Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 3.3e-59 231.5 114 100.0
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.3e-49 198.7 114 87.7
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.3e-49 198.7 114 87.7
CSS0029053 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D113416 1.6e-21 106.3 116 52.6
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.3e-12 76.6 40 85.0
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.3e-12 76.6 40 85.0
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 3.0e-12 75.5 77 53.2
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 2.5e-11 72.4 40 80.0
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 2.5e-11 72.4 40 80.0
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 2.5e-11 72.4 40 80.0
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 3.3e-11 72.0 40 80.0
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 3.3e-11 72.0 40 75.0
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 4.3e-11 71.6 40 80.0
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 4.3e-11 71.6 40 80.0
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 4.3e-11 71.6 40 80.0
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 4.3e-11 71.6 72 54.2
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 5.6e-11 71.2 46 69.6
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 5.6e-11 71.2 46 69.6
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 5.6e-11 71.2 40 75.0
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 5.6e-11 71.2 40 77.5
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 7.4e-11 70.9 40 77.5
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 7.4e-11 70.9 46 69.6
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 9.6e-11 70.5 40 75.0
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 9.6e-11 70.5 40 75.0
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 9.6e-11 70.5 40 77.5
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 1.3e-10 70.1 46 69.6
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 1.6e-10 69.7 40 77.5
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 1.6e-10 69.7 38 81.6
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 2.1e-10 69.3 40 77.5
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 2.1e-10 69.3 40 75.0
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 2.1e-10 69.3 40 77.5
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 2.8e-10 68.9 46 67.4
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 3.6e-10 68.6 94 43.6
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 3.6e-10 68.6 77 50.6
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 3.6e-10 68.6 40 75.0
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 3.6e-10 68.6 42 71.4
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 3.6e-10 68.6 77 50.6
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 4.8e-10 68.2 40 77.5
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 4.8e-10 68.2 77 49.4
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 4.8e-10 68.2 40 77.5
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 4.8e-10 68.2 40 77.5
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 4.8e-10 68.2 40 77.5
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 4.8e-10 68.2 40 75.0
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 6.2e-10 67.8 40 75.0
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 6.2e-10 67.8 40 77.5
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 6.2e-10 67.8 40 75.0
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 6.2e-10 67.8 40 77.5
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 8.1e-10 67.4 40 72.5
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 8.1e-10 67.4 78 50.0
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 1.1e-09 67.0 40 75.0
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 1.8e-09 66.2 40 70.0
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 1.8e-09 66.2 40 72.5
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 1.8e-09 66.2 40 75.0
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 1.8e-09 66.2 40 72.5
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 1.8e-09 66.2 43 67.4
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 1.8e-09 66.2 40 72.5
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 2.4e-09 65.9 40 70.0
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 2.4e-09 65.9 40 70.0
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 2.4e-09 65.9 40 70.0
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 2.4e-09 65.9 40 72.5
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 3.1e-09 65.5 40 70.0
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 3.1e-09 65.5 40 75.0
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 4.0e-09 65.1 40 70.0
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 4.0e-09 65.1 40 70.0
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 4.0e-09 65.1 40 70.0
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 5.3e-09 64.7 40 70.0
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 5.3e-09 64.7 40 70.0
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 5.3e-09 64.7 40 67.5
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 5.3e-09 64.7 40 67.5
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 5.3e-09 64.7 40 70.0
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 5.3e-09 64.7 46 63.0
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 5.3e-09 64.7 78 47.4
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 5.3e-09 64.7 78 47.4
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 5.3e-09 64.7 37 81.1
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 6.9e-09 64.3 78 47.4
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 6.9e-09 64.3 46 63.0
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 6.9e-09 64.3 105 39.0
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 9.0e-09 63.9 40 67.5
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 9.0e-09 63.9 40 65.0
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 1.5e-08 63.2 40 67.5
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 2.0e-08 62.8 40 72.5
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 3.4e-08 62.0 40 65.0
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 4.5e-08 61.6 40 65.0
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 4.5e-08 61.6 40 62.5
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 9.9e-08 60.5 39 66.7
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 9.9e-08 60.5 40 65.0
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 1.7e-07 59.7 92 39.1
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 2.2e-07 59.3 39 66.7
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 3.8e-07 58.5 40 62.5
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 1.1e-06 57.0 79 40.5
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 2.4e-06 55.8 40 62.5
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 4.2e-06 55.1 42 57.1


User provided reference genes

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