 179.1 219 51.6
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 3.4e-43 179.1 211 52.1
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 4.5e-43 178.7 206 50.0
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 5.8e-43 178.3 209 53.6
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.3e-42 177.2 209 50.7
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.7e-42 176.8 209 53.1
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.7e-42 176.8 222 50.0
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 2.9e-42 176.0 236 46.2
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 3.8e-42 175.6 158 64.6
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 4.9e-42 175.3 216 50.9
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 9.3e-41 171.0 214 47.2
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 2.7e-40 169.5 226 46.0
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.7e-40 169.5 213 47.9
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.7e-40 169.5 221 49.8
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.3e-39 166.4 213 48.4
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 3.0e-39 166.0 211 48.8
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.1e-38 164.1 205 47.8
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.5e-38 163.7 208 49.0
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 5.6e-38 161.8 198 54.0
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.4e-38 161.4 213 51.6
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 9.6e-38 161.0 238 44.5
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 2.8e-37 159.5 231 44.2
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 4.8e-37 158.7 238 42.9
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.1e-36 157.5 245 46.9
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.1e-36 157.5 219 48.9
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.4e-36 156.4 190 53.2
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 9.0e-36 154.5 236 42.4
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.0e-36 154.5 205 44.9
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 9.0e-36 154.5 221 42.5
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.2e-35 154.1 212 47.2
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.0e-35 153.3 211 46.9
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.5e-35 152.1 190 47.4
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 5.8e-35 151.8 210 46.2
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 7.6e-35 151.4 220 46.8
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 7.6e-35 151.4 217 44.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.0e-34 151.0 198 46.0
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-34 150.6 214 46.3
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.3e-34 150.6 214 46.3
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.3e-34 150.6 212 46.7
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.9e-34 149.4 212 46.7
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 3.8e-34 149.1 214 46.3
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 3.8e-34 149.1 214 46.3
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 3.8e-34 149.1 214 46.3
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 4.9e-34 148.7 206 50.5
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 4.9e-34 148.7 206 50.5
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.1e-33 147.5 187 45.5
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.9e-33 146.7 212 44.8
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-33 146.7 212 44.8
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.9e-33 146.7 212 44.8
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 1.9e-33 146.7 197 48.7
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.5e-33 146.4 219 46.6
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 5.5e-33 145.2 212 44.8
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 5.5e-33 145.2 212 44.8
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 7.1e-33 144.8 194 45.9
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.2e-32 144.1 212 45.8
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.1e-32 143.3 213 46.5
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-32 142.9 204 46.6
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 2.7e-32 142.9 215 45.1
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 7.9e-32 141.4 201 44.8
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 7.9e-32 141.4 208 45.7
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.0e-31 141.0 215 44.7
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 1.3e-31 140.6 215 44.2
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 2.3e-31 139.8 208 43.8
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 2.5e-30 136.3 189 46.6
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 4.3e-30 135.6 212 43.9
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 4.3e-30 135.6 212 43.9
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 4.3e-30 135.6 212 43.9
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.6e-30 134.4 178 47.2
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.3e-29 134.0 212 43.4
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-29 133.7 178 46.6
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 2.1e-29 133.3 221 42.5
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.3e-29 131.7 209 40.2
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.4e-28 130.6 185 43.8
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-28 129.8 215 42.3
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.1e-28 129.0 183 46.4
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 9.0e-28 127.9 251 38.6
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.7e-26 123.6 115 58.3
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 2.9e-26 122.9 263 39.5
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 8.4e-26 121.3 174 44.8
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 8.4e-26 121.3 198 40.4
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 4.2e-25 119.0 182 39.6
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.6e-24 117.1 195 40.0
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.1e-24 116.7 195 41.5
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.7e-24 116.3 204 37.7
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 5.1e-23 112.1 213 39.9
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 8.7e-23 111.3 235 35.3
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.4e-20 103.2 198 36.9
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 2.6e-19 99.8 153 45.1
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 4.5e-19 99.0 131 49.6
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.5e-19 99.0 126 49.2
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.3e-18 97.4 198 36.4
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.9e-17 93.6 197 36.5
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.2e-17 92.8 162 40.1
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 7.2e-17 91.7 202 33.7
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.2e-17 91.7 168 38.7
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 9.4e-17 91.3 127 43.3
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.2e-16 90.9 84 58.3
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 2.7e-16 89.7 105 49.5
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.0e-15 86.3 178 36.5
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.1e-15 85.5 179 35.8
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 8.8e-15 84.7 165 40.6
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 8.8e-15 84.7 171 35.7
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 8.8e-15 84.7 171 35.7
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 1.1e-14 84.3 171 35.1
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.1e-14 84.3 102 50.0
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.5e-14 84.0 90 47.8
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 4.3e-14 82.4 171 35.1
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 4.3e-14 82.4 171 35.1
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 2.2e-13 80.1 91 46.2
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 8.2e-13 78.2 191 33.0
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 5.9e-11 72.0 174 32.2
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 3.8e-10 69.3 233 28.8
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.5e-10 68.2 136 36.8
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 8.5e-10 68.2 197 31.0
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.0e-07 61.2 173 31.2
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 1.8e-07 60.5 93 39.8
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.8e-07 60.5 108 38.0


User provided reference genes

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