Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.6e-88 329.3 162 100.0
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.2e-76 288.5 190 79.5
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 1.3e-48 196.8 193 59.1
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.4e-34 150.2 79 89.9
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.6e-27 126.7 80 73.8
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 5.2e-26 121.7 80 72.5
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 2.8e-24 115.9 110 59.1
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 3.7e-24 115.5 80 70.0
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 4.8e-24 115.2 132 50.0
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.4e-23 113.6 83 65.1
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 3.1e-23 112.5 83 63.9
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 7.0e-23 111.3 80 67.5
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 2.0e-22 109.8 83 62.7
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 1.0e-21 107.5 83 62.7
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 2.9e-21 105.9 80 65.0
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 6.5e-21 104.8 80 58.8
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 1.5e-20 103.6 81 64.2
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 1.5e-20 103.6 81 63.0
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 2.5e-20 102.8 87 58.6
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 3.2e-20 102.4 77 62.3
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 4.2e-20 102.1 83 59.0
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 9.4e-20 100.9 90 58.9
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.6e-19 100.1 80 62.5
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.1e-19 99.8 85 58.8
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 2.7e-19 99.4 128 45.3
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 3.6e-19 99.0 82 58.5
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.7e-19 98.6 79 57.0
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 4.7e-19 98.6 80 62.5
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 4.7e-19 98.6 80 62.5
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 6.1e-19 98.2 83 59.0
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 6.1e-19 98.2 77 59.7
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 8.0e-19 97.8 83 56.6
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 1.4e-18 97.1 79 57.0
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 1.4e-18 97.1 77 61.0
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 1.8e-18 96.7 97 53.6
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.8e-18 96.7 78 59.0
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.8e-18 96.7 80 55.0
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.8e-18 96.7 79 55.7
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 1.8e-18 96.7 79 57.0
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 2.3e-18 96.3 78 61.5
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 3.0e-18 95.9 83 54.2
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 3.0e-18 95.9 80 60.0
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 3.0e-18 95.9 113 50.4
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 4.0e-18 95.5 83 57.8
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 5.2e-18 95.1 78 61.5
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 5.2e-18 95.1 80 61.2
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 5.2e-18 95.1 75 61.3
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 6.8e-18 94.7 78 60.3
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 8.8e-18 94.4 83 55.4
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 8.8e-18 94.4 81 60.5
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.2e-17 94.0 80 58.8
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 1.2e-17 94.0 116 48.3
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 2.0e-17 93.2 110 48.2
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 2.0e-17 93.2 80 60.0
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 2.6e-17 92.8 80 57.5
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 2.6e-17 92.8 78 60.3
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 2.6e-17 92.8 78 59.0
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 3.4e-17 92.4 116 45.7
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 4.4e-17 92.0 82 56.1
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 4.4e-17 92.0 81 56.8
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 5.7e-17 91.7 108 47.2
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.3e-16 90.5 81 54.3
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.3e-16 90.5 83 56.6
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 1.3e-16 90.5 79 58.2
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 1.3e-16 90.5 128 43.8
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 1.7e-16 90.1 86 57.0
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 2.2e-16 89.7 80 57.5
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 2.8e-16 89.4 95 54.7
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.7e-16 89.0 66 66.7
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 6.3e-16 88.2 129 43.4
CSS0042036 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 8.3e-16 87.8 56 78.6
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 1.1e-15 87.4 110 45.5
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 1.4e-15 87.0 81 58.0
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 1.4e-15 87.0 129 44.2
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.8e-15 86.7 77 58.4
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 2.4e-15 86.3 78 53.8
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 3.1e-15 85.9 80 53.8
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 5.4e-15 85.1 83 54.2
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 7.0e-15 84.7 80 51.2
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 7.0e-15 84.7 80 57.5
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 1.2e-14 84.0 82 54.9
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 3.5e-14 82.4 83 51.8
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 3.5e-14 82.4 85 55.3
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 3.5e-14 82.4 81 50.6
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 4.5e-14 82.0 81 50.6
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 7.7e-14 81.3 81 55.6
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.7e-13 80.1 120 44.2
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.2e-13 79.7 81 48.1
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 3.8e-13 79.0 74 52.7
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 6.5e-13 78.2 81 51.9
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 6.5e-13 78.2 81 51.9
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 6.5e-13 78.2 81 51.9
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 6.5e-13 78.2 77 53.2
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.1e-12 77.4 120 41.7
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.9e-12 76.6 81 49.4
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.9e-12 76.6 81 49.4
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.9e-12 76.6 73 54.8
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 2.5e-12 76.3 81 53.1
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 5.5e-12 75.1 81 51.9
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 7.2e-12 74.7 81 49.4
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 9.5e-12 74.3 129 38.0
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 2.7e-11 72.8 82 52.4
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 5.2e-10 68.6 83 44.6
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 6.8e-10 68.2 59 52.5
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.5e-09 67.0 65 50.8
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 2.0e-09 66.6 48 62.5
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 4.9e-08 62.0 77 40.3
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 9.2e-07 57.8 116 37.9


User provided reference genes

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