Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040705 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 1.7e-193 679.1 322 100.0
CSS0045207 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 3.5e-183 644.8 318 96.2
CSS0020947 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 4.9e-145 518.1 244 98.8
CSS0035836 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 1.5e-32 144.4 74 94.6
CSS0025900 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 1.3e-31 141.4 74 91.9
CSS0032349 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 5.3e-30 136.0 74 89.2
CSS0002149 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 2.6e-29 133.7 74 89.2
Hma1.2p1_0359F.1_g135000 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 7.4e-24 115.5 216 31.9
Rhsim08G0168200 Rhododendron simsii HOM05D024541 ORTHO05D024705 3.4e-21 106.7 100 49.0
Dinv01242 Davidia involucrata HOM05D010363 ORTHO05D008693 8.4e-20 102.1 215 26.5
Rhsim11G0015600 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.1e-19 101.7 132 37.1
SGA_v2.0_scaffold142G35697 Striga asiatica HOM05D017631 ORTHO05D009908 9.3e-19 98.6 250 27.6
SGA_v2.0_scaffold81G26003 Striga asiatica HOM05D017631 ORTHO05D009908 3.5e-18 96.7 231 27.7
SGA_v2.0_scaffold540G52806 Striga asiatica HOM05D017631 ORTHO05D009908 1.3e-17 94.7 231 27.3
Rhsim01G0207900 Rhododendron simsii HOM05D012118 ORTHO05D009908 3.9e-17 93.2 187 27.3
Rhsim02G0102000 Rhododendron simsii HOM05D002347 ORTHO05D000898 3.9e-17 93.2 123 39.8
Rhsim02G0127200 Rhododendron simsii HOM05D011344 ORTHO05D016379 3.9e-17 93.2 105 39.0
SGA_v2.0_scaffold74G24629 Striga asiatica HOM05D017631 ORTHO05D009908 3.9e-17 93.2 222 27.9
CSS0025382 Camellia sinensis var. sinensis HOM05D012118 ORTHO05D009908 2.5e-16 90.5 168 29.2
RhsimUnG0133500 Rhododendron simsii HOM05D024541 ORTHO05D024705 7.4e-16 89.0 94 43.6
Rhsim04G0161400 Rhododendron simsii HOM05D012118 ORTHO05D009908 1.6e-15 87.8 198 27.3
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 2.1e-15 87.4 148 33.8
RhsimUnG0074900 Rhododendron simsii HOM05D011344 ORTHO05D016379 6.9e-14 82.4 119 32.8
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 1.3e-12 78.2 191 26.2
Lj2g0027504 Lotus japonicus HOM05D009725 ORTHO05D007788 1.7e-12 77.8 222 24.3
arahy.Tifrunner.gnm1.ann1.AXL83M Arachis hypogaea HOM05D008645 ORTHO05D007788 2.2e-12 77.4 218 27.5
Lj5g0015857 Lotus japonicus HOM05D009725 ORTHO05D007788 8.4e-12 75.5 145 29.7
FAN09G4807 Fragaria x ananassa HOM05D004096 ORTHO05D029602 4.2e-11 73.2 217 24.9
Potri.017G018801 Populus trichocarpa HOM05D000455 ORTHO05D050471 4.6e-10 69.7 195 25.6
Rhsim02G0142200 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.8e-09 67.8 66 47.0
Thhalv10020659m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 3.9e-09 66.6 182 27.5
Phvul.003G106100 Phaseolus vulgaris HOM05D002639 ORTHO05D003094 5.1e-09 66.2 187 24.1
Thecc.04G055800 Theobroma cacao HOM05D008451 ORTHO05D009908 8.7e-09 65.5 116 29.3
AL3G18030 Arabidopsis lyrata HOM05D002639 ORTHO05D003094 1.9e-08 64.3 182 26.4
BcaC05g29771 Brassica carinata HOM05D002639 ORTHO05D003094 1.9e-08 64.3 204 26.5
arahy.Tifrunner.gnm1.ann1.7RK78I Arachis hypogaea HOM05D002639 ORTHO05D003094 2.5e-08 63.9 173 26.6
