Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040675 Camellia sinensis var. sinensis HOM05D007442 ORTHO05D009284 1.4e-30 135.6 65 100.0
CSS0032520 Camellia sinensis var. sinensis HOM05D007442 ORTHO05D009284 1.8e-30 135.2 64 100.0
Actinidia35204 Actinidia chinensis HOM05D007442 ORTHO05D009284 1.1e-19 99.4 72 70.8
Dinv26606 Davidia involucrata HOM05D007442 ORTHO05D009284 2.1e-15 85.1 72 62.5
vmacro09481 Vaccinium macrocarpon HOM05D007442 ORTHO05D009284 8.2e-15 83.2 72 65.3
Cfa014227 Carpinus fangiana HOM05D007442 ORTHO05D009284 1.1e-14 82.8 72 61.1
Dinv21296 Davidia involucrata HOM05D007442 ORTHO05D009284 1.2e-13 79.3 73 58.9
Haze_12630 Corylus avellana HOM05D007442 ORTHO05D009284 4.5e-13 77.4 72 56.9
GSVIVG01030083001 Vitis vinifera HOM05D007442 ORTHO05D009284 1.7e-12 75.5 72 55.6
Rhsim04G0028000 Rhododendron simsii HOM05D000264 ORTHO05D009284 4.2e-11 70.9 74 60.8
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 1.8e-09 65.5 74 55.4
Potri.014G167300 Populus trichocarpa HOM05D007442 ORTHO05D009284 1.8e-09 65.5 72 51.4
CiPaw.03G281600 Carya illinoinensis HOM05D007442 ORTHO05D009284 3.0e-09 64.7 68 55.9
Prupe.3G197600 Prunus persica HOM05D007442 ORTHO05D009284 3.0e-09 64.7 71 50.7
Thecc.01G195900 Theobroma cacao HOM05D007442 ORTHO05D009284 5.1e-09 63.9 73 53.4
Gohir.D07G198200 Gossypium hirsutum HOM05D007442 ORTHO05D009284 6.7e-09 63.5 73 54.8
Gorai.001G221800 Gossypium raimondii HOM05D007442 ORTHO05D009284 6.7e-09 63.5 73 54.8
SGA_v2.0_scaffold49G18406 Striga asiatica HOM05D007442 ORTHO05D009284 8.7e-09 63.2 74 44.6
Gohir.A07G191900 Gossypium hirsutum HOM05D007442 ORTHO05D009284 1.5e-08 62.4 73 54.8
MD17G1116900 Malus domestica HOM05D007442 ORTHO05D009284 1.5e-08 62.4 71 49.3
QL04p068504 Quercus lobata HOM05D007442 ORTHO05D009284 1.5e-08 62.4 72 47.2
COL.COLO4_33329 Corchorus olitorius HOM05D007442 ORTHO05D009284 4.3e-08 60.8 76 51.3
Glyma.02G308900 Glycine max HOM05D007442 ORTHO05D009284 4.3e-08 60.8 69 52.2
Lj8A135T99 Lonicera japonica HOM05D007442 ORTHO05D009284 5.7e-08 60.5 80 50.0
Sabra14G0127300 Salix brachista HOM05D007442 ORTHO05D009284 7.4e-08 60.1 73 49.3
MELO3C025961.2 Cucumis melo HOM05D007442 ORTHO05D009284 1.6e-07 58.9 77 46.8
Peaxi162Scf00147g01918 Petunia axillaris HOM05D007442 ORTHO05D009284 1.6e-07 58.9 72 48.6
EL10Ac9g22680 Beta vulgaris HOM05D007442 ORTHO05D009284 2.2e-07 58.5 71 49.3
DCAR_021093 Daucus carota HOM05D007442 ORTHO05D009284 2.2e-07 58.5 71 52.1
ClCG02G009230 Citrullus lanatus HOM05D007442 ORTHO05D009284 2.8e-07 58.2 74 47.3
CsaV3_6G009590 Cucumis sativus L. HOM05D007442 ORTHO05D009284 2.8e-07 58.2 76 46.1
Nitab4.5_0000006g0670 Nicotiana tabacum HOM05D007442 ORTHO05D009284 3.7e-07 57.8 72 50.0
CANSAT80G0988 Cannabis sativa HOM05D007442 ORTHO05D009284 4.8e-07 57.4 60 50.0
Manes.12G065601 Manihot esculenta HOM05D007442 ORTHO05D009284 4.8e-07 57.4 64 46.9
Nitab4.5_0002154g0020 Nicotiana tabacum HOM05D007442 ORTHO05D009284 4.8e-07 57.4 72 48.6
Ciclev10017197m.g Citrus clementina HOM05D007442 ORTHO05D009284 8.2e-07 56.6 75 41.3
FAN05G2406 Fragaria x ananassa HOM05D007442 ORTHO05D009284 1.1e-06 56.2 71 46.5
Sed0010901 Sechium edule HOM05D007442 ORTHO05D009284 1.1e-06 56.2 68 47.1
LjContig00081g0000923 Lotus japonicus HOM05D007442 ORTHO05D009284 1.4e-06 55.8 66 43.9
arahy.Tifrunner.gnm1.ann1.8YE7LP Arachis hypogaea HOM05D007442 ORTHO05D009284 2.4e-06 55.1 74 45.9
BcaB06g26827 Brassica carinata HOM05D007442 ORTHO05D009284 2.4e-06 55.1 77 46.8
TWI36G1704 Tripterygium wilfordii HOM05D007442 ORTHO05D009284 2.4e-06 55.1 70 48.6
FAN09G1668 Fragaria x ananassa HOM05D007442 ORTHO05D009284 3.1e-06 54.7 71 45.1
Phvul.008G289000 Phaseolus vulgaris HOM05D007442 ORTHO05D009284 3.1e-06 54.7 69 47.8
AT2G05310 Arabidopsis thaliana HOM05D007442 ORTHO05D009284 4.1e-06 54.3 43 60.5
Cc00_g11580 Coffea canephora HOM05D007442 ORTHO05D009284 4.1e-06 54.3 71 46.5
FvH4_6g40630 Fragaria vesca HOM05D007442 ORTHO05D009284 4.1e-06 54.3 71 45.1
FAN02G0623 Fragaria x ananassa HOM05D007442 ORTHO05D009284 4.1e-06 54.3 71 45.1
FAN14G4407 Fragaria x ananassa HOM05D007442 ORTHO05D009284 4.1e-06 54.3 71 45.1
AL3G42820 Arabidopsis lyrata HOM05D007442 ORTHO05D009284 5.3e-06 53.9 60 48.3
Duzib138G0628 Durio zibethinus HOM05D007442 ORTHO05D009284 5.3e-06 53.9 73 47.9
Oeu064352.1 Olea europaea HOM05D007442 ORTHO05D009284 5.3e-06 53.9 72 50.0
Lsat_1_v5_gn_7_96821 Lactuca sativa HOM05D007442 ORTHO05D009284 6.9e-06 53.5 76 46.1
VMungo0647G0872 Vigna mungo HOM05D007442 ORTHO05D009284 6.9e-06 53.5 69 50.7
AT4G13500 Arabidopsis thaliana HOM05D007442 ORTHO05D009284 9.0e-06 53.1 60 48.3


User provided reference genes

Program Settings