Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.8e-133 479.6 303 100.0
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.5e-131 470.7 303 99.0
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.1e-109 400.6 314 70.7
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 4.0e-96 355.5 304 64.8
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 2.2e-94 349.7 302 63.6
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.5e-87 327.0 277 65.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.2e-86 323.2 300 60.7
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 3.7e-86 322.4 300 59.7
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 6.4e-86 321.6 303 60.7
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 8.3e-86 321.2 301 58.5
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.8e-85 320.1 302 59.9
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.8e-85 320.1 301 60.5
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.2e-85 319.3 282 63.8
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 5.4e-85 318.5 301 59.8
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.5e-84 315.8 300 58.7
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 3.9e-83 312.4 304 58.2
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 8.6e-83 311.2 283 60.8
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 5.6e-82 308.5 319 56.7
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 5.6e-82 308.5 290 59.3
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.6e-81 307.0 285 59.6
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 2.8e-81 306.2 290 58.3
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 3.6e-81 305.8 274 62.0
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 8.0e-81 304.7 289 59.2
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.4e-80 303.9 316 54.7
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.8e-80 303.5 310 56.5
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.8e-80 303.5 283 59.4
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.8e-80 303.5 277 61.0
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.3e-80 303.1 275 61.1
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 2.3e-80 303.1 309 55.7
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 3.1e-80 302.8 283 59.4
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 3.1e-80 302.8 309 56.0
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 3.1e-80 302.8 309 56.0
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.2e-79 300.8 281 59.4
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.2e-79 300.8 292 57.9
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 1.2e-79 300.8 281 59.1
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.2e-79 300.8 301 56.5
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 3.4e-79 299.3 309 55.7
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 3.4e-79 299.3 300 57.3
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 4.4e-79 298.9 309 55.0
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.4e-79 298.9 305 57.0
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 7.5e-79 298.1 281 58.0
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.3e-78 297.4 300 57.0
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.2e-78 296.6 281 58.7
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 4.9e-78 295.4 300 55.7
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 4.9e-78 295.4 281 58.7
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.3e-78 294.7 281 58.7
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.9e-77 293.5 281 56.9
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 2.4e-77 293.1 300 56.0
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 5.4e-77 292.0 288 56.2
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 5.4e-77 292.0 300 61.7
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 5.4e-77 292.0 283 67.1
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 7.0e-77 291.6 276 58.3
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 1.2e-76 290.8 266 60.9
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.6e-76 290.4 295 64.1
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 4.6e-76 288.9 281 56.6
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 4.6e-76 288.9 300 53.7
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 4.6e-76 288.9 303 64.0
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.0e-75 287.7 327 52.6
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.7e-75 287.0 285 56.1
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 3.9e-75 285.8 299 53.8
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 8.6e-75 284.6 280 56.1
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.5e-74 283.9 295 54.9
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.5e-74 283.9 301 53.2
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.9e-74 283.5 316 52.8
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 3.3e-74 282.7 289 57.4
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.3e-74 282.3 302 70.5
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 9.5e-74 281.2 295 55.3
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 2.8e-73 279.6 301 53.8
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 2.8e-73 279.6 280 55.7
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.6e-73 279.3 303 53.1
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.6e-73 279.3 303 53.1
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 4.7e-73 278.9 300 52.0
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.1e-72 277.7 280 55.4
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.1e-72 277.7 280 55.4
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.4e-72 277.3 279 55.6
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.4e-72 277.3 279 55.6
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 2.3e-72 276.6 292 56.2
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 6.8e-72 275.0 301 59.8
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 6.8e-72 275.0 329 51.4
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 6.8e-72 275.0 286 53.1
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.5e-71 273.9 295 54.2
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 2.6e-71 273.1 301 56.8
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 3.4e-71 272.7 308 51.6
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 5.8e-71 271.9 297 51.2
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.9e-70 269.6 274 56.6
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 2.9e-70 269.6 298 50.7
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 3.7e-70 269.2 303 51.2
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 6.4e-70 268.5 302 59.3
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 6.4e-70 268.5 277 54.2
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.4e-69 266.5 304 52.3
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.1e-68 263.5 299 50.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 5.1e-67 258.8 275 52.7
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.1e-66 257.7 155 81.3
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 3.3e-66 256.1 276 52.9
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 3.3e-66 256.1 288 50.3
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 7.3e-66 255.0 273 52.4
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 2.8e-65 253.1 281 50.9
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 3.6e-65 252.7 277 62.1
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.8e-64 248.4 301 49.2
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.3e-62 244.2 283 50.5
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.2e-62 243.4 141 83.7
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.1e-61 241.1 301 47.8
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.9e-61 240.4 302 61.9
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.4e-61 240.0 139 82.7
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.9e-58 230.3 238 55.5
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.5e-50 204.1 268 47.4
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 2.0e-47 193.7 320 41.2
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 6.4e-46 188.7 250 55.2
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 4.2e-45 186.0 279 41.2
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.1e-40 171.4 384 37.2
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.0e-35 154.8 197 48.2
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-33 147.1 86 81.4
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.8e-30 136.3 187 45.5
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.9e-29 134.0 76 84.2
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 6.0e-28 129.0 151 49.0
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.8e-27 127.5 194 43.3
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-26 123.6 131 52.7
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 9.0e-24 115.2 124 50.0
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.6e-23 113.6 72 75.0
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.6e-20 102.8 268 32.1
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-17 94.4 182 36.8
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 6.9e-16 89.0 94 54.3
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-15 88.2 73 61.6
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 5.0e-14 82.8 74 54.1
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.5e-14 82.4 39 92.3
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-12 77.8 73 58.9
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.1e-12 75.9 73 57.5
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.5e-10 71.2 59 57.6
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-10 69.7 37 86.5
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-10 69.7 37 86.5
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 2.4e-08 63.9 55 63.6
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 5.3e-08 62.8 55 58.2
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 2.0e-07 60.8 98 37.8
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.7e-06 57.8 40 62.5


User provided reference genes

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