BolC1t05578H Brassica oleracea HOM05D002639 ORTHO05D003094 2.5e-08 63.9 182 26.4
BcaC09g47927 Brassica carinata HOM05D002639 ORTHO05D003094 3.3e-08 63.5 182 26.4
AT3G06910 Arabidopsis thaliana HOM05D002639 ORTHO05D003094 4.3e-08 63.2 182 25.8
BNapus_Darmor_BZH_scaffold_117p00160 Brassica napus HOM05D002639 ORTHO05D003094 4.3e-08 63.2 182 26.4
Carub.0003s0643 Capsella rubella HOM05D002639 ORTHO05D003094 4.3e-08 63.2 177 26.0
MBI18_g06865_MAGBIO Magnolia biondii HOM05D002639 ORTHO05D003094 5.7e-08 62.8 187 24.1
BraA01t04407Z Brassica rapa HOM05D002639 ORTHO05D003094 7.4e-08 62.4 187 25.7
Gohir.D10G170600 Gossypium hirsutum HOM05D002639 ORTHO05D003094 7.4e-08 62.4 176 23.9
Gorai.011G190600 Gossypium raimondii HOM05D002639 ORTHO05D003094 9.6e-08 62.0 179 25.1
AUR62040372 Chenopodium quinoa HOM05D002639 ORTHO05D003094 1.3e-07 61.6 180 24.4
Sp3g05860 Schrenkiella parvula HOM05D002639 ORTHO05D003094 1.3e-07 61.6 199 25.6
GSVIVG01022680001 Vitis vinifera HOM05D010670 ORTHO05D013864 1.3e-07 61.6 235 25.5
VMungo1215G3056 Vigna mungo HOM05D002639 ORTHO05D003094 1.6e-07 61.2 187 23.0
BcaB04g21301 Brassica carinata HOM05D002639 ORTHO05D003094 2.1e-07 60.8 184 27.2
Gohir.A10G164400 Gossypium hirsutum HOM05D002639 ORTHO05D003094 2.1e-07 60.8 176 23.9
CANSAT35G0260 Cannabis sativa HOM05D019351 ORTHO05D018844 3.7e-07 60.1 206 25.2
Sabra17G0002200 Salix brachista HOM05D000063 ORTHO05D050471 3.7e-07 60.1 192 23.4
TWI53G0486 Tripterygium wilfordii HOM05D002639 ORTHO05D003094 3.7e-07 60.1 187 24.1
Actinidia14298 Actinidia chinensis HOM05D002639 ORTHO05D003094 6.3e-07 59.3 175 25.7
EL10Ac3g06606 Beta vulgaris HOM05D002639 ORTHO05D003094 6.3e-07 59.3 175 24.6
Gorai.002G028400 Gossypium raimondii HOM05D002639 ORTHO05D003094 8.2e-07 58.9 176 24.4
Medtr2g436660 Medicago truncatula HOM05D002639 ORTHO05D003094 8.2e-07 58.9 176 26.1
Migut.N00090 Erythranthe guttata HOM05D002639 ORTHO05D003094 1.4e-06 58.2 185 23.8
Psat1g154240 Pisum sativum HOM05D002639 ORTHO05D003094 1.4e-06 58.2 176 25.6
Rhsim06G0089800 Rhododendron simsii HOM05D011344 ORTHO05D000415 1.4e-06 58.2 86 32.6
Sed0000099 Sechium edule HOM05D002639 ORTHO05D003094 1.4e-06 58.2 179 24.6
Solyc01g066830.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 1.4e-06 58.2 175 23.4
Sopen01g028430 Solanum pennellii HOM05D002639 ORTHO05D003094 1.4e-06 58.2 175 23.4
Rhsim03G0056000 Rhododendron simsii HOM05D012118 ORTHO05D009908 1.8e-06 57.8 117 29.9
Medtr4g119970 Medicago truncatula HOM05D002639 ORTHO05D003094 2.4e-06 57.4 174 23.6
RhsimUnG0161200 Rhododendron simsii HOM05D012118 ORTHO05D009908 3.1e-06 57.0 119 30.3
RhsimUnG0178300 Rhododendron simsii HOM05D012118 ORTHO05D009908 3.1e-06 57.0 119 30.3
Oeu009393.1 Olea europaea HOM05D009665 ORTHO05D011335 4.1e-06 56.6 146 28.8
Oeu061925.1 Olea europaea HOM05D008641 ORTHO05D000397 4.1e-06 56.6 102 25.5
Oeu053111.1 Olea europaea HOM05D008641 ORTHO05D000397 5.3e-06 56.2 147 23.8
Rhsim05G0131400 Rhododendron simsii HOM05D011426 ORTHO05D011041 5.3e-06 56.2 135 26.7
Oeu035678.1 Olea europaea HOM05D002639 ORTHO05D003094 9.0e-06 55.5 182 25.3


User provided reference genes

Program Settings