Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.0e-55 218.8 106 100.0
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.0e-55 218.8 106 100.0
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.9e-33 144.4 111 66.7
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 4.6e-31 137.9 110 65.5
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 7.8e-31 137.1 109 66.1
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.0e-30 136.7 113 66.4
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.6e-29 131.0 111 64.0
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.6e-29 131.0 111 64.0
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 5.6e-29 131.0 111 64.0
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.3e-29 130.6 109 64.2
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.2e-28 129.8 102 63.7
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.2e-28 129.8 108 64.8
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 1.6e-28 129.4 113 61.1
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.6e-28 129.4 114 62.3
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 2.8e-28 128.6 107 63.6
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 2.8e-28 128.6 114 57.0
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 8.0e-28 127.1 107 62.6
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 8.0e-28 127.1 111 63.1
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-27 126.3 106 65.1
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.8e-27 125.9 106 61.3
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.8e-27 125.9 111 57.7
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.8e-27 125.9 110 58.2
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 4.0e-27 124.8 111 62.2
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 4.0e-27 124.8 111 62.2
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.0e-27 124.8 111 59.5
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.5e-26 122.9 106 61.3
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.4e-26 121.3 111 58.6
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 4.4e-26 121.3 109 60.6
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 7.5e-26 120.6 102 63.7
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.7e-25 119.4 120 56.7
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.9e-25 118.6 109 56.0
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.9e-25 118.6 109 56.0
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 2.9e-25 118.6 111 58.6
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 4.9e-25 117.9 111 56.8
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.4e-25 117.5 115 56.5
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.4e-25 117.5 115 56.5
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 8.3e-25 117.1 109 56.9
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.1e-24 116.7 108 59.3
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.1e-24 116.7 113 57.5
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.4e-24 116.3 110 57.3
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.4e-24 115.5 112 57.1
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 3.2e-24 115.2 116 56.0
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 3.2e-24 115.2 102 62.7
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 3.2e-24 115.2 122 57.4
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 4.1e-24 114.8 113 57.5
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.1e-24 114.8 111 55.9
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 5.4e-24 114.4 102 59.8
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 5.4e-24 114.4 106 56.6
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 5.4e-24 114.4 107 61.7
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 5.4e-24 114.4 106 57.5
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 9.2e-24 113.6 99 58.6
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.0e-23 110.9 96 60.4
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 7.8e-23 110.5 104 56.7
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 7.8e-23 110.5 103 60.2
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.7e-22 109.4 106 52.8
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 2.3e-22 109.0 102 57.8
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 2.3e-22 109.0 110 55.5
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 2.3e-22 109.0 110 55.5
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 3.9e-22 108.2 116 55.2
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 3.9e-22 108.2 111 56.8
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 3.9e-22 108.2 108 53.7
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 5.0e-22 107.8 108 58.3
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 5.0e-22 107.8 100 61.0
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 5.0e-22 107.8 108 53.7
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 6.6e-22 107.5 107 55.1
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.6e-22 107.1 107 57.9
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 8.6e-22 107.1 105 56.2
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-21 106.7 108 57.4
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.9e-21 105.9 116 51.7
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.9e-21 105.9 99 57.6
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.5e-21 105.5 108 56.5
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 4.3e-21 104.8 107 53.3
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 4.3e-21 104.8 91 60.4
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 5.6e-21 104.4 106 55.7
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 5.6e-21 104.4 90 60.0
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 9.5e-21 103.6 92 64.1
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 9.5e-21 103.6 114 57.0
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.6e-20 102.8 110 49.1
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.1e-20 102.4 91 57.1
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.1e-20 102.4 113 50.4
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 4.7e-20 101.3 109 49.5
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 8.1e-20 100.5 88 63.6
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 8.9e-19 97.1 113 53.1
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.5e-18 96.3 104 50.0
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 1.5e-18 96.3 97 55.7
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.6e-18 95.5 97 56.7
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.4e-18 94.7 104 50.0
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 4.4e-18 94.7 126 50.0
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 7.5e-18 94.0 109 47.7
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.3e-17 93.2 106 50.9
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.7e-17 92.8 102 47.1
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 6.4e-17 90.9 111 48.6
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.4e-16 89.0 91 50.5
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 3.2e-16 88.6 123 48.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.4e-16 87.8 106 45.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 9.2e-16 87.0 101 55.4
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.2e-15 86.7 113 46.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.6e-15 86.3 106 44.3
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.6e-15 86.3 113 46.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 1.6e-15 86.3 112 44.6
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.1e-15 85.9 102 47.1
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 2.7e-15 85.5 112 44.6
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.7e-15 85.5 106 45.3
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 3.5e-15 85.1 99 51.5
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 4.6e-15 84.7 102 44.1
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 4.6e-15 84.7 102 44.1
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 7.8e-15 84.0 102 43.1
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.3e-14 83.2 102 43.1
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.3e-14 83.2 105 44.8
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.7e-14 82.8 105 43.8
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.7e-14 82.8 109 45.0
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 2.3e-14 82.4 112 43.8
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 3.9e-14 81.6 102 42.2
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.1e-14 81.3 112 41.1
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 6.6e-14 80.9 103 45.6
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 6.6e-14 80.9 82 52.4
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.1e-13 80.1 102 45.1
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.5e-13 79.7 110 41.8
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.5e-13 79.7 100 54.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.5e-13 79.0 107 43.9
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 3.3e-13 78.6 88 47.7
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.3e-13 78.2 97 42.3
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 7.3e-13 77.4 109 44.0
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 7.3e-13 77.4 108 40.7
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.6e-12 76.3 102 44.1
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 4.7e-12 74.7 106 43.4
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 4.7e-12 74.7 106 43.4
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 4.7e-12 74.7 96 52.1
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 4.7e-12 74.7 71 53.5
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 8.1e-12 73.9 102 42.2
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.4e-11 73.2 93 38.7
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 1.4e-11 73.2 102 41.2
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 1.4e-11 73.2 102 41.2
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.8e-11 72.8 102 42.2
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 2.3e-11 72.4 109 45.9
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.2e-10 70.1 94 42.6
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 1.2e-10 70.1 110 40.0
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.0e-10 69.3 91 46.2
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 3.4e-10 68.6 90 38.9
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 7.6e-10 67.4 113 35.4
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.7e-09 66.2 55 54.5
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.1e-08 63.5 108 40.7
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.1e-08 63.5 113 35.4
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 3.2e-08 62.0 91 44.0
MBI19_g06152_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 1.2e-07 60.1 106 39.6
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 1.6e-07 59.7 119 37.0


User provided reference genes

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