Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.3e-228 794.3 393 100.0
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.3e-213 745.3 422 90.5
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 8.0e-182 640.6 395 81.0
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.9e-179 632.1 397 82.4
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 1.1e-178 630.2 398 80.2
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 1.2e-177 626.7 398 80.2
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.2e-177 626.7 387 82.9
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 5.6e-175 617.8 397 78.8
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 1.6e-166 589.7 397 75.6
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 5.2e-165 584.7 391 76.7
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 2.0e-164 582.8 392 75.5
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 2.0e-164 582.8 396 75.8
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 4.4e-164 581.6 396 74.2
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 3.7e-163 578.6 396 74.7
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.3e-163 577.4 391 74.9
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 8.3e-163 577.4 391 74.9
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 4.1e-162 575.1 398 73.4
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 7.1e-162 574.3 396 74.2
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.1e-161 572.8 413 72.6
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 6.0e-161 571.2 412 73.5
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.8e-161 570.9 391 74.2
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 7.8e-161 570.9 396 73.0
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 3.9e-160 568.5 398 72.9
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 1.1e-159 567.0 398 73.4
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 7.3e-159 564.3 396 73.2
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 7.3e-159 564.3 398 71.9
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 3.6e-158 562.0 396 72.0
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 4.7e-158 561.6 396 73.0
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 8.1e-158 560.8 396 73.0
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.1e-157 560.5 397 71.3
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 1.1e-157 560.5 388 74.2
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.4e-157 560.1 399 71.4
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 2.3e-157 559.3 398 72.4
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 3.1e-157 558.9 396 73.2
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 5.2e-157 558.1 398 71.4
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 7.6e-156 554.3 399 72.4
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 9.9e-156 553.9 397 73.3
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.7e-155 553.1 396 71.0
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 2.2e-155 552.7 397 73.0
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 8.4e-155 550.8 389 72.2
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 8.4e-155 550.8 397 73.0
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 2.4e-154 549.3 398 70.1
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.2e-154 548.9 399 71.7
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.6e-153 545.0 413 70.0
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 4.6e-153 545.0 396 70.7
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 6.0e-153 544.7 385 73.0
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 6.0e-153 544.7 443 64.8
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 7.8e-153 544.3 393 72.0
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 7.8e-153 544.3 397 71.3
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.9e-152 542.0 396 71.7
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 1.1e-151 540.4 395 69.4
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.5e-151 540.0 412 69.7
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 3.3e-151 538.9 387 70.5
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 3.3e-151 538.9 402 68.9
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 4.3e-151 538.5 399 70.9
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.6e-151 538.1 396 71.2
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 1.6e-150 536.6 392 71.2
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 3.6e-150 535.4 397 70.3
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 2.4e-149 532.7 424 66.5
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 1.3e-147 526.9 397 68.3
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 2.2e-147 526.2 399 68.9
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 2.9e-147 525.8 395 68.6
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 6.4e-147 524.6 403 67.2
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 6.4e-147 524.6 396 69.7
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 1.1e-146 523.9 423 65.5
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 1.1e-143 513.8 391 69.1
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 3.3e-143 512.3 395 66.3
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 5.6e-143 511.5 397 66.0
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 4.8e-142 508.4 400 66.2
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 8.1e-142 507.7 400 66.8
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.0e-141 505.4 393 67.7
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 6.9e-141 504.6 395 64.8
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 9.0e-141 504.2 395 65.1
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 9.0e-141 504.2 397 68.3
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.5e-140 503.4 398 64.6
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.0e-140 503.1 356 73.3
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 5.8e-140 501.5 391 67.0
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 1.3e-139 500.4 395 64.6
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 2.2e-139 499.6 395 64.8
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 1.2e-137 493.8 392 64.5
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 1.2e-137 493.8 391 66.2
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 1.6e-137 493.4 398 65.6
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 1.8e-136 490.0 388 64.4
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 3.0e-136 489.2 399 63.7
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 5.1e-136 488.4 399 63.4
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 7.4e-135 484.6 406 64.3
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.4e-133 480.3 376 68.4
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 6.9e-133 478.0 392 62.2
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 6.9e-133 478.0 401 63.8
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.6e-132 476.1 432 61.3
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 6.0e-129 464.9 386 63.0
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 3.3e-127 459.1 392 61.7
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 4.8e-126 455.3 394 61.4
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 4.8e-126 455.3 416 61.8
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.1e-125 452.6 387 61.0
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 6.9e-125 451.4 411 59.1
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.0e-124 449.9 387 60.7
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.3e-123 447.2 397 60.5
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.9e-122 443.4 308 74.7
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 9.3e-122 441.0 386 59.3
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 3.0e-120 436.0 387 62.0
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 1.3e-118 430.6 391 57.5
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.6e-118 430.3 397 61.0
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 6.3e-118 428.3 437 57.9
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 9.0e-117 424.5 400 59.2
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 3.7e-110 402.5 270 73.3
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 6.3e-110 401.7 395 54.7
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.8e-104 383.6 424 52.6
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.5e-100 370.5 295 66.1
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 1.4e-98 364.0 308 61.7
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.0e-91 341.3 305 59.3
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 1.6e-89 334.0 403 48.4
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 2.3e-88 330.1 392 48.2
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 2.4e-85 320.1 237 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 3.1e-85 319.7 389 45.8
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 8.0e-81 305.1 380 47.1
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 4.1e-77 292.7 427 41.7
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 5.6e-66 255.8 257 52.9
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 2.3e-59 233.8 155 79.4
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 1.9e-58 230.7 348 46.0
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 8.9e-56 221.9 362 44.2
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 3.4e-55 219.9 156 68.6
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.1e-37 161.8 110 73.6
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.2e-37 160.2 110 72.7
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.4e-37 159.5 110 73.6
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.9e-35 153.3 110 70.9
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 3.5e-28 130.2 125 51.2
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 3.5e-28 130.2 99 62.6
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.0e-27 128.6 96 71.9
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 1.5e-26 124.8 116 63.8
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 2.8e-25 120.6 117 59.8
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 2.4e-24 117.5 79 68.4
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 8.4e-22 109.0 87 70.1
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 5.1e-19 99.8 66 72.7
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.4e-16 90.9 56 76.8
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 4.0e-16 90.1 94 46.8
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 7.1e-13 79.3 71 56.3
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.3e-13 79.0 50 74.0
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 9.3e-13 79.0 81 54.3
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 1.0e-11 75.5 409 26.7
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.6e-09 68.2 55 58.2
SEGI_09875 Sequoiadendron giganteum HOM05D001915 ORTHO05D385338 8.4e-06 55.8 44 59.1


User provided reference genes

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